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The map label for this gene is ydiR [H]

Identifier: 194735313

GI number: 194735313

Start: 1397522

End: 1398457

Strand: Reverse

Name: ydiR [H]

Synonym: SeSA_A1449

Alternate gene names: 194735313

Gene position: 1398457-1397522 (Counterclockwise)

Preceding gene: 194736515

Following gene: 194737729

Centisome position: 29.7

GC content: 53.74

Gene sequence:

>936_bases
ATGAATCATTTAGCTAACGTATGGGTATTTAGCGATAACGTAGAGCGTTATGCCGAATTAATGACCGGCGCGCGGCAGTG
GGGAGAAAAAGTTTACGCCATCGTGCAAGGAAACACGGAGATCGACTACGTGAAAGCGCTTGGCGCTGATGAGATAGTCA
TTCTTGAATCGCATACGGATTTGCAGCGCGTGGAAAACTATGCCGAAACGCTGGCCTCGTTATTAGGCGACAAAAATGGG
CTACTGCTCATGGCGGCGACCAAGCGCTGCAAAGCGCTGGGCGCCCGGCTGAGCATCCAGCTTGACGCCGTGATGGTGAA
CGACGCGACGTCTATTGATCTCCTCGACGGGACGCTACACGCAGAGCATCGCATGTACGGCGGACTTGCTTTCGGCAAAG
AGAAATTAAACAGTCCGCAGGCGATTATTACGCTGGCACCCGGCGTGCTGGAACCCGCCGCCCCTCTCCCCAGTCATACT
TGCCCGCTGACCACGCTGGCATATATTGCCCCACGCCACGAGGTATTGTGCCAGCAGCGGCGCGCGAAATCGTTAAGCAG
CGTCGATTTGAGCAAAGCCAAACGGGTCATCGGCGTAGGACGAGGTCTGGCGGCGCAAAGCGATCTGGATATGGTGCATA
AACTGGCGACCGTCCTCGGCGCAGAAGTGGGCTGTTCCCGCCCCATTGCGGAAGGTGAAAACTGGATGGAACGCGAGCGT
TATATTGGCGTATCCGGCGTTCTGTTGAAATCCGATCTCTATCTGACGCTGGGCATTTCCGGCCAAATTCAACATATGGT
GGGTGGAAACGGCGCAAAAATTATTGTCGCAATTAACAAAGATAAAAACGCGCCCATTTTCAATTATGCCGATTATGGTC
TGGTGGGCGATATCTATAAGGTTGTTCCTGCCCTCATCGACCAGTTAAGCCGCTAA

Upstream 100 bases:

>100_bases
CAAGCATATCATTCTCGATAACGATTCGCCGGAAGCCATTACCGCACTGGCCGACCATTTGAAAAAATCCCTGAACTAAA
CCCAACGGAGAAAAATTATC

Downstream 100 bases:

>100_bases
TTCCTTTTTCAACGCACATCTCTCGTCGTCGATACGGCGGGAAAGGAGCATAAAGCATGTCGGATGATAAATTTGACGCT
ATTGTGGTGGGTGCAGGCGT

Product: electron transfer flavoprotein subunit YdiR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 311; Mature: 311

Protein sequence:

>311_residues
MNHLANVWVFSDNVERYAELMTGARQWGEKVYAIVQGNTEIDYVKALGADEIVILESHTDLQRVENYAETLASLLGDKNG
LLLMAATKRCKALGARLSIQLDAVMVNDATSIDLLDGTLHAEHRMYGGLAFGKEKLNSPQAIITLAPGVLEPAAPLPSHT
CPLTTLAYIAPRHEVLCQQRRAKSLSSVDLSKAKRVIGVGRGLAAQSDLDMVHKLATVLGAEVGCSRPIAEGENWMERER
YIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKIIVAINKDKNAPIFNYADYGLVGDIYKVVPALIDQLSR

Sequences:

>Translated_311_residues
MNHLANVWVFSDNVERYAELMTGARQWGEKVYAIVQGNTEIDYVKALGADEIVILESHTDLQRVENYAETLASLLGDKNG
LLLMAATKRCKALGARLSIQLDAVMVNDATSIDLLDGTLHAEHRMYGGLAFGKEKLNSPQAIITLAPGVLEPAAPLPSHT
CPLTTLAYIAPRHEVLCQQRRAKSLSSVDLSKAKRVIGVGRGLAAQSDLDMVHKLATVLGAEVGCSRPIAEGENWMERER
YIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKIIVAINKDKNAPIFNYADYGLVGDIYKVVPALIDQLSR
>Mature_311_residues
MNHLANVWVFSDNVERYAELMTGARQWGEKVYAIVQGNTEIDYVKALGADEIVILESHTDLQRVENYAETLASLLGDKNG
LLLMAATKRCKALGARLSIQLDAVMVNDATSIDLLDGTLHAEHRMYGGLAFGKEKLNSPQAIITLAPGVLEPAAPLPSHT
CPLTTLAYIAPRHEVLCQQRRAKSLSSVDLSKAKRVIGVGRGLAAQSDLDMVHKLATVLGAEVGCSRPIAEGENWMERER
YIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKIIVAINKDKNAPIFNYADYGLVGDIYKVVPALIDQLSR

Specific function: May play a role in a redox process [H]

COG id: COG2025

COG function: function code C; Electron transfer flavoprotein, alpha subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ETF alpha-subunit/fixB family [H]

Homologues:

Organism=Homo sapiens, GI4503607, Length=123, Percent_Identity=41.4634146341463, Blast_Score=101, Evalue=1e-21,
Organism=Homo sapiens, GI189181759, Length=123, Percent_Identity=41.4634146341463, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1787990, Length=312, Percent_Identity=73.3974358974359, Blast_Score=472, Evalue=1e-134,
Organism=Escherichia coli, GI1786226, Length=313, Percent_Identity=42.4920127795527, Blast_Score=271, Evalue=5e-74,
Organism=Escherichia coli, GI87082157, Length=220, Percent_Identity=30.4545454545455, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17506929, Length=298, Percent_Identity=30.5369127516779, Blast_Score=115, Evalue=3e-26,
Organism=Saccharomyces cerevisiae, GI6325261, Length=125, Percent_Identity=40.8, Blast_Score=98, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17136898, Length=121, Percent_Identity=41.3223140495868, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI24652801, Length=121, Percent_Identity=41.3223140495868, Blast_Score=98, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001308
- InterPro:   IPR014730
- InterPro:   IPR014731
- InterPro:   IPR018206
- InterPro:   IPR014729 [H]

Pfam domain/function: PF01012 ETF; PF00766 ETF_alpha [H]

EC number: NA

Molecular weight: Translated: 33688; Mature: 33688

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: PS00696 ETF_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHLANVWVFSDNVERYAELMTGARQWGEKVYAIVQGNTEIDYVKALGADEIVILESHTD
CCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCCCEEHHHHCCCCCEEEEECCCH
LQRVENYAETLASLLGDKNGLLLMAATKRCKALGARLSIQLDAVMVNDATSIDLLDGTLH
HHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCEEEEEEEEEEECCCCEEEEECCCHH
AEHRMYGGLAFGKEKLNSPQAIITLAPGVLEPAAPLPSHTCPLTTLAYIAPRHEVLCQQR
HHHHHHCCHHHCHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHH
RAKSLSSVDLSKAKRVIGVGRGLAAQSDLDMVHKLATVLGAEVGCSRPIAEGENWMERER
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
YIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKIIVAINKDKNAPIFNYADYGLVGDIYK
HCCCCEEEEECCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCHHHHHHH
VVPALIDQLSR
HHHHHHHHHCC
>Mature Secondary Structure
MNHLANVWVFSDNVERYAELMTGARQWGEKVYAIVQGNTEIDYVKALGADEIVILESHTD
CCCCEEEEEEECCHHHHHHHHHHHHHHCCEEEEEEECCCCEEHHHHCCCCCEEEEECCCH
LQRVENYAETLASLLGDKNGLLLMAATKRCKALGARLSIQLDAVMVNDATSIDLLDGTLH
HHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHCCEEEEEEEEEEECCCCEEEEECCCHH
AEHRMYGGLAFGKEKLNSPQAIITLAPGVLEPAAPLPSHTCPLTTLAYIAPRHEVLCQQR
HHHHHHCCHHHCHHHCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCHHHHHHHHH
RAKSLSSVDLSKAKRVIGVGRGLAAQSDLDMVHKLATVLGAEVGCSRPIAEGENWMERER
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHH
YIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKIIVAINKDKNAPIFNYADYGLVGDIYK
HCCCCEEEEECCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCEEECCCCCHHHHHHH
VVPALIDQLSR
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]