Click here to switch to the map view.

The map label for this gene is yibQ [H]

Identifier: 194735049

GI number: 194735049

Start: 3775960

End: 3776922

Strand: Direct

Name: yibQ [H]

Synonym: SeSA_A3905

Alternate gene names: 194735049

Gene position: 3775960-3776922 (Clockwise)

Preceding gene: 194738321

Following gene: 194734790

Centisome position: 80.18

GC content: 56.18

Gene sequence:

>963_bases
TTGCCTCAGTTTCGTCGCTCCATTCTCACGCTGGCCACTTTGCTGGCGTTTGCACATCCCGTTTTCGCTGGCAAGCTCGC
CATCGTGATTGATGATTTTGGCTATCGCCCGCATACGGAAAACCAGGTTCTGGCGCTGCCGCCAAACATCTCCGTCGCCG
TGCTGCCCAACGCGCCGCACGCGCGCGAAATGGCAACTAAAGCGCACAATAGCGGGCATGAGGTGTTAATCCATCTGCCG
ATGGCGCCGCTAAGCAAACAGCCGCTGGAGAAGGATACGCTGCGACCAGATATGAGCAGCGATGAGATCGAGCGCATTAT
CCGCGAGGCGGTAAACAACGTGCCGTATGCCGTCGGGCTTAATAACCACATGGGCAGCGCAATGACTTCCAGCCTGTTCG
GTATGCAAAAAGTGATGCAGGCGCTGGAACATTACAATCTCTATTTTCTCGACAGCATGACGATTGGCAATAGCCAGGCG
ATGCGCGCGGCATCCGGTACGGGTGTGAAAGTGATCAAGCGCAAAGTGTTCCTCGACGATACGCAAAACGAGGCGGATAT
TCGCCGTCAGTTTAATCGCGCTATTGAACTGGCCCGTCGCAACGGTTCCGCTATCGCGATTGGTCATCCGCATCCCGCAA
CGGTTCGCGTGCTGCAACAGATGGTTTATCGCCTGCCGGCGGATATCACCCTGGTACGTCCAGGCAGCCTGCTCAACGAA
CCGCAGGTAGATACGTCCCGACCTGATTTGACGCCGCAGAAAATTGACGCGCCGCGCAATCCCTTTCGCGGCGTGAAGAT
GTGCAAGCCGAAAAAACCGCTGCAACCGGTCTACGCTACGCGCTTTTTCAGCGTCATCGGCGAGAGTATTACGCAAAGTT
CCGTGGTTGCCTGGTTTCAGCACCAGTGGCAAGGCTGGGGGAAAATCGCCGCGCCTAAAAACGTGAGCGCTAAGACAGAT
TGA

Upstream 100 bases:

>100_bases
TGTGGGCAGTAGCGGCGGTCAGGGCAGACCCTCGCTTTATTTCGAAATTCGTCGCCAGGGTCAGGCCGTCAATCCACAGC
CGTGGTTGGGAAAATAAGTT

Downstream 100 bases:

>100_bases
GCGCCTTACGGGCCATACGACGGTGCGACAAGGTTTTGTCGCGCCATTGCCACAGCCGGAAAGACCAGATCAGCGTCTGA
TAAGCCGCTTTCGCGCTGCG

Product: divergent polysaccharide deacetylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 319

Protein sequence:

>320_residues
MPQFRRSILTLATLLAFAHPVFAGKLAIVIDDFGYRPHTENQVLALPPNISVAVLPNAPHAREMATKAHNSGHEVLIHLP
MAPLSKQPLEKDTLRPDMSSDEIERIIREAVNNVPYAVGLNNHMGSAMTSSLFGMQKVMQALEHYNLYFLDSMTIGNSQA
MRAASGTGVKVIKRKVFLDDTQNEADIRRQFNRAIELARRNGSAIAIGHPHPATVRVLQQMVYRLPADITLVRPGSLLNE
PQVDTSRPDLTPQKIDAPRNPFRGVKMCKPKKPLQPVYATRFFSVIGESITQSSVVAWFQHQWQGWGKIAAPKNVSAKTD

Sequences:

>Translated_320_residues
MPQFRRSILTLATLLAFAHPVFAGKLAIVIDDFGYRPHTENQVLALPPNISVAVLPNAPHAREMATKAHNSGHEVLIHLP
MAPLSKQPLEKDTLRPDMSSDEIERIIREAVNNVPYAVGLNNHMGSAMTSSLFGMQKVMQALEHYNLYFLDSMTIGNSQA
MRAASGTGVKVIKRKVFLDDTQNEADIRRQFNRAIELARRNGSAIAIGHPHPATVRVLQQMVYRLPADITLVRPGSLLNE
PQVDTSRPDLTPQKIDAPRNPFRGVKMCKPKKPLQPVYATRFFSVIGESITQSSVVAWFQHQWQGWGKIAAPKNVSAKTD
>Mature_319_residues
PQFRRSILTLATLLAFAHPVFAGKLAIVIDDFGYRPHTENQVLALPPNISVAVLPNAPHAREMATKAHNSGHEVLIHLPM
APLSKQPLEKDTLRPDMSSDEIERIIREAVNNVPYAVGLNNHMGSAMTSSLFGMQKVMQALEHYNLYFLDSMTIGNSQAM
RAASGTGVKVIKRKVFLDDTQNEADIRRQFNRAIELARRNGSAIAIGHPHPATVRVLQQMVYRLPADITLVRPGSLLNEP
QVDTSRPDLTPQKIDAPRNPFRGVKMCKPKKPLQPVYATRFFSVIGESITQSSVVAWFQHQWQGWGKIAAPKNVSAKTD

Specific function: Unknown

COG id: COG2861

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_0755 [H]

Homologues:

Organism=Escherichia coli, GI87082298, Length=318, Percent_Identity=80.5031446540881, Blast_Score=515, Evalue=1e-147,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006837
- InterPro:   IPR011330
- InterPro:   IPR002509 [H]

Pfam domain/function: PF04748 Polysacc_deac_2 [H]

EC number: NA

Molecular weight: Translated: 35563; Mature: 35431

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQFRRSILTLATLLAFAHPVFAGKLAIVIDDFGYRPHTENQVLALPPNISVAVLPNAPH
CCHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCC
AREMATKAHNSGHEVLIHLPMAPLSKQPLEKDTLRPDMSSDEIERIIREAVNNVPYAVGL
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC
NNHMGSAMTSSLFGMQKVMQALEHYNLYFLDSMTIGNSQAMRAASGTGVKVIKRKVFLDD
CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHCCCCCHHHHHHHHHHCC
TQNEADIRRQFNRAIELARRNGSAIAIGHPHPATVRVLQQMVYRLPADITLVRPGSLLNE
CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
PQVDTSRPDLTPQKIDAPRNPFRGVKMCKPKKPLQPVYATRFFSVIGESITQSSVVAWFQ
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HQWQGWGKIAAPKNVSAKTD
HHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PQFRRSILTLATLLAFAHPVFAGKLAIVIDDFGYRPHTENQVLALPPNISVAVLPNAPH
CHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCCCCCEEEEECCCCEEEEECCCCC
AREMATKAHNSGHEVLIHLPMAPLSKQPLEKDTLRPDMSSDEIERIIREAVNNVPYAVGL
HHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCEEEEC
NNHMGSAMTSSLFGMQKVMQALEHYNLYFLDSMTIGNSQAMRAASGTGVKVIKRKVFLDD
CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCHHHHHHCCCCCHHHHHHHHHHCC
TQNEADIRRQFNRAIELARRNGSAIAIGHPHPATVRVLQQMVYRLPADITLVRPGSLLNE
CCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC
PQVDTSRPDLTPQKIDAPRNPFRGVKMCKPKKPLQPVYATRFFSVIGESITQSSVVAWFQ
CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
HQWQGWGKIAAPKNVSAKTD
HHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]