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The map label for this gene is ycdD [H]

Identifier: 194734938

GI number: 194734938

Start: 2127490

End: 2128065

Strand: Reverse

Name: ycdD [H]

Synonym: SeSA_A2245

Alternate gene names: 194734938

Gene position: 2128065-2127490 (Counterclockwise)

Preceding gene: 194737320

Following gene: 194734321

Centisome position: 45.19

GC content: 46.53

Gene sequence:

>576_bases
ATGAAAAAATATCAGGATATTAAAAATTTCAGACTGATTGACGCGCCTGTAAACAGGGGTAAAACTCAGGCCGAAATAAA
TATAGGTGCATATTTTCTGGAGTCAGAAGACGGGCAGGACTGGTATGAGTGTCAGTCATTATTTTCTGATGATACTGCAA
AAATAATGTACGACCCTGAGGGGGTGATCTGGGGTGTTGTTAATAAGCCAGTCCCGCAACGTGGAAACACATATGCTGTA
TCAATGTTGTGGCCGGTTAATATGTCTGTTGCGGAAATAGACGCTGCTGACTGTCCTGATGATTGCCGTGGTGATGGTAC
GTGGTTATATCAGGACGGTAAAGTCGTTCAGCGGGGTTATTCTCCGGAAGAGCTGCGTAAAAAGGCTGAGGCTGAAAAAA
TTCGTCGCCTTTCTGAAGCTGAATCAGCCATCGCACCACTGGCGCGGGCAGTAAAACTAAAAATTGCCACAGATGAAGAG
ATTAAACGGCTTGAAGCATGGGAACTCTACAGCGTAATGGTTAACCGTGTGGATACAGCTTCCCCTGACTGGCCGGAGGT
GCCGGATGTGGCGTGA

Upstream 100 bases:

>100_bases
GGAAAGATTATCAGGGCGAAAATATTGATGGTATTAATTATGCGCCTTTGCAAAAACGAGTCGGGAATCAGTGGTATACC
GTACAAGGGGGAACGGTATA

Downstream 100 bases:

>100_bases
AGCGCGTCTGGCTTTTACGGATTCCCTGGCTGCGCTGGATTGTTCCGTCGTTCCGGCGCATCCGTGGATTCACGGTTTGG
GGCAACAGACAGATAACTGG

Product: tail fiber assembly protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKKYQDIKNFRLIDAPVNRGKTQAEINIGAYFLESEDGQDWYECQSLFSDDTAKIMYDPEGVIWGVVNKPVPQRGNTYAV
SMLWPVNMSVAEIDAADCPDDCRGDGTWLYQDGKVVQRGYSPEELRKKAEAEKIRRLSEAESAIAPLARAVKLKIATDEE
IKRLEAWELYSVMVNRVDTASPDWPEVPDVA

Sequences:

>Translated_191_residues
MKKYQDIKNFRLIDAPVNRGKTQAEINIGAYFLESEDGQDWYECQSLFSDDTAKIMYDPEGVIWGVVNKPVPQRGNTYAV
SMLWPVNMSVAEIDAADCPDDCRGDGTWLYQDGKVVQRGYSPEELRKKAEAEKIRRLSEAESAIAPLARAVKLKIATDEE
IKRLEAWELYSVMVNRVDTASPDWPEVPDVA
>Mature_191_residues
MKKYQDIKNFRLIDAPVNRGKTQAEINIGAYFLESEDGQDWYECQSLFSDDTAKIMYDPEGVIWGVVNKPVPQRGNTYAV
SMLWPVNMSVAEIDAADCPDDCRGDGTWLYQDGKVVQRGYSPEELRKKAEAEKIRRLSEAESAIAPLARAVKLKIATDEE
IKRLEAWELYSVMVNRVDTASPDWPEVPDVA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tfa family [H]

Homologues:

Organism=Escherichia coli, GI1787637, Length=96, Percent_Identity=40.625, Blast_Score=60, Evalue=8e-11,
Organism=Escherichia coli, GI2367120, Length=96, Percent_Identity=40.625, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003458 [H]

Pfam domain/function: PF02413 Caudo_TAP [H]

EC number: NA

Molecular weight: Translated: 21622; Mature: 21622

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYQDIKNFRLIDAPVNRGKTQAEINIGAYFLESEDGQDWYECQSLFSDDTAKIMYDPE
CCCCHHHCCCEEEECCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCC
GVIWGVVNKPVPQRGNTYAVSMLWPVNMSVAEIDAADCPDDCRGDGTWLYQDGKVVQRGY
CEEEEECCCCCCCCCCEEEEEEEEECCCCCEECCCCCCCCCCCCCCEEEEECCCCEECCC
SPEELRKKAEAEKIRRLSEAESAIAPLARAVKLKIATDEEIKRLEAWELYSVMVNRVDTA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHCCC
SPDWPEVPDVA
CCCCCCCCCCC
>Mature Secondary Structure
MKKYQDIKNFRLIDAPVNRGKTQAEINIGAYFLESEDGQDWYECQSLFSDDTAKIMYDPE
CCCCHHHCCCEEEECCCCCCCCEEEEEEEEEEEECCCCCHHHHHHHHHCCCCEEEEECCC
GVIWGVVNKPVPQRGNTYAVSMLWPVNMSVAEIDAADCPDDCRGDGTWLYQDGKVVQRGY
CEEEEECCCCCCCCCCEEEEEEEEECCCCCEECCCCCCCCCCCCCCEEEEECCCCEECCC
SPEELRKKAEAEKIRRLSEAESAIAPLARAVKLKIATDEEIKRLEAWELYSVMVNRVDTA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHHHCCC
SPDWPEVPDVA
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677609; 1602967; 7920643 [H]