Click here to switch to the map view.

The map label for this gene is cbiD [H]

Identifier: 194734874

GI number: 194734874

Start: 2089213

End: 2090352

Strand: Reverse

Name: cbiD [H]

Synonym: SeSA_A2201

Alternate gene names: 194734874

Gene position: 2090352-2089213 (Counterclockwise)

Preceding gene: 194736816

Following gene: 194734243

Centisome position: 44.39

GC content: 55.79

Gene sequence:

>1140_bases
ATGAGCGAGCTTTCTTTTGACGCGCCGGTCTGGCACCACGGTAAAGCGTTACGTAAAGGATATACCACCGGTTCCTGCGC
GACGGCGGCGGCAAAAGTCGCCGCGCTGATGGTATTGCGTCAACATCTGATTCATCAGGTCTCCATCGTCACGCCGTCGG
GCGTCACGCTATGCCTGAACGTGGAGTCGCCGCACATTGAAGGCCAGCAGGCGATAGCCGCAATTCGTAAAGATGGCGGC
GATGATGTGGATGCCACGCACGGAATGCTGATTTTTGCCCGCGTTACGCTCAACGACAGCGGTGAGATTACGCTCACTGG
CGGCGAAGGTATTGGTACGGTAACGCGTAAAGGGGTTGGGCTGCCGCTCGGGAGTGCCGCCATCAATCGTACGCCGCGCC
ATACCATTGAGTCAGCGGTGCGCGAAGCGATAGGCCCGGCGCGTGGGGCCGATGTGGAGATTTTTGCCCCGGAAGGCGAA
GCGCGGGCGCAAAAAACGTATAACTCGCGGCTTGGCATTCTTGGCGGCATTTCCATTATTGGCACTACCGGCATTGTGAC
ACCGATGTCGGAAGAAAGCTGGAAACGCTCGCTATCGCTGGAACTGGAGATCAAACGGGCGTCAGGATTAACGCGGGTGA
TACTCGTGCCGGGCAACCACGGCGAACGGTTTGTTCGCGAACAAATGGGCGTCGACACACAGGCGGTCGTCACCATGAGC
AATTTTGTCGGCTACATGATTGAAGAGGCGGTACGGCTGGGATTTTGCCAGATAGTGCTGGTGGGGCATCCTGGAAAATT
GATCAAAATCGCCGCCGGGATCTTTCATACCCATAGCCATATTGCCGATGCGCGCATGGAAACGCTGGTCGCGCATTTAG
CTTTACTGGGCGCGCCGCTGGAGTTACTCACCCTGGTCAGCGATTGCGATACCACTGAAGCGGCAATGGAGCACATTGAA
GCATATGGCTTCGGGCATATCTATAACCATCTTGCCAGGCGTATTTGTTTGCGAGTCATGCAGATGCTGCGTTTTACCAA
AACGCCGCCTGTCTGCGACGCCATCCTGTTTTCTTTTGATAACCATATTCTCGGCAGTAATCGTCCCGTCGACGAGATTG
CTAAGGAGCTGCAATGCTAA

Upstream 100 bases:

>100_bases
ATAGCCATTTCCCCGCGGTTGCCGCGTTAGGGCGTAAAGGCGGCAGTAACGTGGCTGCCGCTATCGTCAATGCGCTGCTC
TATCACCTCCGGGAGGCCTG

Downstream 100 bases:

>100_bases
CGGTCGTGGGAATGGGGCCCGCCGGACGGCATTTGATGACCCCTGCGGCGCTGGAAGCGATAAACCATGCCGATGCGCTG
GCAGGCGGTAAACGCCATTT

Product: cobalt-precorrin-6A synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MSELSFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVLRQHLIHQVSIVTPSGVTLCLNVESPHIEGQQAIAAIRKDGG
DDVDATHGMLIFARVTLNDSGEITLTGGEGIGTVTRKGVGLPLGSAAINRTPRHTIESAVREAIGPARGADVEIFAPEGE
ARAQKTYNSRLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRASGLTRVILVPGNHGERFVREQMGVDTQAVVTMS
NFVGYMIEEAVRLGFCQIVLVGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPLELLTLVSDCDTTEAAMEHIE
AYGFGHIYNHLARRICLRVMQMLRFTKTPPVCDAILFSFDNHILGSNRPVDEIAKELQC

Sequences:

>Translated_379_residues
MSELSFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVLRQHLIHQVSIVTPSGVTLCLNVESPHIEGQQAIAAIRKDGG
DDVDATHGMLIFARVTLNDSGEITLTGGEGIGTVTRKGVGLPLGSAAINRTPRHTIESAVREAIGPARGADVEIFAPEGE
ARAQKTYNSRLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRASGLTRVILVPGNHGERFVREQMGVDTQAVVTMS
NFVGYMIEEAVRLGFCQIVLVGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPLELLTLVSDCDTTEAAMEHIE
AYGFGHIYNHLARRICLRVMQMLRFTKTPPVCDAILFSFDNHILGSNRPVDEIAKELQC
>Mature_378_residues
SELSFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVLRQHLIHQVSIVTPSGVTLCLNVESPHIEGQQAIAAIRKDGGD
DVDATHGMLIFARVTLNDSGEITLTGGEGIGTVTRKGVGLPLGSAAINRTPRHTIESAVREAIGPARGADVEIFAPEGEA
RAQKTYNSRLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRASGLTRVILVPGNHGERFVREQMGVDTQAVVTMSN
FVGYMIEEAVRLGFCQIVLVGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPLELLTLVSDCDTTEAAMEHIEA
YGFGHIYNHLARRICLRVMQMLRFTKTPPVCDAILFSFDNHILGSNRPVDEIAKELQC

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A [H]

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002748 [H]

Pfam domain/function: PF01888 CbiD [H]

EC number: NA

Molecular weight: Translated: 40787; Mature: 40656

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSELSFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVLRQHLIHQVSIVTPSGVTLCLN
CCCCCCCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEE
VESPHIEGQQAIAAIRKDGGDDVDATHGMLIFARVTLNDSGEITLTGGEGIGTVTRKGVG
CCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCHHHCCCC
LPLGSAAINRTPRHTIESAVREAIGPARGADVEIFAPEGEARAQKTYNSRLGILGGISII
CCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCHHCCHHEE
GTTGIVTPMSEESWKRSLSLELEIKRASGLTRVILVPGNHGERFVREQMGVDTQAVVTMS
ECCCCCCCCCHHHHHHCEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHH
NFVGYMIEEAVRLGFCQIVLVGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPL
HHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ELLTLVSDCDTTEAAMEHIEAYGFGHIYNHLARRICLRVMQMLRFTKTPPVCDAILFSFD
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
NHILGSNRPVDEIAKELQC
CCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure 
SELSFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVLRQHLIHQVSIVTPSGVTLCLN
CCCCCCCCCHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEECCCCEEEEEE
VESPHIEGQQAIAAIRKDGGDDVDATHGMLIFARVTLNDSGEITLTGGEGIGTVTRKGVG
CCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCCEEEECCCCCCCHHHCCCC
LPLGSAAINRTPRHTIESAVREAIGPARGADVEIFAPEGEARAQKTYNSRLGILGGISII
CCCCHHHHCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCHHHHHHHHHCCCCHHCCHHEE
GTTGIVTPMSEESWKRSLSLELEIKRASGLTRVILVPGNHGERFVREQMGVDTQAVVTMS
ECCCCCCCCCHHHHHHCEEEEEEEEECCCCEEEEEEECCCCHHHHHHHHCCCHHHHHHHH
NFVGYMIEEAVRLGFCQIVLVGHPGKLIKIAAGIFHTHSHIADARMETLVAHLALLGAPL
HHHHHHHHHHHHHCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
ELLTLVSDCDTTEAAMEHIEAYGFGHIYNHLARRICLRVMQMLRFTKTPPVCDAILFSFD
HHHHHHHCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
NHILGSNRPVDEIAKELQC
CCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA