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The map label for this gene is rfbD [H]

Identifier: 194734583

GI number: 194734583

Start: 853136

End: 853906

Strand: Direct

Name: rfbD [H]

Synonym: SeSA_A0879

Alternate gene names: 194734583

Gene position: 853136-853906 (Clockwise)

Preceding gene: 194734004

Following gene: 194737777

Centisome position: 18.12

GC content: 35.67

Gene sequence:

>771_bases
ATGAATGATTTGAAAGAAGCTCTGGCCAGGCACCAACTTTGGATTTCGCTAGGTTGGAATGATGTCCTGGGACGATACCG
GCGATCGGTGTTAGGGCCTTTTTGGATAACGATTTCGATGGGGGTCACCATATCAGCAATGGGACCTCTTTACGGTTCGC
TGTTCAGTTCTGGTTCCGAAAATTTTATCATGCATCTTACTTTAGGTATGATCTTTTGGGCCTTTCTATCAGCAACTATT
AATGAGTCATGCGGAATATTTAATGAGTCCGCATCAATTATTAAACAATCTGACCTTCCGCTATATTTATATATATTACG
TGTTTTCTATCGGCAGTTTATGATTATGTTGCATAATTTTATCATTATACCTTTCGTGATTTTTTTTACCAATACATCGG
TAAATCTTGATATTCTCCTTTTTATACCTGCAATTATAATAACATCCATCTCATTAATTTCTACAGGTATGATTCTCGCC
ATTTTTTGCACAAGATATCGTGATATGGGACCGGTTGTTCAAAGTGTAGTAACGTTGTGTTTTTTTATAACTCCTATCAT
CTGGACATCGGAACAATTACCAAAGGGAAGAAAGGAATTTGTTGATTATAATATTTTTTATTACTTTATGGAGATGCTCA
GGAAACCACTAATGGGAACTGTACCAGATGTAACTATATGGTTTTACACAATAATAACCTCTATTATTATGTTGATGGTC
TCAACCTTAGTGTTGACTAAATATCGCTCAAGAATCGTATACTGGTTATAA

Upstream 100 bases:

>100_bases
GTGTTTAGATAAATAGTATGTAAATATTATAGAAAATAAATAAGTTATATTTTCATATCGTTAAAGAATAAGTTCTTCAG
GTAAAGGTGACACGGAAACA

Downstream 100 bases:

>100_bases
TTAATGAAAATCTCTTGCAAAAACGTTGGCGTAATACTCCCTATATTTAACTCCAGCCACCGTTCATTTAAAAAAACTTT
TTTACAGGCTGCTTCAGGTG

Product: O-antigen export system, permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MNDLKEALARHQLWISLGWNDVLGRYRRSVLGPFWITISMGVTISAMGPLYGSLFSSGSENFIMHLTLGMIFWAFLSATI
NESCGIFNESASIIKQSDLPLYLYILRVFYRQFMIMLHNFIIIPFVIFFTNTSVNLDILLFIPAIIITSISLISTGMILA
IFCTRYRDMGPVVQSVVTLCFFITPIIWTSEQLPKGRKEFVDYNIFYYFMEMLRKPLMGTVPDVTIWFYTIITSIIMLMV
STLVLTKYRSRIVYWL

Sequences:

>Translated_256_residues
MNDLKEALARHQLWISLGWNDVLGRYRRSVLGPFWITISMGVTISAMGPLYGSLFSSGSENFIMHLTLGMIFWAFLSATI
NESCGIFNESASIIKQSDLPLYLYILRVFYRQFMIMLHNFIIIPFVIFFTNTSVNLDILLFIPAIIITSISLISTGMILA
IFCTRYRDMGPVVQSVVTLCFFITPIIWTSEQLPKGRKEFVDYNIFYYFMEMLRKPLMGTVPDVTIWFYTIITSIIMLMV
STLVLTKYRSRIVYWL
>Mature_256_residues
MNDLKEALARHQLWISLGWNDVLGRYRRSVLGPFWITISMGVTISAMGPLYGSLFSSGSENFIMHLTLGMIFWAFLSATI
NESCGIFNESASIIKQSDLPLYLYILRVFYRQFMIMLHNFIIIPFVIFFTNTSVNLDILLFIPAIIITSISLISTGMILA
IFCTRYRDMGPVVQSVVTLCFFITPIIWTSEQLPKGRKEFVDYNIFYYFMEMLRKPLMGTVPDVTIWFYTIITSIIMLMV
STLVLTKYRSRIVYWL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbE [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29647; Mature: 29647

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLKEALARHQLWISLGWNDVLGRYRRSVLGPFWITISMGVTISAMGPLYGSLFSSGSE
CCHHHHHHHHHHHHEEECHHHHHHHHHHHHHCHHHEEEECCEEEEHHHHHHHHHHCCCCC
NFIMHLTLGMIFWAFLSATINESCGIFNESASIIKQSDLPLYLYILRVFYRQFMIMLHNF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
IIIPFVIFFTNTSVNLDILLFIPAIIITSISLISTGMILAIFCTRYRDMGPVVQSVVTLC
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FFITPIIWTSEQLPKGRKEFVDYNIFYYFMEMLRKPLMGTVPDVTIWFYTIITSIIMLMV
HHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
STLVLTKYRSRIVYWL
HHHHHHHHHHHHEECC
>Mature Secondary Structure
MNDLKEALARHQLWISLGWNDVLGRYRRSVLGPFWITISMGVTISAMGPLYGSLFSSGSE
CCHHHHHHHHHHHHEEECHHHHHHHHHHHHHCHHHEEEECCEEEEHHHHHHHHHHCCCCC
NFIMHLTLGMIFWAFLSATINESCGIFNESASIIKQSDLPLYLYILRVFYRQFMIMLHNF
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
IIIPFVIFFTNTSVNLDILLFIPAIIITSISLISTGMILAIFCTRYRDMGPVVQSVVTLC
HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
FFITPIIWTSEQLPKGRKEFVDYNIFYYFMEMLRKPLMGTVPDVTIWFYTIITSIIMLMV
HHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
STLVLTKYRSRIVYWL
HHHHHHHHHHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7692217 [H]