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The map label for this gene is ydhO [H]

Identifier: 194734354

GI number: 194734354

Start: 1474035

End: 1474856

Strand: Reverse

Name: ydhO [H]

Synonym: SeSA_A1528

Alternate gene names: 194734354

Gene position: 1474856-1474035 (Counterclockwise)

Preceding gene: 194736408

Following gene: 194736173

Centisome position: 31.32

GC content: 51.46

Gene sequence:

>822_bases
GTGGCGCGGATAAACAAAATCTCGATCACGCTCTGTGCTTTACTTTTTACTACTCTCCCTTTTACGCCAATGGCCCATGC
TTCCAGGCAAGCCAAAGCGACGCCTGCTGTTTCTCATGTCACGAAAACGGCAGATAAAAAGAAAAGCACAACGAAAAAGA
TCAGTAAGACCAGCAAAAAAAACGTAAAAAAAACCTCAAAAACCAGCCGTTCTTCTTCCGCTTCTACGCCAAAACGTACC
ACCGCCTCCACGAAATCTCGTCATACGACGCATCGTCGTAACAGAACCGCGCCCACGTCAATCGCCGCCCTCGACGTAAC
GGAAAAATGCACGACGCGTAAAGGCCGTAAGCCGCACTGCGTGAAGGGGAAAGGAACATTGCCGGTCTCTATTGCCGATG
CGCATCGTGCAAAAGTACAAAAAGCGACGAAAACCGCGATGTCCAAACTCATGAATCAGATTGGTAAACCGTATCACTGG
GGAGGCGCGTCGCCGCGCACCGGTTTTGATTGCAGCGGTCTGGTTTATTATGCCTATAAAGATTTAGTGAAGATCCGTAT
CCCCCGAACGGCGAATGAGATGTATCACCTGCGTGACGCGGCGCCCATTGAGCGTAGCGAGTTGAAAAACGGCGATCTGG
TGTTCTTTCGTACGCAGGGGCGCGGCACCGCCGATCACGTTGGCGTCTATGTCGGCAACGGTAAGTTTATCCAGTCTCCG
CGCAGCGGTCAGGAAATTAAGATCACCTCACTGAACGAAGAGTACTGGCAGCGTCATTATGTCGGCGCCCGTCGGGTGAT
GACGCCTAAAACAATTCGCTAA

Upstream 100 bases:

>100_bases
CAAAAGCAATTACCAATCTGTGCTTTTGTAGATTAGAATTATCAGGTTTTGTAAATCATACGCAGGCATGAATCGCCTGC
CTTTAACAGAGGATTGCTCA

Downstream 100 bases:

>100_bases
TATTTTATCCTGTCGTTTAACGACAGGATAACTTCTTCTTTTGCGCCACCTCTCAATTTGCTACCCTATCCTTACGCGCA
CCAGGGTTATTGTGCGTGCG

Product: NlpC/P60 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 272

Protein sequence:

>273_residues
MARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTSRSSSASTPKRT
TASTKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHW
GGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSP
RSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR

Sequences:

>Translated_273_residues
MARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTSRSSSASTPKRT
TASTKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHW
GGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSP
RSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
>Mature_272_residues
ARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTSRSSSASTPKRTT
ASTKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHWG
GASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPR
SGQEIKITSLNEEYWQRHYVGARRVMTPKTIR

Specific function: Unknown

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

Organism=Escherichia coli, GI1787944, Length=279, Percent_Identity=70.6093189964158, Blast_Score=395, Evalue=1e-111,
Organism=Escherichia coli, GI1786421, Length=267, Percent_Identity=33.7078651685393, Blast_Score=175, Evalue=3e-45,
Organism=Escherichia coli, GI1788501, Length=125, Percent_Identity=37.6, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788001, Length=126, Percent_Identity=34.9206349206349, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30312; Mature: 30181

Theoretical pI: Translated: 11.41; Mature: 11.41

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKK
CCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NVKKTSKTSRSSSASTPKRTTASTKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHC
HHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCCCCE
VKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHWGGASPRTGFDCSGLVYYAYK
ECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHEEC
DLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSP
CEEEEECCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEEEECCCEEEECC
RSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
CCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC
>Mature Secondary Structure 
ARINKISITLCALLFTTLPFTPMAHASRQAKATPAVSHVTKTADKKKSTTKKISKTSKK
CCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NVKKTSKTSRSSSASTPKRTTASTKSRHTTHRRNRTAPTSIAALDVTEKCTTRKGRKPHC
HHHHHHHHCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCCEEEEEECHHHHHHCCCCCCCE
VKGKGTLPVSIADAHRAKVQKATKTAMSKLMNQIGKPYHWGGASPRTGFDCSGLVYYAYK
ECCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCHHHEEC
DLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSP
CEEEEECCCCHHHHHHHHCCCCCCHHHCCCCCEEEEEECCCCCHHHEEEEECCCEEEECC
RSGQEIKITSLNEEYWQRHYVGARRVMTPKTIR
CCCCEEEEEECCHHHHHHHHHCHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]