| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is rnfC [H]
Identifier: 194734341
GI number: 194734341
Start: 1495486
End: 1497684
Strand: Reverse
Name: rnfC [H]
Synonym: SeSA_A1555
Alternate gene names: 194734341
Gene position: 1497684-1495486 (Counterclockwise)
Preceding gene: 194738361
Following gene: 194733975
Centisome position: 31.8
GC content: 59.89
Gene sequence:
>2199_bases ATGCTTAAACTATTTTCCGCTTTCAGAAAAGATAAAATCTGGGATTTCGACGGTGGTATTCATCCGCCCGAAATGAAGAC CCAGTCAAACGGCACGCCGCTGCGCCAGGTGCCTTTAGCGCCGCGCTTCGTTATCCCCTTAAAACAGCACATTGGCGCTG AGGGAGAGCTGTGCGTTAGCGTCGGCGATCGCGTGCTGCGCGGCCAGGCGCTTACCCGTGGACGTGGGAGAATGCTGCCG GTACACGCGCCCACCTCCGGGACGGTTATCGCTATTGCGCCCCACTCGACGGCGCATCCTTCGGCGCTGGCGGAGTTAAG CGTCATCATTGATGCCGACGGCGAGGACCGCTGGATTGAACGCGAGGGCTGGTCTGATTACCGCGCCCACAGCCGTGAAG CGCTCATTGAACGCATTCATCAGTATGGCGTTGCCGGGCTTGGCGGCGCGGGGTTTCCCACCGGCGTTAAATTGCAGGGC GGCGGCGATAAAATCACCACGCTTATTATCAATGCCGCAGAGTGCGAACCTTACATTACGGCGGACGATCGTCTGATGCA GGACTGCGCCGCGCAGATTGTGGAAGGTATTCGCATCCTGGCGCATATTCTGCAACCGCGTGAGGTTTTAATCGGCATTG AAGATAACAAACCGCAGGCTATTTCCATGCTGCGCGCCGTACTGGCTGACGCCCACGATATTTCGTTACGTGTGATCCCA ACCAAATACCCTTCCGGCGGCGCAAAACAGCTCACCCAAATACTGACGGGAAAACAGGTTCCCCACGGCGGGCGCTCCTC TGATATTGGCGTGCTGATGCAAAACGTCGGTACGGCTTATGCCGTTAAACGCGCCGTGGTTGACGGCGAACCGATCACAG AACGCGTTGTCACCTTAACGGGTGAAGCGGTAAGCCGTCCGGGTAACGTCTGGGCGCGGCTCGGCACTCCCGTTCGTCAT TTGCTTAACGATGCCGGGTTCTGCCCTTCTGCTGACCAGATGGTCATCATGGGCGGCCCGTTGATGGGATTCACCCTTCC CTGGCTTGACGTACCGGTCGTAAAAATCACCAACTGCTTGCTGGCGCCATCCGTGACTGAAATGGGAGCGCCTCAGGAAG AGAAAAGCTGTATTCGTTGCAGTGCTTGCGCTGACGCTTGCCCTGCCGACCTTTTACCGCAGCAGCTTTATTGGTTCAGC AAAGGGCAGCAGCATGACAAGGCTACCGCTCACCATATTGCTGATTGTATAGAATGCGGCGCCTGCGCCTGGGTCTGCCC CAGTAATATTCCGCTCGTCCAATATTTCCGTCAGGAAAAAGCGGAGATTAATGCGATCAGGCTTGAAGAAAAACGCGCCG CCGAAGCCAAAGCACGTTTTGAGGCTCGTCAGGCAAGACTGGAGCGCGAAAAAGCCGCCCGCCTTGCACGTCATAAGAGC GCAGCGGTACAACCAGCGGCAAAAGATCAGGATGCCATTGCCGCTGCGCTGGCGCGGGTAAAAGAGAAACAGGCGCAGGC CACGCAACCGGTGGTTATTCAGGCGGGTAGTCTGCCAGACAATAGCGCCGTCATCGCGGCCCGTGAAGCGCGTAAAGCGC AAGCGCGCGCTAAACAAGCCGCTCATCCGATGGCTGACAGCGCGATACCCGGCGACGACCCGCGTAAAGCTGCAGTGGAG GCAGCCATCGCCCGCGCCAAAGCCCGTAAGCAGGAGCAGCAGGCCGGAAGCGAACCTGCCGAACCGGTCGATCCGCGTAA AGCCGCGGTGGAGGCGGCTATCGCTCGCGCCAAAGCCCGTAAGCAGGAGCAGCAGGCCGGAAGCGAACCTGCCGAACCGG TCGATCCGCGCAAAGCCGCGGTGGAAGCGGCTATCGCCCGCGCCAAAGCCCGCAAGCAGGAGAAGCAGGCCGGAAGCGAA CCTGCCGAACCGGTCGATCCGCGTAAAGCCGCAGTGGAAGCGGCTATCGACCGCGCCAAAGCCCGCAAGCAGGAGCAGCA GGCCGGAAGCGAACCGGTCGATCCGCGCAAAGCCGCGGTGGAGGCGGCTATCGCCCGCGCCAAAGCCCGCAAGCAGGAGC AGCAGGCCGGAAGCGAACCTGTCGAACCGGCCGACCCGCGTAAAGCCGCGGTTGCTGCGGCGATCGCCCGCGTTCAGGCA AAAAAAGCAGCACAGCAGCAGGTAGTTAACGAGGATTAA
Upstream 100 bases:
>100_bases CCGACGCACTGCATCGAATTACGTCCGGTGAATGAGACGCCCGACAGTTGGAAATGGGATTTGAACACCATTCCCGTTCG CATCATTCCCGTGGAACAAC
Downstream 100 bases:
>100_bases ATGGTATTCAGAATCGCAAGCTCGCCTTATACCCATAACCAGCGCCAGACATCGCGAATCATGTTGCTGGTATTAATCGC CGCTCTGCCGGGGATTGCCG
Product: electron transport complex protein RnfC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 732; Mature: 732
Protein sequence:
>732_residues MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG GGDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLTGEAVSRPGNVWARLGTPVRH LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQAAHPMADSAIPGDDPRKAAVE AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEKQAGSE PAEPVDPRKAAVEAAIDRAKARKQEQQAGSEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEPADPRKAAVAAAIARVQA KKAAQQQVVNED
Sequences:
>Translated_732_residues MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG GGDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLTGEAVSRPGNVWARLGTPVRH LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQAAHPMADSAIPGDDPRKAAVE AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEKQAGSE PAEPVDPRKAAVEAAIDRAKARKQEQQAGSEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEPADPRKAAVAAAIARVQA KKAAQQQVVNED >Mature_732_residues MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLP VHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG GGDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLTGEAVSRPGNVWARLGTPVRH LLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFS KGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQAAHPMADSAIPGDDPRKAAVE AAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEKQAGSE PAEPVDPRKAAVEAAIDRAKARKQEQQAGSEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEPADPRKAAVAAAIARVQA KKAAQQQVVNED
Specific function: May be part of a membrane complex involved in electron transport [H]
COG id: COG4656
COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]
Homologues:
Organism=Escherichia coli, GI1787916, Length=740, Percent_Identity=87.1621621621622, Blast_Score=1087, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017896 - InterPro: IPR017900 - InterPro: IPR010208 - InterPro: IPR012285 - InterPro: IPR009051 - InterPro: IPR011538 - InterPro: IPR019554 [H]
Pfam domain/function: PF01512 Complex1_51K; PF10531 SLBB [H]
EC number: NA
Molecular weight: Translated: 78435; Mature: 78435
Theoretical pI: Translated: 9.03; Mature: 9.03
Prosite motif: PS00198 4FE4S_FERREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVS CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCEEHH VGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIE HHHHHHHCHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCCCCC REGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQGGGDKITTLIINAAECEPYIT CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC ADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLT CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHEEC GEAVSRPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH LAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQHDKATAHHIADCIECG HCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC ACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS CEEEECCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQA HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHH AHPMADSAIPGDDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKAR CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH KQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEKQAGSEPAEPVDPRKAAVEAAIDRAK HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH ARKQEQQAGSEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEPADPRKAAVAAAIARVQA HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH KKAAQQQVVNED HHHHHHHHCCCC >Mature Secondary Structure MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFVIPLKQHIGAEGELCVS CCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECHHHHCCCCCCEEHH VGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSALAELSVIIDADGEDRWIE HHHHHHHCHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCHHHHEEEEEEECCCCCCCCC REGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQGGGDKITTLIINAAECEPYIT CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCEEEEEEEEHHCCCCEEC ADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKPQAISMLRAVLADAHDISLRVIP CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEE TKYPSGGAKQLTQILTGKQVPHGGRSSDIGVLMQNVGTAYAVKRAVVDGEPITERVVTLT CCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHCCCCCHHHHHHEEC GEAVSRPGNVWARLGTPVRHLLNDAGFCPSADQMVIMGGPLMGFTLPWLDVPVVKITNCL CHHHCCCCHHHHHCCHHHHHHHHHCCCCCCCCCEEEECCCHHHCCCCCCCCCHHHHHHHH LAPSVTEMGAPQEEKSCIRCSACADACPADLLPQQLYWFSKGQQHDKATAHHIADCIECG HCCCHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC ACAWVCPSNIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQARLEREKAARLARHKS CEEEECCCCCHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AAVQPAAKDQDAIAAALARVKEKQAQATQPVVIQAGSLPDNSAVIAAREARKAQARAKQA HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEEHHHHHHHHHHHHHH AHPMADSAIPGDDPRKAAVEAAIARAKARKQEQQAGSEPAEPVDPRKAAVEAAIARAKAR CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH KQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEKQAGSEPAEPVDPRKAAVEAAIDRAK HHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH ARKQEQQAGSEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEPADPRKAAVAAAIARVQA HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH KKAAQQQVVNED HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: 4Fe-4S clusters [C]
Metal ions: Iron-Sulfur [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA