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The map label for this gene is ybfI [H]

Identifier: 194734218

GI number: 194734218

Start: 4641832

End: 4642647

Strand: Reverse

Name: ybfI [H]

Synonym: SeSA_A4782

Alternate gene names: 194734218

Gene position: 4642647-4641832 (Counterclockwise)

Preceding gene: 194734841

Following gene: 194736153

Centisome position: 98.59

GC content: 56.99

Gene sequence:

>816_bases
ATGCCCCTTATCCGAGATATTCACCAACGCTTCTGGCGTCTGCCACAACTGCCGTGGCTGGAACTACGTACCACCAGTGA
AAGCCGTCAGGCCTATAAGCGCCACAGCCACCCACAACTGTCGCTGGGCGCAATCATCGCAGGAGAAACCCGCTGCATCA
GTAACGGGCAAGAGTATCTGTTACGCCCCGGCGAGCTGATCCTGATCCCCCCGCAATCTCCACACAGTTGTAACCCGCTC
CACGAGCGACCACGCAGCTATCATATGCTGTATCTCGATGCGGACTGGTGCCTGACGCAGCTCCCCCATTTGCCGGCGAA
TAGCCGCCTGCATACCACGCAGCCACAGTTGCAGGACCCGCAGCTTTTCCAGCTTTATCAGCAAATTGTGACGTCTATTA
CTCAGCAACAAACCGCCGGACTTCCGGCGCTTATTATCCACCTGTTGCGCGCCCTGCCGCTACAAAGCGCCGACGCCGAA
CCGCCATGCGCCATCAGCCGCCAGTTGGTTGCCCGCTTAGTCAGCAACCTTCAGGAACCGCCGACGCTGGACACACTGGC
GCAGGAGTTTGCGCTCCGTAAGGAGACTCTGATTCGCACTTTTAAGCAGGATACAGGCCTGACTCCTGTCAGCTTTACCA
ATATGGCCCGCATTGAATATGCCCGGCACCGATTGCGCGCCGGGGACGATATTGCCGATGTTGCCTATCAGACCGGTTTC
GCCGATCAAAGTCATTTCCACAAAACCTTCGTCAGCTACACGGCGGCAACGCCGCGTCAGTACGCGCAGAACAGATCAAT
ATCCGACAATAAATAG

Upstream 100 bases:

>100_bases
ATTTATCGGGATCCAGTTGCCGGAAGACGAGATCAGAGCGGCATTTGCGGGGTTAAGGAAGTAAACGGGCGCAGAAAAGC
CGGGCCGCACAGGAGATTGT

Downstream 100 bases:

>100_bases
CGCATCCGCAGGTATAGGCTGACCTCAGTATCATCACTGAGGTTACTATGGAACAGGTTACAACGTTATTTCCTCCGGCG
TTTCCCGCACTGGCGCTGGC

Product: negative transcriptional regulator of cel operon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 271; Mature: 270

Protein sequence:

>271_residues
MPLIRDIHQRFWRLPQLPWLELRTTSESRQAYKRHSHPQLSLGAIIAGETRCISNGQEYLLRPGELILIPPQSPHSCNPL
HERPRSYHMLYLDADWCLTQLPHLPANSRLHTTQPQLQDPQLFQLYQQIVTSITQQQTAGLPALIIHLLRALPLQSADAE
PPCAISRQLVARLVSNLQEPPTLDTLAQEFALRKETLIRTFKQDTGLTPVSFTNMARIEYARHRLRAGDDIADVAYQTGF
ADQSHFHKTFVSYTAATPRQYAQNRSISDNK

Sequences:

>Translated_271_residues
MPLIRDIHQRFWRLPQLPWLELRTTSESRQAYKRHSHPQLSLGAIIAGETRCISNGQEYLLRPGELILIPPQSPHSCNPL
HERPRSYHMLYLDADWCLTQLPHLPANSRLHTTQPQLQDPQLFQLYQQIVTSITQQQTAGLPALIIHLLRALPLQSADAE
PPCAISRQLVARLVSNLQEPPTLDTLAQEFALRKETLIRTFKQDTGLTPVSFTNMARIEYARHRLRAGDDIADVAYQTGF
ADQSHFHKTFVSYTAATPRQYAQNRSISDNK
>Mature_270_residues
PLIRDIHQRFWRLPQLPWLELRTTSESRQAYKRHSHPQLSLGAIIAGETRCISNGQEYLLRPGELILIPPQSPHSCNPLH
ERPRSYHMLYLDADWCLTQLPHLPANSRLHTTQPQLQDPQLFQLYQQIVTSITQQQTAGLPALIIHLLRALPLQSADAEP
PCAISRQLVARLVSNLQEPPTLDTLAQEFALRKETLIRTFKQDTGLTPVSFTNMARIEYARHRLRAGDDIADVAYQTGFA
DQSHFHKTFVSYTAATPRQYAQNRSISDNK

Specific function: Positive Activator Of Genes Required For L-Rhamnose Utilization, Probably Of The Rhamnose Transporter Gene (Rhat). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790339, Length=99, Percent_Identity=37.3737373737374, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 30980; Mature: 30849

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLIRDIHQRFWRLPQLPWLELRTTSESRQAYKRHSHPQLSLGAIIAGETRCISNGQEYL
CCHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCEEEEEEEECCCHHHCCCHHHH
LRPGELILIPPQSPHSCNPLHERPRSYHMLYLDADWCLTQLPHLPANSRLHTTQPQLQDP
CCCCCEEEECCCCCCCCCHHHHCCCCEEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCC
QLFQLYQQIVTSITQQQTAGLPALIIHLLRALPLQSADAEPPCAISRQLVARLVSNLQEP
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
PTLDTLAQEFALRKETLIRTFKQDTGLTPVSFTNMARIEYARHRLRAGDDIADVAYQTGF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
ADQSHFHKTFVSYTAATPRQYAQNRSISDNK
CCHHHHHHHHHHHHHCCHHHHHHCCCCCCCC
>Mature Secondary Structure 
PLIRDIHQRFWRLPQLPWLELRTTSESRQAYKRHSHPQLSLGAIIAGETRCISNGQEYL
CHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHCCCCCEEEEEEEECCCHHHCCCHHHH
LRPGELILIPPQSPHSCNPLHERPRSYHMLYLDADWCLTQLPHLPANSRLHTTQPQLQDP
CCCCCEEEECCCCCCCCCHHHHCCCCEEEEEEECHHHHHHCCCCCCCCCCCCCCCCCCCC
QLFQLYQQIVTSITQQQTAGLPALIIHLLRALPLQSADAEPPCAISRQLVARLVSNLQEP
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
PTLDTLAQEFALRKETLIRTFKQDTGLTPVSFTNMARIEYARHRLRAGDDIADVAYQTGF
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHCC
ADQSHFHKTFVSYTAATPRQYAQNRSISDNK
CCHHHHHHHHHHHHHCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]