Click here to switch to the map view.

The map label for this gene is araJ [H]

Identifier: 194734130

GI number: 194734130

Start: 457742

End: 458968

Strand: Reverse

Name: araJ [H]

Synonym: SeSA_A0450

Alternate gene names: 194734130

Gene position: 458968-457742 (Counterclockwise)

Preceding gene: 194735358

Following gene: 194736892

Centisome position: 9.75

GC content: 55.66

Gene sequence:

>1227_bases
GTGACAATTCACAGCCACAGCGCGCAACATGCGCCTTTATTTTCGGCAGGTGGTATGAAAAAAGTTATTTTTTCTTTGGC
GCTGGGTACGTTCGGACTGGGGATGGCCGAGTTTGGCATTATGGGCGTGCTGACGGAGCTGGCACGCGATGTCGGGATAA
CGATTCCCGCCGCCGGGCATATGATCTCGTTTTACGCCTTCGGCGTCGTGCTGGGCGCGCCTGTTATGGCGCTCTTTTCC
AGCCGCTTTTCGCTTAAACATATACTGCTGTTTCTGGTCACGCTGTGCGTGATGGGCAATGCCATATTTACCTTTTCCTC
GTCATATCTGATGCTCGCCGTCGGCAGACTGGTTTCCGGCTTTCCGCACGGCGCCTTTTTTGGCGTCGGCGCCATTGTCC
TGTCAAAGATTATCCGCCCCGGGAAAGTCACCGCCGCCGTCGCGGGTATGGTTTCAGGAATGACGGTGGCGAATCTGGTG
GGCATTCCGGTCGGCACTTACCTGAGCCAGGAATTTAGCTGGCGCTACACCTTTTTATTGATCGCGGTTTTCAACATCGC
TGTGCTCACCGCAATTTTCTTCTGGGTGCCGGATATCCGTGACAAAGCCCAAGGCAGCCTGCGCGAGCAGTTCCACTTCT
TGCGTAGTCCTGCACCGTGGCTCATTTTCGCCGCCACGATGTTCGGCAATGCGGGCGTTTTTGCCTGGTTCAGCTATATC
AAGCCATTTATGATGTACATCTCCGGTTTTTCGGAGACGAGCATGACGTTTATTATGATGCTGGTCGGGCTGGGGATGGT
GTTAGGCAATCTGTTAAGCGGCAAACTCTCCGGCAGATATACTCCGCTGCGCATCGCGGTAGTGACTGACCTCATTATCG
TGCTCTCTCTCATGGCGCTCTTTTTCTTCAGCGGATACAAAACGGCATCGCTGACTTTCGCGTTTATCTGCTGCGCTGGT
CTGTTTGCGCTCTCTGCGCCGCTGCAAATCCTGCTGCTGCAAAACGCCAAAGGCGGCGAACTGCTGGGCGCGGCGGGAGG
GCAAATCGCCTTTAATCTCGGTAGCGCGATTGGCGCCTGGTGCGGCGGACTGATGCTGACGCTAGGTTTTGCGTACCACT
ACGTGGCGCTTCCCGCCGCCCTGCTCTCGTTTTCCGCCATGTCGTCGTTGCTGGTATACGGACGTCTAAAACACAAGCAG
CCATCGGTCACGCCGGTTGCCGGATGA

Upstream 100 bases:

>100_bases
CACAGCATACCGTCATGACATAGCATAATAATGAATACACAAAGACGGATAAGGAATGGTATTACCTCGCGCTTATCCGC
AAGCTATACGTTGATTGGCT

Downstream 100 bases:

>100_bases
CGCCATCCGGCTAAAAACGTTACGCCAGCGGCCACAGCCAGGCCGCGCCGCGCACGCCGCTCGAATCGCCATGCCGCGCC
TTACGTACCGGCGTCTCGCA

Product: MFS transport protein AraJ

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 407

Protein sequence:

>408_residues
MTIHSHSAQHAPLFSAGGMKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMISFYAFGVVLGAPVMALFS
SRFSLKHILLFLVTLCVMGNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLV
GIPVGTYLSQEFSWRYTFLLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYI
KPFMMYISGFSETSMTFIMMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLIIVLSLMALFFFSGYKTASLTFAFICCAG
LFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQ
PSVTPVAG

Sequences:

>Translated_408_residues
MTIHSHSAQHAPLFSAGGMKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMISFYAFGVVLGAPVMALFS
SRFSLKHILLFLVTLCVMGNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLV
GIPVGTYLSQEFSWRYTFLLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYI
KPFMMYISGFSETSMTFIMMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLIIVLSLMALFFFSGYKTASLTFAFICCAG
LFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQ
PSVTPVAG
>Mature_407_residues
TIHSHSAQHAPLFSAGGMKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMISFYAFGVVLGAPVMALFSS
RFSLKHILLFLVTLCVMGNAIFTFSSSYLMLAVGRLVSGFPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLVG
IPVGTYLSQEFSWRYTFLLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYIK
PFMMYISGFSETSMTFIMMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLIIVLSLMALFFFSGYKTASLTFAFICCAGL
FALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQP
SVTPVAG

Specific function: May be involved in either the transport or processing of arabinose polymers [H]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=388, Percent_Identity=85.3092783505155, Blast_Score=651, Evalue=0.0,
Organism=Escherichia coli, GI1787947, Length=385, Percent_Identity=31.9480519480519, Blast_Score=173, Evalue=2e-44,
Organism=Escherichia coli, GI145693198, Length=395, Percent_Identity=24.8101265822785, Blast_Score=95, Evalue=6e-21,
Organism=Escherichia coli, GI1787808, Length=258, Percent_Identity=26.3565891472868, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 43476; Mature: 43344

Theoretical pI: Translated: 10.16; Mature: 10.16

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure 
TIHSHSAQHAPLFSAGGMKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGH
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCHH
MISFYAFGVVLGAPVMALFSSRFSLKHILLFLVTLCVMGNAIFTFSSSYLMLAVGRLVSG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCHHHHHHHHHHHHC
FPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLVGIPVGTYLSQEFSWRYTFLL
CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
IAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPAPWLIFAATMFGNAGVFAWFSYI
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCHHHHHHHHH
KPFMMYISGFSETSMTFIMMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLIIVLSLMAL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHH
FFFSGYKTASLTFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNLGSAIGAW
HHHCCCCHHHHHHHHHHHHHHHHHHCCHHEEEEECCCCCCEEECCCCEEEEEHHHHHHHH
CGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQPSVTPVAG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1744033; 9278503 [H]