Click here to switch to the map view.

The map label for this gene is yncD [C]

Identifier: 194335080

GI number: 194335080

Start: 2470168

End: 2472225

Strand: Reverse

Name: yncD [C]

Synonym: Paes_2293

Alternate gene names: 194335080

Gene position: 2472225-2470168 (Counterclockwise)

Preceding gene: 194335087

Following gene: 194335074

Centisome position: 98.38

GC content: 53.06

Gene sequence:

>2058_bases
TTGCTGGCGGTTATTGGTTTTTCAGTCTTCCAGGAATCGAATGCTCAGGAGCTTCCTGCTGAAACACCGTCTTCGGCAAC
TGTTCCATTGAGGGAATTTCAGTTTGAAACCATCGTTGTTACTGCAGATGCCATCGATGATGAGCAGCAGGAGATCGAGA
GTGGCGAACTGAGAACGCACAAGGTGGTCGACCTTGCTGAGATTCTTTCCGACGAGTTGGTGGAGGTTCAGATGATCCGC
AAAAGCGGGTACGGCAACGAGGTGTCTGTGCGAGGCTTTGGCCAGGAGAATATCAAGGTTCTGCTGGACGGGGGGATTCT
CGAAGGGGCCTGCGGCAGCCGCAAGGACCCTTCGCTTTCGCACATCAATATGCTGACTGTGCAGAAACTGACGGTTCAGC
AGGGTCCGTTTGACGTTACAAAACCTGGCTGCCTGGGGGGCTACATTGACGTGGTCACCAGGAAACCCGAGGAAGGGTTT
CATGGGGAGTTGCTGGGCAAGGTCGGCAGTTACGGTTTCCATAGCGGAGGTTTTACAACTACCGGCGGCAGTGACAAGGT
CCAGTGGCTTTTCGGGTACAATTATTCCGAATCAGGACAGTACGAGGATGGAGACGGCAGCAGGCTCTGGAGCGTCCGAG
AGGGCCTGGGGGCTTCCTACAGCGAAGAGGGGCGTGAGGCTCAGTCGTTTCAGAAGCACGATGTCTGGGGTAAACTGCAG
TTCACGCCGAATGAGAACAGCACCATTCTGCTGGAGCATTCCTACGGTAAGGCGAATGATATTCTGACACCGCGGGTTGT
CTTCGATACCGAGGAGGAGCTGACCAATCTCTCAAAGGCGAGCTGGGAGATCCGCAATCTCGGCAAGCTTTCCGAGACGC
TCACCTTGTCTGTCTATCGCAACGAGGTGGATCACGCTCCTTTCCAGGAGTATCGCAATGTAGCCGTACCGAAAAACAAT
GAGGTCGAGTCGGTGATTAGCGGTGGAGCCGTTCAAAACGTGACAGAGACGGATTTTGCAACATTGACCTACGGCATCGA
CTGGTATCACCGGGAGTGGTGGGGAGACGTCTATTACAGCCTGACAGGTCAGAAGATCAATGATGTTCTCATCCCTTCAG
TCCGGTCGCTCAATCTGGGCGGGTATGTCAAGATGGATAAAACGTTCGACAGGCTGTCGCTGGGTTTGGGGTTGAGGTAC
GATCGTTTCCGCCAGGAGGCGGATGAAGAGCTGAAATTTACGAGCGCTGTGACCGACAACAATCGTAACGTTGATCATCT
TTTCGGCGGACATCTGTCGTTCAGATATGTCCTGGGTGATGAGGCGATGCTTTTCGGCGGTGTTGGCCGCAGTTACCGGA
CGCCGACATCGAGTGAACGATATATCCAGGGCAATCCGGGATTTTTCGGCAATCCGGATCTCAAGCCTACGGCCAACACG
GAGTTCGACGTGGGTGTTTTGTACGAGTTCGGAGGGGTGAAGTTCCAGACAAAGGGATTTTATTCCTCTCTTGACGATTA
CATCTACCAGGAAAACAATGTTGCAGGGTATAAGAGCTATACGAACATCGATGCCCATATCTGGGGCGGTGACATCAAGG
CCATTGTCGATCTGAGTGACGGGTTTTCACTGGAAGGCGGAATCGCCTATCAGAAAGGCGTCAAGGAGAGCTTCCCCGAC
AACAACAGCGACGATGATCTGGGCCAGATGGCTCCTTTGAAGGGGATGCTGGCGCTGAATTACAACAGCCACGAAACATT
GAGGGAACACGATCGAGGCCTCTTCGGCTCTATAGAGTGGGTTCATTCGAGTGCCTCGAAGCACGTCGATGCCGATGCCG
GAGAAAAGCCGCTTGAAGCGTGGGATATCATCAACCTGCGCATGGGGTACCGGTATAAATCATACAGTTTGAATGTTGGC
ATGGATAACCTTTTTGATACACAGTATACGGTTGCGAATTCTTATGAATGGGATGTCATCGGCGGAACCGGAGCCAATCC
GGCAATCGTCAGCGAACCGGGCAGGTTCATCTACGCTACTGTCGGCTATGCCTGGTAG

Upstream 100 bases:

>100_bases
GCATTTGCATTTGCAATAATCTGCGGCTTTGACTTAATTTCAGAAAAAATGACAATGATCTATGAGGAAATACAGAAAAT
GTCTTCCGGCTACGCTGGCT

Downstream 100 bases:

>100_bases
GGTTGCCCTGATTTTATTTTGGCGAAATTCTGTTTGCTGTACCAGAAACTCTTCCGGTGTCAGCGTTCCCTATGAGCTGT
GCGGACGGATCGAATGGTAA

Product: TonB-dependent receptor

Products: NA

Alternate protein names: NB-Dependent Copper Receptor; NB Dependent Receptor; Outer Membrane Protein C; NB-Dependent Receptor Protein; Outer Membrane Copper Receptor OprC; Outer-Membrane Heme Receptor; NB-Dependent Receptor Plug; Hemin Receptor; Outer Membrane Insertion C-Terminal Signal; NB-Dependent Haemoglobin/Transferrin/Lactoferrin Receptor; Outer Membrane Heme Receptor; Nb-Dependent Receptor; Outer Membrane Protein Nosa; Nb-Dependent Copper Receptor; NosA Protein

Number of amino acids: Translated: 685; Mature: 685

Protein sequence:

>685_residues
MLAVIGFSVFQESNAQELPAETPSSATVPLREFQFETIVVTADAIDDEQQEIESGELRTHKVVDLAEILSDELVEVQMIR
KSGYGNEVSVRGFGQENIKVLLDGGILEGACGSRKDPSLSHINMLTVQKLTVQQGPFDVTKPGCLGGYIDVVTRKPEEGF
HGELLGKVGSYGFHSGGFTTTGGSDKVQWLFGYNYSESGQYEDGDGSRLWSVREGLGASYSEEGREAQSFQKHDVWGKLQ
FTPNENSTILLEHSYGKANDILTPRVVFDTEEELTNLSKASWEIRNLGKLSETLTLSVYRNEVDHAPFQEYRNVAVPKNN
EVESVISGGAVQNVTETDFATLTYGIDWYHREWWGDVYYSLTGQKINDVLIPSVRSLNLGGYVKMDKTFDRLSLGLGLRY
DRFRQEADEELKFTSAVTDNNRNVDHLFGGHLSFRYVLGDEAMLFGGVGRSYRTPTSSERYIQGNPGFFGNPDLKPTANT
EFDVGVLYEFGGVKFQTKGFYSSLDDYIYQENNVAGYKSYTNIDAHIWGGDIKAIVDLSDGFSLEGGIAYQKGVKESFPD
NNSDDDLGQMAPLKGMLALNYNSHETLREHDRGLFGSIEWVHSSASKHVDADAGEKPLEAWDIINLRMGYRYKSYSLNVG
MDNLFDTQYTVANSYEWDVIGGTGANPAIVSEPGRFIYATVGYAW

Sequences:

>Translated_685_residues
MLAVIGFSVFQESNAQELPAETPSSATVPLREFQFETIVVTADAIDDEQQEIESGELRTHKVVDLAEILSDELVEVQMIR
KSGYGNEVSVRGFGQENIKVLLDGGILEGACGSRKDPSLSHINMLTVQKLTVQQGPFDVTKPGCLGGYIDVVTRKPEEGF
HGELLGKVGSYGFHSGGFTTTGGSDKVQWLFGYNYSESGQYEDGDGSRLWSVREGLGASYSEEGREAQSFQKHDVWGKLQ
FTPNENSTILLEHSYGKANDILTPRVVFDTEEELTNLSKASWEIRNLGKLSETLTLSVYRNEVDHAPFQEYRNVAVPKNN
EVESVISGGAVQNVTETDFATLTYGIDWYHREWWGDVYYSLTGQKINDVLIPSVRSLNLGGYVKMDKTFDRLSLGLGLRY
DRFRQEADEELKFTSAVTDNNRNVDHLFGGHLSFRYVLGDEAMLFGGVGRSYRTPTSSERYIQGNPGFFGNPDLKPTANT
EFDVGVLYEFGGVKFQTKGFYSSLDDYIYQENNVAGYKSYTNIDAHIWGGDIKAIVDLSDGFSLEGGIAYQKGVKESFPD
NNSDDDLGQMAPLKGMLALNYNSHETLREHDRGLFGSIEWVHSSASKHVDADAGEKPLEAWDIINLRMGYRYKSYSLNVG
MDNLFDTQYTVANSYEWDVIGGTGANPAIVSEPGRFIYATVGYAW
>Mature_685_residues
MLAVIGFSVFQESNAQELPAETPSSATVPLREFQFETIVVTADAIDDEQQEIESGELRTHKVVDLAEILSDELVEVQMIR
KSGYGNEVSVRGFGQENIKVLLDGGILEGACGSRKDPSLSHINMLTVQKLTVQQGPFDVTKPGCLGGYIDVVTRKPEEGF
HGELLGKVGSYGFHSGGFTTTGGSDKVQWLFGYNYSESGQYEDGDGSRLWSVREGLGASYSEEGREAQSFQKHDVWGKLQ
FTPNENSTILLEHSYGKANDILTPRVVFDTEEELTNLSKASWEIRNLGKLSETLTLSVYRNEVDHAPFQEYRNVAVPKNN
EVESVISGGAVQNVTETDFATLTYGIDWYHREWWGDVYYSLTGQKINDVLIPSVRSLNLGGYVKMDKTFDRLSLGLGLRY
DRFRQEADEELKFTSAVTDNNRNVDHLFGGHLSFRYVLGDEAMLFGGVGRSYRTPTSSERYIQGNPGFFGNPDLKPTANT
EFDVGVLYEFGGVKFQTKGFYSSLDDYIYQENNVAGYKSYTNIDAHIWGGDIKAIVDLSDGFSLEGGIAYQKGVKESFPD
NNSDDDLGQMAPLKGMLALNYNSHETLREHDRGLFGSIEWVHSSASKHVDADAGEKPLEAWDIINLRMGYRYKSYSLNVG
MDNLFDTQYTVANSYEWDVIGGTGANPAIVSEPGRFIYATVGYAW

Specific function: Probable Receptor, Tonb-Dependent. [C]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 76199; Mature: 76199

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAVIGFSVFQESNAQELPAETPSSATVPLREFQFETIVVTADAIDDEQQEIESGELRTH
CEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEEECCCCCHHHHHHCCCCCHH
KVVDLAEILSDELVEVQMIRKSGYGNEVSVRGFGQENIKVLLDGGILEGACGSRKDPSLS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCEEECCCCCCCCCCCC
HINMLTVQKLTVQQGPFDVTKPGCLGGYIDVVTRKPEEGFHGELLGKVGSYGFHSGGFTT
CEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCEEE
TGGSDKVQWLFGYNYSESGQYEDGDGSRLWSVREGLGASYSEEGREAQSFQKHDVWGKLQ
CCCCCCEEEEEECCCCCCCCCCCCCCCEEEHHHHCCCCCCHHCCHHHHHHHHCCCCEEEE
FTPNENSTILLEHSYGKANDILTPRVVFDTEEELTNLSKASWEIRNLGKLSETLTLSVYR
ECCCCCCEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
NEVDHAPFQEYRNVAVPKNNEVESVISGGAVQNVTETDFATLTYGIDWYHREWWGDVYYS
CCCCCCCHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHCEEEEE
LTGQKINDVLIPSVRSLNLGGYVKMDKTFDRLSLGLGLRYDRFRQEADEELKFTSAVTDN
ECCCCCCCEECCCCEEECCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHEEEEEEECCC
NRNVDHLFGGHLSFRYVLGDEAMLFGGVGRSYRTPTSSERYIQGNPGFFGNPDLKPTANT
CCCCHHEECCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
EFDVGVLYEFGGVKFQTKGFYSSLDDYIYQENNVAGYKSYTNIDAHIWGGDIKAIVDLSD
CCCEEEEEECCCEEEEECCHHHHHHHHHEECCCCCCCCCCCCCEEEEECCCEEEEEECCC
GFSLEGGIAYQKGVKESFPDNNSDDDLGQMAPLKGMLALNYNSHETLREHDRGLFGSIEW
CCCCCCCCHHHHCCHHHCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHCCCCCEEEHH
VHSSASKHVDADAGEKPLEAWDIINLRMGYRYKSYSLNVGMDNLFDTQYTVANSYEWDVI
HHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCEEEEECCEEEEEE
GGTGANPAIVSEPGRFIYATVGYAW
CCCCCCCCEEECCCCEEEEEECCCC
>Mature Secondary Structure
MLAVIGFSVFQESNAQELPAETPSSATVPLREFQFETIVVTADAIDDEQQEIESGELRTH
CEEEEEEHHHCCCCCCCCCCCCCCCCCCCHHHEEEEEEEEEECCCCCHHHHHHCCCCCHH
KVVDLAEILSDELVEVQMIRKSGYGNEVSVRGFGQENIKVLLDGGILEGACGSRKDPSLS
HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCEEECCCCCCCCCCCC
HINMLTVQKLTVQQGPFDVTKPGCLGGYIDVVTRKPEEGFHGELLGKVGSYGFHSGGFTT
CEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHCCCCCCCCCEEE
TGGSDKVQWLFGYNYSESGQYEDGDGSRLWSVREGLGASYSEEGREAQSFQKHDVWGKLQ
CCCCCCEEEEEECCCCCCCCCCCCCCCEEEHHHHCCCCCCHHCCHHHHHHHHCCCCEEEE
FTPNENSTILLEHSYGKANDILTPRVVFDTEEELTNLSKASWEIRNLGKLSETLTLSVYR
ECCCCCCEEEEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEC
NEVDHAPFQEYRNVAVPKNNEVESVISGGAVQNVTETDFATLTYGIDWYHREWWGDVYYS
CCCCCCCHHHHCCCCCCCCCCHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHCEEEEE
LTGQKINDVLIPSVRSLNLGGYVKMDKTFDRLSLGLGLRYDRFRQEADEELKFTSAVTDN
ECCCCCCCEECCCCEEECCCCEEEECCCHHHHHHCCCCCHHHHHHHHHHHEEEEEEECCC
NRNVDHLFGGHLSFRYVLGDEAMLFGGVGRSYRTPTSSERYIQGNPGFFGNPDLKPTANT
CCCCHHEECCCEEEEEEECCCEEEEECCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
EFDVGVLYEFGGVKFQTKGFYSSLDDYIYQENNVAGYKSYTNIDAHIWGGDIKAIVDLSD
CCCEEEEEECCCEEEEECCHHHHHHHHHEECCCCCCCCCCCCCEEEEECCCEEEEEECCC
GFSLEGGIAYQKGVKESFPDNNSDDDLGQMAPLKGMLALNYNSHETLREHDRGLFGSIEW
CCCCCCCCHHHHCCHHHCCCCCCCCCHHHHCCCCCEEEEECCCHHHHHHHCCCCCEEEHH
VHSSASKHVDADAGEKPLEAWDIINLRMGYRYKSYSLNVGMDNLFDTQYTVANSYEWDVI
HHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEEECCCCCCCCCEEEEECCEEEEEE
GGTGANPAIVSEPGRFIYATVGYAW
CCCCCCCCEEECCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA