Click here to switch to the map view.

The map label for this gene is ycfF [C]

Identifier: 194335005

GI number: 194335005

Start: 2398547

End: 2398927

Strand: Reverse

Name: ycfF [C]

Synonym: Paes_2216

Alternate gene names: 194335005

Gene position: 2398927-2398547 (Counterclockwise)

Preceding gene: 194335007

Following gene: 194335004

Centisome position: 95.46

GC content: 50.13

Gene sequence:

>381_bases
ATGTCTTTCACTATTCCAGAGTGTCTTTTTTGCAGGATTGTCGGAGGAGAGATTCCTGCCGATATCATCTACAGCGATGA
GCATGTGATCGCGTTTCGCGATATTGAGCCTGTTGCCGATCATCACATACTCATTATTCCGAAAAAGCATATCGCATCGC
TCAGCCACCTTGCTGAGGAGGATATGACCATTGCCGGTCACATCATGCTTGCAGCCCGAAAGGTTGCCGAAAAGGTCGGT
ATTGCTGAATCAGGCTATCGCCTGGTTTTCAACACCGGGCCGGATTCGCTACAGAGTGTCTTTCACATTCACGGGCATCT
GATTGGCGGACAAAAGATGGGGTGGCCTCCATTTCCCGCCAGTCCGGTCAAGCATGGATAA

Upstream 100 bases:

>100_bases
TATTATTTGGGGGACTCTGTGTACATTGTTAAGGATGAACACTGTCGCCTCTTTTCATGCGGCAGGTCTCGCAGGAATCA
ATTCCAAACCATTGTTGAGT

Downstream 100 bases:

>100_bases
CTCTTTTTGATAATCAGGAACTCTACACGCTATGCATCATCACGATCCTCTTGGCGCATTGAAAGAGCTCGCTGTCGATG
GGCAACGGTTTCGTTTCTAC

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 126; Mature: 125

Protein sequence:

>126_residues
MSFTIPECLFCRIVGGEIPADIIYSDEHVIAFRDIEPVADHHILIIPKKHIASLSHLAEEDMTIAGHIMLAARKVAEKVG
IAESGYRLVFNTGPDSLQSVFHIHGHLIGGQKMGWPPFPASPVKHG

Sequences:

>Translated_126_residues
MSFTIPECLFCRIVGGEIPADIIYSDEHVIAFRDIEPVADHHILIIPKKHIASLSHLAEEDMTIAGHIMLAARKVAEKVG
IAESGYRLVFNTGPDSLQSVFHIHGHLIGGQKMGWPPFPASPVKHG
>Mature_125_residues
SFTIPECLFCRIVGGEIPADIIYSDEHVIAFRDIEPVADHHILIIPKKHIASLSHLAEEDMTIAGHIMLAARKVAEKVGI
AESGYRLVFNTGPDSLQSVFHIHGHLIGGQKMGWPPFPASPVKHG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI4885413, Length=111, Percent_Identity=45.045045045045, Blast_Score=110, Evalue=3e-25,
Organism=Homo sapiens, GI14211923, Length=110, Percent_Identity=44.5454545454545, Blast_Score=110, Evalue=4e-25,
Organism=Homo sapiens, GI189217863, Length=105, Percent_Identity=29.5238095238095, Blast_Score=63, Evalue=5e-11,
Organism=Escherichia coli, GI1787346, Length=108, Percent_Identity=47.2222222222222, Blast_Score=91, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI17506713, Length=111, Percent_Identity=45.045045045045, Blast_Score=111, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6320078, Length=115, Percent_Identity=36.5217391304348, Blast_Score=69, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28574010, Length=111, Percent_Identity=45.045045045045, Blast_Score=107, Evalue=2e-24,
Organism=Drosophila melanogaster, GI24581222, Length=111, Percent_Identity=45.045045045045, Blast_Score=107, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 13796; Mature: 13665

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFTIPECLFCRIVGGEIPADIIYSDEHVIAFRDIEPVADHHILIIPKKHIASLSHLAEE
CCCCCCHHHEEEEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHC
DMTIAGHIMLAARKVAEKVGIAESGYRLVFNTGPDSLQSVFHIHGHLIGGQKMGWPPFPA
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHEEECCCCCCCCCCCC
SPVKHG
CCCCCC
>Mature Secondary Structure 
SFTIPECLFCRIVGGEIPADIIYSDEHVIAFRDIEPVADHHILIIPKKHIASLSHLAEE
CCCCCHHHEEEEECCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEHHHHHHHHHHHHC
DMTIAGHIMLAARKVAEKVGIAESGYRLVFNTGPDSLQSVFHIHGHLIGGQKMGWPPFPA
CCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHEEECCCCCCCCCCCC
SPVKHG
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]