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The map label for this gene is pqqE [H]

Identifier: 194334897

GI number: 194334897

Start: 2283234

End: 2284880

Strand: Reverse

Name: pqqE [H]

Synonym: Paes_2102

Alternate gene names: 194334897

Gene position: 2284880-2283234 (Counterclockwise)

Preceding gene: 194334898

Following gene: 194334896

Centisome position: 90.93

GC content: 33.45

Gene sequence:

>1647_bases
ATGATTATGAAAAGCAAGAAATTTTCTAAAAAAATCTATGATTATTCTGCTTATAAGTATTTGCAAAAACATCCCGGTTA
TGTGGCTGCAAAATGTTCTAAAGGTGGTAGGGCAGAAGTGTTTTGTCTGGAAACTGGAGAAAGAACTGAGATTGAGCCTC
CTGCTGCAAACATGTATTTGAAAAGAGAGTCAATTTCTCGTCAAGAAAGTTTTTTATTGACAAGAGATGGTTACAATAGC
AAGCATTTTTTTAATGTGCCTCAGATTTCCACTAGTCATTTATTTAATAGAAATACCTATAACGAAGTTTGCAAACACAG
AGCTATAAAGGGTAAAAATATAAAAATTGTTCCGGTATCTGGAGACGTTGTTCTTCTTCATAACACTTCTTCTTTACACC
AAATCATTTCTTCTGATTGCCAGATGAAAGATAATCCCATGGTGGCTCTTGGCCGATTATATGCACAGGCTTATCATTTT
CTTATACAGGGTGAGTCATATATTGATACGTATAAAAAGTTAAAAAGAATGTTTGGAGATTTTGTTAATGAAGACACCTA
TATGGCCTTTATCTGTGACTTAGAGAAAATGGGGTTTTTGAAAAGAAATCTTTTATCTCGTCTTGATCAGGGCAGTCTTG
CTGGATTAATGATTATGAAAAGGGAATGGGATCTTGATATATCCCGGATTCAAAAATATTTTACTTATACAGAACTTCCA
TTATATACGCTTCTTGAGTTGAACTACGAGTGCAATCTTACTTGTGAAGTTTGCTATACAAAAAATCTTTCTAAAAATGT
GAATGCTTTATCTGATGAGCTATTTCTGTCAGAAGTTTTACAGCCTATTATTGATTCCGGTGTGAGTTATGTGACTATTT
TAGGTGGAGAACCACTGCTTAAAAAAGATTTATTATATGAGGTTGTATGCCGGTTACGCAAAAACAATATTTATGTAAAA
ATTATAACCAATGGCACCTTGATTATAAGCAAAGATCATGCTTTTGAATTAGTTGAGGCAGGTGTAAATAAAATTGAAAT
CAGTTTCGATGGACTTTCTGTTAATAAAGATAATGCTATACGAGTTATAAAAAAAGGATTTCTCAATATGAATGTTCATC
TTGTGGCTAAAAAAGCTATTGCATACTTAAAACAAGCTGGTATACCACAAGTTGGCGTATCTGTAACAGTTAATACTTTT
AATTATGATGAGATATTGAATGAAATGATTCCATTTGTAAGAGAGACAAAAGTCAATAAAATATATATTTCGATTTACTA
CTCAGATAAGTTTGATGAAAGCCACTTGGAAATTGATACGGATCAGAAAAAGGTATTATTGGATAGATGCAGTGAGTGGA
ACAATACTCTGTCTTCAGAGGTTTATGATTTTGAAGCAGTTATTTTAGGCTCTGATACCTCATGGCGTTGCACGTGTGGG
CGTTCAAGCGTTGTAGTTAATCCCTTTGGGGTCATGCGAGCCTGTCCTTTTTCAAGCAATAATGGAGACTGTTTGGATTC
TTCATATCCTGGAAGTTTTAAGGATATATGGTCTAACTCTGATTTATTTTGGACAATAAGGAGATTGCCAAAAAATGAAT
GTTCAACTAGACTATTTAGGGATACAGGTGTTTATTTGAAAGATTGA

Upstream 100 bases:

>100_bases
TTCCTGAAAAACTCATATGTAACCCAAAGTTTTTAGAGATCAGGAAGCAAATCTTGTTTTTTATATACTATATCAAAGGA
TTATGATGAATGAACAATAA

Downstream 100 bases:

>100_bases
GAAAATTCTTTTTTCAAATCAATAATAGTTATTGTTATGAATGGGGAAATGATAAGAGAGCCTAAAGGTGAAGTTATTGT
GATATTCGTACACGGATTGC

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 548; Mature: 548

Protein sequence:

>548_residues
MIMKSKKFSKKIYDYSAYKYLQKHPGYVAAKCSKGGRAEVFCLETGERTEIEPPAANMYLKRESISRQESFLLTRDGYNS
KHFFNVPQISTSHLFNRNTYNEVCKHRAIKGKNIKIVPVSGDVVLLHNTSSLHQIISSDCQMKDNPMVALGRLYAQAYHF
LIQGESYIDTYKKLKRMFGDFVNEDTYMAFICDLEKMGFLKRNLLSRLDQGSLAGLMIMKREWDLDISRIQKYFTYTELP
LYTLLELNYECNLTCEVCYTKNLSKNVNALSDELFLSEVLQPIIDSGVSYVTILGGEPLLKKDLLYEVVCRLRKNNIYVK
IITNGTLIISKDHAFELVEAGVNKIEISFDGLSVNKDNAIRVIKKGFLNMNVHLVAKKAIAYLKQAGIPQVGVSVTVNTF
NYDEILNEMIPFVRETKVNKIYISIYYSDKFDESHLEIDTDQKKVLLDRCSEWNNTLSSEVYDFEAVILGSDTSWRCTCG
RSSVVVNPFGVMRACPFSSNNGDCLDSSYPGSFKDIWSNSDLFWTIRRLPKNECSTRLFRDTGVYLKD

Sequences:

>Translated_548_residues
MIMKSKKFSKKIYDYSAYKYLQKHPGYVAAKCSKGGRAEVFCLETGERTEIEPPAANMYLKRESISRQESFLLTRDGYNS
KHFFNVPQISTSHLFNRNTYNEVCKHRAIKGKNIKIVPVSGDVVLLHNTSSLHQIISSDCQMKDNPMVALGRLYAQAYHF
LIQGESYIDTYKKLKRMFGDFVNEDTYMAFICDLEKMGFLKRNLLSRLDQGSLAGLMIMKREWDLDISRIQKYFTYTELP
LYTLLELNYECNLTCEVCYTKNLSKNVNALSDELFLSEVLQPIIDSGVSYVTILGGEPLLKKDLLYEVVCRLRKNNIYVK
IITNGTLIISKDHAFELVEAGVNKIEISFDGLSVNKDNAIRVIKKGFLNMNVHLVAKKAIAYLKQAGIPQVGVSVTVNTF
NYDEILNEMIPFVRETKVNKIYISIYYSDKFDESHLEIDTDQKKVLLDRCSEWNNTLSSEVYDFEAVILGSDTSWRCTCG
RSSVVVNPFGVMRACPFSSNNGDCLDSSYPGSFKDIWSNSDLFWTIRRLPKNECSTRLFRDTGVYLKD
>Mature_548_residues
MIMKSKKFSKKIYDYSAYKYLQKHPGYVAAKCSKGGRAEVFCLETGERTEIEPPAANMYLKRESISRQESFLLTRDGYNS
KHFFNVPQISTSHLFNRNTYNEVCKHRAIKGKNIKIVPVSGDVVLLHNTSSLHQIISSDCQMKDNPMVALGRLYAQAYHF
LIQGESYIDTYKKLKRMFGDFVNEDTYMAFICDLEKMGFLKRNLLSRLDQGSLAGLMIMKREWDLDISRIQKYFTYTELP
LYTLLELNYECNLTCEVCYTKNLSKNVNALSDELFLSEVLQPIIDSGVSYVTILGGEPLLKKDLLYEVVCRLRKNNIYVK
IITNGTLIISKDHAFELVEAGVNKIEISFDGLSVNKDNAIRVIKKGFLNMNVHLVAKKAIAYLKQAGIPQVGVSVTVNTF
NYDEILNEMIPFVRETKVNKIYISIYYSDKFDESHLEIDTDQKKVLLDRCSEWNNTLSSEVYDFEAVILGSDTSWRCTCG
RSSVVVNPFGVMRACPFSSNNGDCLDSSYPGSFKDIWSNSDLFWTIRRLPKNECSTRLFRDTGVYLKD

Specific function: Unknown

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 62788; Mature: 62788

Theoretical pI: Translated: 8.24; Mature: 8.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIMKSKKFSKKIYDYSAYKYLQKHPGYVAAKCSKGGRAEVFCLETGERTEIEPPAANMYL
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEE
KRESISRQESFLLTRDGYNSKHFFNVPQISTSHLFNRNTYNEVCKHRAIKGKNIKIVPVS
EHHHCCCCCCEEEEECCCCCCEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCEEEEEEC
GDVVLLHNTSSLHQIISSDCQMKDNPMVALGRLYAQAYHFLIQGESYIDTYKKLKRMFGD
CCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH
FVNEDTYMAFICDLEKMGFLKRNLLSRLDQGSLAGLMIMKREWDLDISRIQKYFTYTELP
HCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
LYTLLELNYECNLTCEVCYTKNLSKNVNALSDELFLSEVLQPIIDSGVSYVTILGGEPLL
EEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
KKDLLYEVVCRLRKNNIYVKIITNGTLIISKDHAFELVEAGVNKIEISFDGLSVNKDNAI
HHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCHHHHHHCCCCEEEEEECCEEECCCCHH
RVIKKGFLNMNVHLVAKKAIAYLKQAGIPQVGVSVTVNTFNYDEILNEMIPFVRETKVNK
HHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCE
IYISIYYSDKFDESHLEIDTDQKKVLLDRCSEWNNTLSSEVYDFEAVILGSDTSWRCTCG
EEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEECC
RSSVVVNPFGVMRACPFSSNNGDCLDSSYPGSFKDIWSNSDLFWTIRRLPKNECSTRLFR
CCCEEECCHHHHEECCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHH
DTGVYLKD
CCCCEECC
>Mature Secondary Structure
MIMKSKKFSKKIYDYSAYKYLQKHPGYVAAKCSKGGRAEVFCLETGERTEIEPPAANMYL
CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEECCCCCCCCCCCCCEEE
KRESISRQESFLLTRDGYNSKHFFNVPQISTSHLFNRNTYNEVCKHRAIKGKNIKIVPVS
EHHHCCCCCCEEEEECCCCCCEEEECCCCCHHHHCCCCCHHHHHHHHCCCCCCEEEEEEC
GDVVLLHNTSSLHQIISSDCQMKDNPMVALGRLYAQAYHFLIQGESYIDTYKKLKRMFGD
CCEEEEECCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHH
FVNEDTYMAFICDLEKMGFLKRNLLSRLDQGSLAGLMIMKREWDLDISRIQKYFTYTELP
HCCCCCEEEEEECHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHCCC
LYTLLELNYECNLTCEVCYTKNLSKNVNALSDELFLSEVLQPIIDSGVSYVTILGGEPLL
EEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHH
KKDLLYEVVCRLRKNNIYVKIITNGTLIISKDHAFELVEAGVNKIEISFDGLSVNKDNAI
HHHHHHHHHHHHHCCCEEEEEEECCEEEEECCCHHHHHHCCCCEEEEEECCEEECCCCHH
RVIKKGFLNMNVHLVAKKAIAYLKQAGIPQVGVSVTVNTFNYDEILNEMIPFVRETKVNK
HHHHHCCCCCEEEEHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCE
IYISIYYSDKFDESHLEIDTDQKKVLLDRCSEWNNTLSSEVYDFEAVILGSDTSWRCTCG
EEEEEEECCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEECCCCEEEECC
RSSVVVNPFGVMRACPFSSNNGDCLDSSYPGSFKDIWSNSDLFWTIRRLPKNECSTRLFR
CCCEEECCHHHHEECCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEECCCCCHHHHHHHH
DTGVYLKD
CCCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA