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The map label for this gene is trbI [H]

Identifier: 194334516

GI number: 194334516

Start: 1869683

End: 1870969

Strand: Reverse

Name: trbI [H]

Synonym: Paes_1711

Alternate gene names: 194334516

Gene position: 1870969-1869683 (Counterclockwise)

Preceding gene: 194334517

Following gene: 194334515

Centisome position: 74.45

GC content: 55.63

Gene sequence:

>1287_bases
ATGAGAAAAAAATCGGTTGTATCGGATCATTCGGGAGGGTATGATCCTCACGCGTCAACGGTGAACCCGGACGATCCACG
CCTGAAAGTGGCAAGGAGGAAAGGGCGTTCTATACGTAAGGGGCCTGTTGCCGGGGTTGTGGGGGTGGTTGTCGGTTTGT
TGATGCTCGCGGTGTCACTTGCTTTGCTGCCTCGTGAGAAGGCGCATCGGGAGACGGAGAGGAGGGCGCCTGGAGCAGCA
GAGCGGTTCGCAATACCTGATATGATCCGCAATGCGCCGGATAATGACGATCCTGTCCTTGTAGAGGGGCCTGTTGATGA
ACTGTTTGCAGGGGAGCTTTCGTCATCTGAAGAGGAGTCGTTTACTGAGGATTCGCTTCCTGTGAGCGGGAGATATGTGG
CTTCTTCCGGCATTGACTCTGGCGCGGATCAGGACCAGGATGCGTATGACCGGGCTTTGGAAGCAAGTCCGTTTTTTCAG
GGTGCCGGTGAAATGAGTCCGATGTCGGGCATGGTTGCTCAGGGAAGAGGTGGGGATGGTTTATCGGGTGGCTTGTCTGA
CCTTCGTGATCTTATGGGAGCGACACAAGTCCCGCAGGGCTTGTTTGGCGAAGAGGACCCGAACAGGCAGGGGCATAAAG
ATGATTTCATGGCTGGTGAGGGTGGCGCTCGTCATGGGGTTGCGGCCGGGGATGTGGTCTACCCTTCGAGTCCTTTCGAG
ATCAAGGCGGGATCGATTATTCCGGTGAGCCTGGTGACCGGTATCGATTCCGATCTTCCGGGGGAGATTATCGGCCAGGT
GCGTGAGCATGTGTATGATAGCGTGACGGGCAGATATCTTCTTATTCCTCAGGGATCGAGATTGCTGGCCCGTTATGACA
GTATGGTTTCCTATGGGCAGCGTCGGGCGTTGGTGTGCTGGAACCGGCTGATCCGTCCGGATGGTTCGTCGATTGATCTT
GGCTGTGCTCCGGGGATCGGGCTTGACGGATATGCGGGATTCGGAGATCGGGTTGATAATCATTTTGACCGCCTGATCGG
AGGGGTGCTGCTTTCATCAGTGCTTTCGGTTGGGACGACGATGTCTCAAGGGGAGTGGGATGGTCATGATGACAGGACTG
CAGGGCAGTTGTTTGCAGCGAATGCAGGAGAGGAGATCAATCGTGCGGGCCAGCAGATTACCCGGAAAAATCTTGGTATC
CAACCGACGATCAAAGTGAGACCGGGCTATTCTGTCAATGTGCTGGTGAACAGGGATTTGACGCTGGGGCCGGTGGGTGA
ATGGTGA

Upstream 100 bases:

>100_bases
TTGAGGAGGCGGAACTGCGCATTGGCAGGAAACGCCAGAATGTGGTCAGGATCAGTCGCTTGTAGGAGTTGATGTTTAAC
GGGTAGTTCTATTTGTAATC

Downstream 100 bases:

>100_bases
ATGGTGGGACGTTGGGTATTACGTGTACTTGGGGTGCCGCAGGCGCTACAGGCGTAACGTAGTGTTTCTTCTTATGGCTT
TTTCTTGCTGAGAGATTTTT

Product: conjugation TrbI family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MRKKSVVSDHSGGYDPHASTVNPDDPRLKVARRKGRSIRKGPVAGVVGVVVGLLMLAVSLALLPREKAHRETERRAPGAA
ERFAIPDMIRNAPDNDDPVLVEGPVDELFAGELSSSEEESFTEDSLPVSGRYVASSGIDSGADQDQDAYDRALEASPFFQ
GAGEMSPMSGMVAQGRGGDGLSGGLSDLRDLMGATQVPQGLFGEEDPNRQGHKDDFMAGEGGARHGVAAGDVVYPSSPFE
IKAGSIIPVSLVTGIDSDLPGEIIGQVREHVYDSVTGRYLLIPQGSRLLARYDSMVSYGQRRALVCWNRLIRPDGSSIDL
GCAPGIGLDGYAGFGDRVDNHFDRLIGGVLLSSVLSVGTTMSQGEWDGHDDRTAGQLFAANAGEEINRAGQQITRKNLGI
QPTIKVRPGYSVNVLVNRDLTLGPVGEW

Sequences:

>Translated_428_residues
MRKKSVVSDHSGGYDPHASTVNPDDPRLKVARRKGRSIRKGPVAGVVGVVVGLLMLAVSLALLPREKAHRETERRAPGAA
ERFAIPDMIRNAPDNDDPVLVEGPVDELFAGELSSSEEESFTEDSLPVSGRYVASSGIDSGADQDQDAYDRALEASPFFQ
GAGEMSPMSGMVAQGRGGDGLSGGLSDLRDLMGATQVPQGLFGEEDPNRQGHKDDFMAGEGGARHGVAAGDVVYPSSPFE
IKAGSIIPVSLVTGIDSDLPGEIIGQVREHVYDSVTGRYLLIPQGSRLLARYDSMVSYGQRRALVCWNRLIRPDGSSIDL
GCAPGIGLDGYAGFGDRVDNHFDRLIGGVLLSSVLSVGTTMSQGEWDGHDDRTAGQLFAANAGEEINRAGQQITRKNLGI
QPTIKVRPGYSVNVLVNRDLTLGPVGEW
>Mature_428_residues
MRKKSVVSDHSGGYDPHASTVNPDDPRLKVARRKGRSIRKGPVAGVVGVVVGLLMLAVSLALLPREKAHRETERRAPGAA
ERFAIPDMIRNAPDNDDPVLVEGPVDELFAGELSSSEEESFTEDSLPVSGRYVASSGIDSGADQDQDAYDRALEASPFFQ
GAGEMSPMSGMVAQGRGGDGLSGGLSDLRDLMGATQVPQGLFGEEDPNRQGHKDDFMAGEGGARHGVAAGDVVYPSSPFE
IKAGSIIPVSLVTGIDSDLPGEIIGQVREHVYDSVTGRYLLIPQGSRLLARYDSMVSYGQRRALVCWNRLIRPDGSSIDL
GCAPGIGLDGYAGFGDRVDNHFDRLIGGVLLSSVLSVGTTMSQGEWDGHDDRTAGQLFAANAGEEINRAGQQITRKNLGI
QPTIKVRPGYSVNVLVNRDLTLGPVGEW

Specific function: Unknown

COG id: COG2948

COG function: function code U; Type IV secretory pathway, VirB10 components

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbI/virB10 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005498 [H]

Pfam domain/function: PF03743 TrbI [H]

EC number: NA

Molecular weight: Translated: 45505; Mature: 45505

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKKSVVSDHSGGYDPHASTVNPDDPRLKVARRKGRSIRKGPVAGVVGVVVGLLMLAVSL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
ALLPREKAHRETERRAPGAAERFAIPDMIRNAPDNDDPVLVEGPVDELFAGELSSSEEES
HHHCCHHHHHHHHHCCCCCHHHHCCHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCHHHH
FTEDSLPVSGRYVASSGIDSGADQDQDAYDRALEASPFFQGAGEMSPMSGMVAQGRGGDG
CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCC
LSGGLSDLRDLMGATQVPQGLFGEEDPNRQGHKDDFMAGEGGARHGVAAGDVVYPSSPFE
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE
IKAGSIIPVSLVTGIDSDLPGEIIGQVREHVYDSVTGRYLLIPQGSRLLARYDSMVSYGQ
ECCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC
RRALVCWNRLIRPDGSSIDLGCAPGIGLDGYAGFGDRVDNHFDRLIGGVLLSSVLSVGTT
CHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
MSQGEWDGHDDRTAGQLFAANAGEEINRAGQQITRKNLGIQPTIKVRPGYSVNVLVNRDL
CCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCC
TLGPVGEW
CCCCCCCC
>Mature Secondary Structure
MRKKSVVSDHSGGYDPHASTVNPDDPRLKVARRKGRSIRKGPVAGVVGVVVGLLMLAVSL
CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
ALLPREKAHRETERRAPGAAERFAIPDMIRNAPDNDDPVLVEGPVDELFAGELSSSEEES
HHHCCHHHHHHHHHCCCCCHHHHCCHHHHHCCCCCCCCEEEECCHHHHHHCCCCCCHHHH
FTEDSLPVSGRYVASSGIDSGADQDQDAYDRALEASPFFQGAGEMSPMSGMVAQGRGGDG
CCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHCCCCCCCC
LSGGLSDLRDLMGATQVPQGLFGEEDPNRQGHKDDFMAGEGGARHGVAAGDVVYPSSPFE
CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCE
IKAGSIIPVSLVTGIDSDLPGEIIGQVREHVYDSVTGRYLLIPQGSRLLARYDSMVSYGQ
ECCCCEEEEHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCC
RRALVCWNRLIRPDGSSIDLGCAPGIGLDGYAGFGDRVDNHFDRLIGGVLLSSVLSVGTT
CHHHHHHHHHHCCCCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
MSQGEWDGHDDRTAGQLFAANAGEEINRAGQQITRKNLGIQPTIKVRPGYSVNVLVNRDL
CCCCCCCCCCCCCHHHEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCCEEEEEEECCC
TLGPVGEW
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]