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The map label for this gene is 194334312

Identifier: 194334312

GI number: 194334312

Start: 1646178

End: 1646603

Strand: Reverse

Name: 194334312

Synonym: Paes_1505

Alternate gene names: NA

Gene position: 1646603-1646178 (Counterclockwise)

Preceding gene: 194334313

Following gene: 194334311

Centisome position: 65.53

GC content: 47.89

Gene sequence:

>426_bases
ATGTCGCTTGAACTCTATAATACCACGCGTCGGGATATCCCTGAACAGAAACTGATGCAGGTGATTGAGGGGGTTTTGGG
AGCCGAAGGATTGGTGATTGAGGATCTCACGGCAGTCTATTGTGGCAACAGGCTGAGCCGACGCATCAACTGCGAGTTTC
TTCAGCACGATTACCCTACCGATACGATCACCTTCCGTTACAACGATGGAGAGGCAGTTGAGGGCGAGTTGTATATCTCA
CTCGATATTGTTGCAGAAAATGCACAACGGTTCAACGTCTCTTTTACTGATGAACTGTTTCGTGTAACCATTCATTCCGC
ATTGCATCTGGCCGGCTTTGAAGATACGAGCGTTGAAGAGCGGGCTTCCATGAAGGATAAGGAGGACCACTATCTCAATT
GTTTTTGCCAGGAAGACTCTTTGTGA

Upstream 100 bases:

>100_bases
GGCTATGAGGATGAGGATGTTATTCTTACCTATCGCGCGCATACCAGAAATCTTAAACATATCGACGCCAGAATACGGGC
GTTTGAGAACTCTGAGAGTC

Downstream 100 bases:

>100_bases
GGACCATTCATGGATTGAGGGTTGACGGTGAATGTTTTTTTTTCGATACTATAAACTCTTGGAACTGATAGGTTTATCTG
CTTCATTTCCTTTTGTGGAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MSLELYNTTRRDIPEQKLMQVIEGVLGAEGLVIEDLTAVYCGNRLSRRINCEFLQHDYPTDTITFRYNDGEAVEGELYIS
LDIVAENAQRFNVSFTDELFRVTIHSALHLAGFEDTSVEERASMKDKEDHYLNCFCQEDSL

Sequences:

>Translated_141_residues
MSLELYNTTRRDIPEQKLMQVIEGVLGAEGLVIEDLTAVYCGNRLSRRINCEFLQHDYPTDTITFRYNDGEAVEGELYIS
LDIVAENAQRFNVSFTDELFRVTIHSALHLAGFEDTSVEERASMKDKEDHYLNCFCQEDSL
>Mature_140_residues
SLELYNTTRRDIPEQKLMQVIEGVLGAEGLVIEDLTAVYCGNRLSRRINCEFLQHDYPTDTITFRYNDGEAVEGELYISL
DIVAENAQRFNVSFTDELFRVTIHSALHLAGFEDTSVEERASMKDKEDHYLNCFCQEDSL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_PROA2 (B4S8Y8)

Other databases:

- EMBL:   CP001108
- RefSeq:   YP_002016172.1
- GeneID:   6458799
- GenomeReviews:   CP001108_GR
- KEGG:   paa:Paes_1505
- HOGENOM:   HBG734136
- OMA:   VIIHGIL
- ProtClustDB:   CLSK637735
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16207; Mature: 16076

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLELYNTTRRDIPEQKLMQVIEGVLGAEGLVIEDLTAVYCGNRLSRRINCEFLQHDYPT
CCEEECCCHHHCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHCHHHCCCCCEEEECCCCCC
DTITFRYNDGEAVEGELYISLDIVAENAQRFNVSFTDELFRVTIHSALHLAGFEDTSVEE
CEEEEEECCCCEECCEEEEEEEEEECCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHH
RASMKDKEDHYLNCFCQEDSL
HHCCCCCCCCEEEEEEECCCC
>Mature Secondary Structure 
SLELYNTTRRDIPEQKLMQVIEGVLGAEGLVIEDLTAVYCGNRLSRRINCEFLQHDYPT
CEEECCCHHHCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHCHHHCCCCCEEEECCCCCC
DTITFRYNDGEAVEGELYISLDIVAENAQRFNVSFTDELFRVTIHSALHLAGFEDTSVEE
CEEEEEECCCCEECCEEEEEEEEEECCCEEECCCHHHHHHHHHHHHHHHCCCCCCCCHHH
RASMKDKEDHYLNCFCQEDSL
HHCCCCCCCCEEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA