| Definition | Prosthecochloris aestuarii DSM 271 chromosome, complete genome. |
|---|---|
| Accession | NC_011059 |
| Length | 2,512,923 |
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The map label for this gene is ygcB [H]
Identifier: 194334227
GI number: 194334227
Start: 1544037
End: 1546619
Strand: Reverse
Name: ygcB [H]
Synonym: Paes_1419
Alternate gene names: 194334227
Gene position: 1546619-1544037 (Counterclockwise)
Preceding gene: 194334228
Following gene: 194334226
Centisome position: 61.55
GC content: 45.37
Gene sequence:
>2583_bases ATGCGACTTCCGAGAGCTAAACAGAATGACGAGGCAGCACGACAACCCAATAAGTCATTGCCGATTGAAGCATGTCTTGC AAAAACGCGCGTATCGGAAAACAAAAAGTCGGTGAGCGGCAGAAATGTATTGGATCATTGCAGCATCGTGGGTGAAGTTG CAAGGGAATTACTTTCTCGAATGCCAGTTTTTTTACGGTCAGCTCTTTTTCCCGACGGCACGGAACTCGTTGCGGCTATT CATGATATCGGTAAAGTTAGCCCTTCATTCCAGGAGAAAATTTATCGCGGAACAGATGGCTATATATGGAATACACTTGA TGGACTTTCCTTTAGTAATCCAGAGCATGAGAAAAACTGGGGTGGCCATGCAGGCGTTAGCATGGCCGCTGCACGAGCTC GGAGGATTGGAAAATACATTCCCGAAATTATCGGTCAGCACCATGGTTATTCACCTGAACTGAACGGACTTGTTGCTGAA GATGAGGTTTTTGGTGGAAACGCATGGCAGAAAATGCGTGAAGAGCTTCTCTGTATCCTCAAGGATTCGTTGAAAAAAGA ATTTCCAGCAATCGAAAATGCTCTGCAGGCAAAAGCGATCGCTGGTCTTACCACTGTTGCCGACTGGATAGGATCAGGCT CATTCTTTGATGATCCTGATGAGCAATGGCTGCCCCTTATAAAGCATGCCGTTGATTCCGCAGGTTTTGTTCAGCCAGAA ATCATCAAAGGTCTCGGATTTAGTGAAATATTCTCTTTTCGACCACGAGAGATTCAGCAGTTACTTATTGAACAGGCAAC TCAACCGGGCGTCTATATTCTTGAAGCTCCCATGGGTATCGGAAAAACTGAAGCCGCGCTTTATGCTGCATATTCCATAA TAGCCGCAGGTGGTGCTACTGGGTTATACTTTGCGCTTCCGACACAACTCACTTCCAACAGAATTCATGACCGAGTCAAT GATTTCCTGAAAAAAATATTGGCTCCTGATTGTATTCATCGACAAGCTCTTTTACTGCATAGCAACGCTTGGCTGAAAGA GATTGAGATGGGCGCGGATGGTGGACCGGGAGGGAACTGGTTCAATTCCGGGAAACGAGGTATTCTTGCTCCATTTGCAG TTGGCACAATTGACCAGGCTCTCATGGCTGTGATGAATGTGAAGCATGGCTTTGTTAGGACATTTGGCTTGGCAGGGAAA GTTGTCATACTCGATGAGGTACACTCCTACGATGCCTATACCGGAACCATACTCGACAAACTGGTTGAGGCACTGCGCAA ACTCCAGTGTACAGTAATTATTTTGAGCGCTACCCTTACCAAAGAACGCCGGATGAATATTTTACAACAACCGGTACATG ATATTTCATATCCGCTCATCACAGCCAGCCAAAATCATGGCGAATCTGTAATCGAAACAACTGCCGTTGTTCCAGGAAAA ACCGTTGTATCCATTCAATCTTCTTCATATTTCGATTTAGCTATCGAAGAGGCTTTGACAAGGGCTGAAGGTGGTCAGCA AGTGCTCTGGATTGAAAATACGGTTGCTGAAGCACAAAACTCTTTCAGCATTCTTGCTGCTCGATCTGCCGGAATGGAAA TTGAATGTGGTTTGCTTCACTCTCGTTTTATAAAAGCCGATCGTGAACGCAACGAGGAGTATTGGGTTACTCGCTATGGA AAAGGATGCGATGAACTAAGGCGACAAAGTGGTCGAATACTTGTTGGTACCCAGGTGTTGGAACAGTCTTTGGATATCGA TGCAGATTTTCTTGTAACAAAAATATGCCCGACTGATATGCTGCTGCAAAGGATTGGTCGACTATGGCGACATGGTGATA CGTTTCGTCCGGTCGGTGCCGTCTGTGAAGTGTTGATACTGAAGCCTGAGTTCCATAGTGCACTTTTAAATCCTGAAAAA GAATTCGGGCCTACAGCAAATGTCTATAGCCCTTATGTGCTTTTGCGAACCCTTGTTGTCTGGAATGACCTGGCCGATAT TGTTCTTCCGGAACAGATACGAAGCTTGATCGAGGCGACCTATATGGAAATTGAAGAGCATCCTATGATGCTCAAGTATA AAGCGAAGCTCCAGCAGGAAAAAGCGAAGCTTGAACTGCTTGCCCTGGGTGGCGTTTCGGAAGGCACAAAAACTTTGCCG GAAAGCAAGGCAAGCACTCGATATAGCGAACAGGAAAGTGTTGAGGTATTACTGTTACGTTCTTTTCTCTTTGACCGTAA TCAGAATGTGACAAATGTCAAACTACTTGACGGCAGTGATCTTTTTCTGCCATTGGTATGCTCGAAGAAGAGTAAAAAAG AACAACGTTCACTTGCAGCATCTCTTGCGCAATACACCCTGCATGTTGCCGACTATCTCGCTCCGGAAGTAATTTCGGTT AAAAACCTCGACTGGTTGAAAAATTATTTCTATCTCGGAGACCGTGATCATGACGAAAGCCTCCTTCGGGTAGCTATTGT AGGGCAAGACGAGGAACTCAGATCCCTGAGTGGTCAGAATGCATCGTCTTCATACAGGATCAGTTACAGTTCAAGGCAGG GATATCGGGCCATAAAAATATAA
Upstream 100 bases:
>100_bases GCATCAAACTACACCGCGCATCTGGCGATGCGTTGCTGACCGCCATGATATGGCAGGTAATAGAGAATACACAGCTATAA CGATTTATTCTCCTTTTTTT
Downstream 100 bases:
>100_bases ACAGGTAAAACAACTGAGATATGATCCCTGAAAATTGTTTCAATTTGATTGACGAGCCATGGATACCCGTCATTGACAAA GGACGAATAAGCTTGCGACA
Product: CRISPR-associated helicase Cas3
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 860; Mature: 860
Protein sequence:
>860_residues MRLPRAKQNDEAARQPNKSLPIEACLAKTRVSENKKSVSGRNVLDHCSIVGEVARELLSRMPVFLRSALFPDGTELVAAI HDIGKVSPSFQEKIYRGTDGYIWNTLDGLSFSNPEHEKNWGGHAGVSMAAARARRIGKYIPEIIGQHHGYSPELNGLVAE DEVFGGNAWQKMREELLCILKDSLKKEFPAIENALQAKAIAGLTTVADWIGSGSFFDDPDEQWLPLIKHAVDSAGFVQPE IIKGLGFSEIFSFRPREIQQLLIEQATQPGVYILEAPMGIGKTEAALYAAYSIIAAGGATGLYFALPTQLTSNRIHDRVN DFLKKILAPDCIHRQALLLHSNAWLKEIEMGADGGPGGNWFNSGKRGILAPFAVGTIDQALMAVMNVKHGFVRTFGLAGK VVILDEVHSYDAYTGTILDKLVEALRKLQCTVIILSATLTKERRMNILQQPVHDISYPLITASQNHGESVIETTAVVPGK TVVSIQSSSYFDLAIEEALTRAEGGQQVLWIENTVAEAQNSFSILAARSAGMEIECGLLHSRFIKADRERNEEYWVTRYG KGCDELRRQSGRILVGTQVLEQSLDIDADFLVTKICPTDMLLQRIGRLWRHGDTFRPVGAVCEVLILKPEFHSALLNPEK EFGPTANVYSPYVLLRTLVVWNDLADIVLPEQIRSLIEATYMEIEEHPMMLKYKAKLQQEKAKLELLALGGVSEGTKTLP ESKASTRYSEQESVEVLLLRSFLFDRNQNVTNVKLLDGSDLFLPLVCSKKSKKEQRSLAASLAQYTLHVADYLAPEVISV KNLDWLKNYFYLGDRDHDESLLRVAIVGQDEELRSLSGQNASSSYRISYSSRQGYRAIKI
Sequences:
>Translated_860_residues MRLPRAKQNDEAARQPNKSLPIEACLAKTRVSENKKSVSGRNVLDHCSIVGEVARELLSRMPVFLRSALFPDGTELVAAI HDIGKVSPSFQEKIYRGTDGYIWNTLDGLSFSNPEHEKNWGGHAGVSMAAARARRIGKYIPEIIGQHHGYSPELNGLVAE DEVFGGNAWQKMREELLCILKDSLKKEFPAIENALQAKAIAGLTTVADWIGSGSFFDDPDEQWLPLIKHAVDSAGFVQPE IIKGLGFSEIFSFRPREIQQLLIEQATQPGVYILEAPMGIGKTEAALYAAYSIIAAGGATGLYFALPTQLTSNRIHDRVN DFLKKILAPDCIHRQALLLHSNAWLKEIEMGADGGPGGNWFNSGKRGILAPFAVGTIDQALMAVMNVKHGFVRTFGLAGK VVILDEVHSYDAYTGTILDKLVEALRKLQCTVIILSATLTKERRMNILQQPVHDISYPLITASQNHGESVIETTAVVPGK TVVSIQSSSYFDLAIEEALTRAEGGQQVLWIENTVAEAQNSFSILAARSAGMEIECGLLHSRFIKADRERNEEYWVTRYG KGCDELRRQSGRILVGTQVLEQSLDIDADFLVTKICPTDMLLQRIGRLWRHGDTFRPVGAVCEVLILKPEFHSALLNPEK EFGPTANVYSPYVLLRTLVVWNDLADIVLPEQIRSLIEATYMEIEEHPMMLKYKAKLQQEKAKLELLALGGVSEGTKTLP ESKASTRYSEQESVEVLLLRSFLFDRNQNVTNVKLLDGSDLFLPLVCSKKSKKEQRSLAASLAQYTLHVADYLAPEVISV KNLDWLKNYFYLGDRDHDESLLRVAIVGQDEELRSLSGQNASSSYRISYSSRQGYRAIKI >Mature_860_residues MRLPRAKQNDEAARQPNKSLPIEACLAKTRVSENKKSVSGRNVLDHCSIVGEVARELLSRMPVFLRSALFPDGTELVAAI HDIGKVSPSFQEKIYRGTDGYIWNTLDGLSFSNPEHEKNWGGHAGVSMAAARARRIGKYIPEIIGQHHGYSPELNGLVAE DEVFGGNAWQKMREELLCILKDSLKKEFPAIENALQAKAIAGLTTVADWIGSGSFFDDPDEQWLPLIKHAVDSAGFVQPE IIKGLGFSEIFSFRPREIQQLLIEQATQPGVYILEAPMGIGKTEAALYAAYSIIAAGGATGLYFALPTQLTSNRIHDRVN DFLKKILAPDCIHRQALLLHSNAWLKEIEMGADGGPGGNWFNSGKRGILAPFAVGTIDQALMAVMNVKHGFVRTFGLAGK VVILDEVHSYDAYTGTILDKLVEALRKLQCTVIILSATLTKERRMNILQQPVHDISYPLITASQNHGESVIETTAVVPGK TVVSIQSSSYFDLAIEEALTRAEGGQQVLWIENTVAEAQNSFSILAARSAGMEIECGLLHSRFIKADRERNEEYWVTRYG KGCDELRRQSGRILVGTQVLEQSLDIDADFLVTKICPTDMLLQRIGRLWRHGDTFRPVGAVCEVLILKPEFHSALLNPEK EFGPTANVYSPYVLLRTLVVWNDLADIVLPEQIRSLIEATYMEIEEHPMMLKYKAKLQQEKAKLELLALGGVSEGTKTLP ESKASTRYSEQESVEVLLLRSFLFDRNQNVTNVKLLDGSDLFLPLVCSKKSKKEQRSLAASLAQYTLHVADYLAPEVISV KNLDWLKNYFYLGDRDHDESLLRVAIVGQDEELRSLSGQNASSSYRISYSSRQGYRAIKI
Specific function: Unknown
COG id: COG1203
COG function: function code R; Predicted helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789119, Length=535, Percent_Identity=30.0934579439252, Blast_Score=201, Evalue=1e-52,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006483 - InterPro: IPR014001 - InterPro: IPR011545 - InterPro: IPR001650 - InterPro: IPR006474 - InterPro: IPR014021 [H]
Pfam domain/function: PF00270 DEAD [H]
EC number: NA
Molecular weight: Translated: 95557; Mature: 95557
Theoretical pI: Translated: 6.52; Mature: 6.52
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLPRAKQNDEAARQPNKSLPIEACLAKTRVSENKKSVSGRNVLDHCSIVGEVARELLSR CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHH MPVFLRSALFPDGTELVAAIHDIGKVSPSFQEKIYRGTDGYIWNTLDGLSFSNPEHEKNW CHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC GGHAGVSMAAARARRIGKYIPEIIGQHHGYSPELNGLVAEDEVFGGNAWQKMREELLCIL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHH KDSLKKEFPAIENALQAKAIAGLTTVADWIGSGSFFDDPDEQWLPLIKHAVDSAGFVQPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH IIKGLGFSEIFSFRPREIQQLLIEQATQPGVYILEAPMGIGKTEAALYAAYSIIAAGGAT HHHCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC GLYFALPTQLTSNRIHDRVNDFLKKILAPDCIHRQALLLHSNAWLKEIEMGADGGPGGNW CEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC FNSGKRGILAPFAVGTIDQALMAVMNVKHGFVRTFGLAGKVVILDEVHSYDAYTGTILDK CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH LVEALRKLQCTVIILSATLTKERRMNILQQPVHDISYPLITASQNHGESVIETTAVVPGK HHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHEECCCC TVVSIQSSSYFDLAIEEALTRAEGGQQVLWIENTVAEAQNSFSILAARSAGMEIECGLLH EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCEEEEECCCCCEEEHHHHH SRFIKADRERNEEYWVTRYGKGCDELRRQSGRILVGTQVLEQSLDIDADFLVTKICPTDM HHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCEEEEHHHHHHHCCCCHHHHHHHCCCHHH LLQRIGRLWRHGDTFRPVGAVCEVLILKPEFHSALLNPEKEFGPTANVYSPYVLLRTLVV HHHHHHHHHHCCCCCCCHHHHHHHHEECCHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHH WNDLADIVLPEQIRSLIEATYMEIEEHPMMLKYKAKLQQEKAKLELLALGGVSEGTKTLP HHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCC ESKASTRYSEQESVEVLLLRSFLFDRNQNVTNVKLLDGSDLFLPLVCSKKSKKEQRSLAA CCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHH SLAQYTLHVADYLAPEVISVKNLDWLKNYFYLGDRDHDESLLRVAIVGQDEELRSLSGQN HHHHHHHHHHHHHCCHHHCCCCHHHHHHHEECCCCCCCCCEEEEEEECCCHHHHHHCCCC ASSSYRISYSSRQGYRAIKI CCCCEEEEECCCCCCEECCC >Mature Secondary Structure MRLPRAKQNDEAARQPNKSLPIEACLAKTRVSENKKSVSGRNVLDHCSIVGEVARELLSR CCCCCCCCCCHHHHCCCCCCCHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHHHHHHHHH MPVFLRSALFPDGTELVAAIHDIGKVSPSFQEKIYRGTDGYIWNTLDGLSFSNPEHEKNW CHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEECCCCCCCCCCCCCCCC GGHAGVSMAAARARRIGKYIPEIIGQHHGYSPELNGLVAEDEVFGGNAWQKMREELLCIL CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHH KDSLKKEFPAIENALQAKAIAGLTTVADWIGSGSFFDDPDEQWLPLIKHAVDSAGFVQPE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH IIKGLGFSEIFSFRPREIQQLLIEQATQPGVYILEAPMGIGKTEAALYAAYSIIAAGGAT HHHCCCHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCC GLYFALPTQLTSNRIHDRVNDFLKKILAPDCIHRQALLLHSNAWLKEIEMGADGGPGGNW CEEEEECHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCC FNSGKRGILAPFAVGTIDQALMAVMNVKHGFVRTFGLAGKVVILDEVHSYDAYTGTILDK CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH LVEALRKLQCTVIILSATLTKERRMNILQQPVHDISYPLITASQNHGESVIETTAVVPGK HHHHHHHHCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHEECCCC TVVSIQSSSYFDLAIEEALTRAEGGQQVLWIENTVAEAQNSFSILAARSAGMEIECGLLH EEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEHHHHHHCCCCEEEEECCCCCEEEHHHHH SRFIKADRERNEEYWVTRYGKGCDELRRQSGRILVGTQVLEQSLDIDADFLVTKICPTDM HHHHHHHHHCCCCEEEEECCCCHHHHHHCCCCEEEEHHHHHHHCCCCHHHHHHHCCCHHH LLQRIGRLWRHGDTFRPVGAVCEVLILKPEFHSALLNPEKEFGPTANVYSPYVLLRTLVV HHHHHHHHHHCCCCCCCHHHHHHHHEECCHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHH WNDLADIVLPEQIRSLIEATYMEIEEHPMMLKYKAKLQQEKAKLELLALGGVSEGTKTLP HHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHEEEEEECCCCCCCCCCC ESKASTRYSEQESVEVLLLRSFLFDRNQNVTNVKLLDGSDLFLPLVCSKKSKKEQRSLAA CCHHHCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHH SLAQYTLHVADYLAPEVISVKNLDWLKNYFYLGDRDHDESLLRVAIVGQDEELRSLSGQN HHHHHHHHHHHHHCCHHHCCCCHHHHHHHEECCCCCCCCCEEEEEEECCCHHHHHHCCCC ASSSYRISYSSRQGYRAIKI CCCCEEEEECCCCCCEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9278503; 2005873; 7984428 [H]