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The map label for this gene is ygbT [H]

Identifier: 194334221

GI number: 194334221

Start: 1538648

End: 1539523

Strand: Reverse

Name: ygbT [H]

Synonym: Paes_1413

Alternate gene names: 194334221

Gene position: 1539523-1538648 (Counterclockwise)

Preceding gene: 194334222

Following gene: 194334220

Centisome position: 61.26

GC content: 43.84

Gene sequence:

>876_bases
ATGAAAACTGAAAAGATAGTACCCGAGAGCAAGCCATCTCGGTTGCTGATAAAAATCACCCGAGACACCTTACCGCAGGT
GAAGGATAAATACCCGTTTCTCTATCTTGAGCGAGGGCGTCTGGAAATAGACGATAGCAGTATAAAATGGATAGATTGCG
ACTGTAACGTTGTCCGGTTACCTGTGGCGCAGCTCAATTGCTTGTTGCTTGGACCGGGGACTGCTGTTACACATGAAGCT
GTAAAAGTTATGGCAGCAGCAAATTGTGGTATATGCTGGGTCGGGGAAGATAGTCTGATTTTTTATGCCGCAGGACAGAC
GCCTACAAGTGATTCTCGGAACTTTCGACGGCAAATGGTGTTGTCTGCCGATCCTGAAAAATCTCTTAAAGTTGCTCAGC
GCATGTTTGCCCGCAGATTTCCTGATGCGAAACTTGAGACTAAGAGCCTTCAGCAAATGATGGGAATGGAAGGGTTGCGT
GTTCGTCAACTTTATGTACAAAAAGCTCAAGAATACAAGGTGGGCTGGAAGGGACGACAATTTACTCCTGGAAAGTTTGA
AATAGGGGATATAACTAATAGAATTCTGACATCATCAAATGCAGCTCTATATGGTATAATTTGTTCTGCTGTTCACAGTA
TGGGTTATTCTCCACACATGGGTTTTATACATACAGGTAGTCCGCTGCCATTCGTTTATGATTTGGCAGATTTATACAAA
GAGAATCTCTCGATTGATCTCGCCTTTCGATTGACGGCGTTGATGGCCGGAACTTATGATAGGCACAAAATTGCTACTGA
ATTTCGCAGGAGAGTTATTGAGATGGATCTTCTTGCTCGTATTGGGCCTGATATTGAAGAAATGCTTGGGAGGTAA

Upstream 100 bases:

>100_bases
GAACACGAAGGGGAAGCCATCGTCTTGAACGATGTGCCGATACAGTTTGGAGAGCAGAAGCTGTACCGGGAACGCAGAGT
AACCGTAATTTCATGTGCAA

Downstream 100 bases:

>100_bases
GAATGGTGATTGTTGTCGCTAATGATATTCCGCCTGCAGTAAGGGGGCGAATGAAACTCTGGTTTGTGGAGCCGCGAGCA
AATGTTTTTGTTTCTGGAAT

Product: CRISPR-associated protein Cas1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MKTEKIVPESKPSRLLIKITRDTLPQVKDKYPFLYLERGRLEIDDSSIKWIDCDCNVVRLPVAQLNCLLLGPGTAVTHEA
VKVMAAANCGICWVGEDSLIFYAAGQTPTSDSRNFRRQMVLSADPEKSLKVAQRMFARRFPDAKLETKSLQQMMGMEGLR
VRQLYVQKAQEYKVGWKGRQFTPGKFEIGDITNRILTSSNAALYGIICSAVHSMGYSPHMGFIHTGSPLPFVYDLADLYK
ENLSIDLAFRLTALMAGTYDRHKIATEFRRRVIEMDLLARIGPDIEEMLGR

Sequences:

>Translated_291_residues
MKTEKIVPESKPSRLLIKITRDTLPQVKDKYPFLYLERGRLEIDDSSIKWIDCDCNVVRLPVAQLNCLLLGPGTAVTHEA
VKVMAAANCGICWVGEDSLIFYAAGQTPTSDSRNFRRQMVLSADPEKSLKVAQRMFARRFPDAKLETKSLQQMMGMEGLR
VRQLYVQKAQEYKVGWKGRQFTPGKFEIGDITNRILTSSNAALYGIICSAVHSMGYSPHMGFIHTGSPLPFVYDLADLYK
ENLSIDLAFRLTALMAGTYDRHKIATEFRRRVIEMDLLARIGPDIEEMLGR
>Mature_291_residues
MKTEKIVPESKPSRLLIKITRDTLPQVKDKYPFLYLERGRLEIDDSSIKWIDCDCNVVRLPVAQLNCLLLGPGTAVTHEA
VKVMAAANCGICWVGEDSLIFYAAGQTPTSDSRNFRRQMVLSADPEKSLKVAQRMFARRFPDAKLETKSLQQMMGMEGLR
VRQLYVQKAQEYKVGWKGRQFTPGKFEIGDITNRILTSSNAALYGIICSAVHSMGYSPHMGFIHTGSPLPFVYDLADLYK
ENLSIDLAFRLTALMAGTYDRHKIATEFRRRVIEMDLLARIGPDIEEMLGR

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=263, Percent_Identity=34.6007604562738, Blast_Score=174, Evalue=4e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 32915; Mature: 32915

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTEKIVPESKPSRLLIKITRDTLPQVKDKYPFLYLERGRLEIDDSSIKWIDCDCNVVRL
CCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCEEEEECCEEEECCCCEEEEECCCCEEEE
PVAQLNCLLLGPGTAVTHEAVKVMAAANCGICWVGEDSLIFYAAGQTPTSDSRNFRRQMV
CHHHEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCHHHHHHHE
LSADPEKSLKVAQRMFARRFPDAKLETKSLQQMMGMEGLRVRQLYVQKAQEYKVGWKGRQ
ECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
FTPGKFEIGDITNRILTSSNAALYGIICSAVHSMGYSPHMGFIHTGSPLPFVYDLADLYK
CCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHH
ENLSIDLAFRLTALMAGTYDRHKIATEFRRRVIEMDLLARIGPDIEEMLGR
HCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
>Mature Secondary Structure
MKTEKIVPESKPSRLLIKITRDTLPQVKDKYPFLYLERGRLEIDDSSIKWIDCDCNVVRL
CCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCEEEEECCEEEECCCCEEEEECCCCEEEE
PVAQLNCLLLGPGTAVTHEAVKVMAAANCGICWVGEDSLIFYAAGQTPTSDSRNFRRQMV
CHHHEEEEEECCCCHHHHHHHHHHHHCCCCEEEECCCCEEEEECCCCCCCCCHHHHHHHE
LSADPEKSLKVAQRMFARRFPDAKLETKSLQQMMGMEGLRVRQLYVQKAQEYKVGWKGRQ
ECCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCC
FTPGKFEIGDITNRILTSSNAALYGIICSAVHSMGYSPHMGFIHTGSPLPFVYDLADLYK
CCCCCEEHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHHHHHHHHH
ENLSIDLAFRLTALMAGTYDRHKIATEFRRRVIEMDLLARIGPDIEEMLGR
HCCCEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]