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The map label for this gene is cbiD

Identifier: 194334098

GI number: 194334098

Start: 1403820

End: 1404929

Strand: Reverse

Name: cbiD

Synonym: Paes_1286

Alternate gene names: 194334098

Gene position: 1404929-1403820 (Counterclockwise)

Preceding gene: 194334099

Following gene: 194334093

Centisome position: 55.91

GC content: 60.63

Gene sequence:

>1110_bases
ATGACTGCGCAGAAGGGCGAACTGCGGCAGGGCTATACCACCGGTTCGTGTGCAACAGCGGCTGCCCGGGCGGCGCTGCA
CCTGCTGCTGGATGGTCAGATGCCCGAACGGGTATCCATCACCCTTCCGGATGGCGGCTCTGCAGAGTTCAGCCCTGAAG
CGGGACGTCGCGATGCAGCGGGGGCATCCTGCTGTGTGAGAAAAGATGCGGGGGACGACCCCGACGTGACGAACGGGCTT
TTGGTCTGCTGCAGGGTTGCACTGCTCGATGATGAGCCGGAAGGCCATATCGAGTTCTGCCGGGGGGAGGGGGTCGGGAT
GGTTACCCTGCCCGGTCTTGGCATCGATGTGGGAGGTCCGGCGATCAACCCCGTCCCGCGATCGATGATCCGGGAGGCGC
TCGGTGGTCTGCTCGATCGTTACGGTCTCCGTTGCGGGGTACAGGTGACGGTGTCCGTTCCCGGAGGTGAAGAGGTTGCC
CGTAAAACCCTGAACGCGCGCGTGGGAGTCAAAGGCGGCATTTCGATCATCGGTACCAGCGGACGGGTCATTCCCTACAG
CGAAGAAGCATATCTCGAAAGCATCGCCCGTACGATCAGGGTCGCCCGTCACAGCGGAAGCACGCACCTCGTGGCGTGCG
CAGGTGCGAGAAGCGAAAAGCTTCTCCGGAGGATGTATCCCGATCTTCCTGAAACGGCCTTTATTCACTATGGTAACAGG
GTCGGCAGCACCCTCGACATGATTCAGCATGACGGGGGTTTCCGCAACCTGACCGTCGGGGTGATGCTCGCCAAGGCCAC
CAAGCTCGCACAGGGTGAACTCGATCTCTCCAGCAGGACGGTCGGCCTCAATCCGCAGTTCATCGAGCATCTGGTACGCA
AGACCGGTTACGCAGAAGATGTAGCTTTGGAGGCGAAAGCCCTTGAACTGGTGCGTTCACTTGTCGATATTGTACCGTTC
AGCTCTTCGGAACCGTTGTACCGGGCACTGGCAGAGTCGTGCCGCAGGGTCTGTCGTAACCGGTTCCCTTCAGGAGGCCT
CGAATTCGTGCTCATGACCATGCAGGATGGCTGTATTCTCTGTGACGAGCACGGGTGCCGTGATGTGTGA

Upstream 100 bases:

>100_bases
CCATCGTGCTGGTCAGGCGTCCCTCCCTGCCGGCTGCGTTGCAGGTTGTCAGGAGCCTTCGCGAGCTTGGGGGATTGCTT
CAACAAGCATCTCTTCGGGC

Downstream 100 bases:

>100_bases
AGGGTTCGACGAGCGACTGCTTGTCTCCGTCGACCCTGTCGTTCGTCAACCGTCTCTCCGACCTCCTTTGTTCATGGGTT
CAGCAGTGCTTGAGCCTCTT

Product: cobalamin (vitamin B12) biosynthesis CbiD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 369; Mature: 368

Protein sequence:

>369_residues
MTAQKGELRQGYTTGSCATAAARAALHLLLDGQMPERVSITLPDGGSAEFSPEAGRRDAAGASCCVRKDAGDDPDVTNGL
LVCCRVALLDDEPEGHIEFCRGEGVGMVTLPGLGIDVGGPAINPVPRSMIREALGGLLDRYGLRCGVQVTVSVPGGEEVA
RKTLNARVGVKGGISIIGTSGRVIPYSEEAYLESIARTIRVARHSGSTHLVACAGARSEKLLRRMYPDLPETAFIHYGNR
VGSTLDMIQHDGGFRNLTVGVMLAKATKLAQGELDLSSRTVGLNPQFIEHLVRKTGYAEDVALEAKALELVRSLVDIVPF
SSSEPLYRALAESCRRVCRNRFPSGGLEFVLMTMQDGCILCDEHGCRDV

Sequences:

>Translated_369_residues
MTAQKGELRQGYTTGSCATAAARAALHLLLDGQMPERVSITLPDGGSAEFSPEAGRRDAAGASCCVRKDAGDDPDVTNGL
LVCCRVALLDDEPEGHIEFCRGEGVGMVTLPGLGIDVGGPAINPVPRSMIREALGGLLDRYGLRCGVQVTVSVPGGEEVA
RKTLNARVGVKGGISIIGTSGRVIPYSEEAYLESIARTIRVARHSGSTHLVACAGARSEKLLRRMYPDLPETAFIHYGNR
VGSTLDMIQHDGGFRNLTVGVMLAKATKLAQGELDLSSRTVGLNPQFIEHLVRKTGYAEDVALEAKALELVRSLVDIVPF
SSSEPLYRALAESCRRVCRNRFPSGGLEFVLMTMQDGCILCDEHGCRDV
>Mature_368_residues
TAQKGELRQGYTTGSCATAAARAALHLLLDGQMPERVSITLPDGGSAEFSPEAGRRDAAGASCCVRKDAGDDPDVTNGLL
VCCRVALLDDEPEGHIEFCRGEGVGMVTLPGLGIDVGGPAINPVPRSMIREALGGLLDRYGLRCGVQVTVSVPGGEEVAR
KTLNARVGVKGGISIIGTSGRVIPYSEEAYLESIARTIRVARHSGSTHLVACAGARSEKLLRRMYPDLPETAFIHYGNRV
GSTLDMIQHDGGFRNLTVGVMLAKATKLAQGELDLSSRTVGLNPQFIEHLVRKTGYAEDVALEAKALELVRSLVDIVPFS
SSEPLYRALAESCRRVCRNRFPSGGLEFVLMTMQDGCILCDEHGCRDV

Specific function: May catalyze the methylation of C-1 in cobalt-precorrin- 5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A

COG id: COG1903

COG function: function code H; Cobalamin biosynthesis protein CbiD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CbiD family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CBID_PROA2 (B4S8C4)

Other databases:

- EMBL:   CP001108
- RefSeq:   YP_002015958.1
- ProteinModelPortal:   B4S8C4
- SMR:   B4S8C4
- GeneID:   6458619
- GenomeReviews:   CP001108_GR
- KEGG:   paa:Paes_1286
- HOGENOM:   HBG705387
- OMA:   NTSAICA
- ProtClustDB:   CLSK2340669
- HAMAP:   MF_00787
- InterPro:   IPR002748
- PIRSF:   PIRSF026782

Pfam domain/function: PF01888 CbiD; SSF111342 Cbl_biosynth_CbiD

EC number: NA

Molecular weight: Translated: 39367; Mature: 39235

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS00063 ALDOKETO_REDUCTASE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAQKGELRQGYTTGSCATAAARAALHLLLDGQMPERVSITLPDGGSAEFSPEAGRRDAA
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
GASCCVRKDAGDDPDVTNGLLVCCRVALLDDEPEGHIEFCRGEGVGMVTLPGLGIDVGGP
CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCEECCCC
AINPVPRSMIREALGGLLDRYGLRCGVQVTVSVPGGEEVARKTLNARVGVKGGISIIGTS
CCCCCCHHHHHHHHHHHHHHHCCEECEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECC
GRVIPYSEEAYLESIARTIRVARHSGSTHLVACAGARSEKLLRRMYPDLPETAFIHYGNR
CCEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEEECCCH
VGSTLDMIQHDGGFRNLTVGVMLAKATKLAQGELDLSSRTVGLNPQFIEHLVRKTGYAED
HCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCHHH
VALEAKALELVRSLVDIVPFSSSEPLYRALAESCRRVCRNRFPSGGLEFVLMTMQDGCIL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEE
CDEHGCRDV
ECCCCCCCC
>Mature Secondary Structure 
TAQKGELRQGYTTGSCATAAARAALHLLLDGQMPERVSITLPDGGSAEFSPEAGRRDAA
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC
GASCCVRKDAGDDPDVTNGLLVCCRVALLDDEPEGHIEFCRGEGVGMVTLPGLGIDVGGP
CCCEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCEECCCC
AINPVPRSMIREALGGLLDRYGLRCGVQVTVSVPGGEEVARKTLNARVGVKGGISIIGTS
CCCCCCHHHHHHHHHHHHHHHCCEECEEEEEECCCCHHHHHHHHHHCCCCCCCEEEEECC
GRVIPYSEEAYLESIARTIRVARHSGSTHLVACAGARSEKLLRRMYPDLPETAFIHYGNR
CCEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHCCCCCCCEEEECCCH
VGSTLDMIQHDGGFRNLTVGVMLAKATKLAQGELDLSSRTVGLNPQFIEHLVRKTGYAED
HCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHCCCHHH
VALEAKALELVRSLVDIVPFSSSEPLYRALAESCRRVCRNRFPSGGLEFVLMTMQDGCIL
HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEE
CDEHGCRDV
ECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA