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The map label for this gene is ydeM [C]

Identifier: 194334092

GI number: 194334092

Start: 1395507

End: 1396547

Strand: Reverse

Name: ydeM [C]

Synonym: Paes_1280

Alternate gene names: 194334092

Gene position: 1396547-1395507 (Counterclockwise)

Preceding gene: 194334093

Following gene: 194334091

Centisome position: 55.57

GC content: 54.47

Gene sequence:

>1041_bases
ATGAGCCGACGGGAGATTTCCTATCTGATCCTTGTCGTGACCCGTTCCTGCAATCTTTCGTGTGTCTATTGTTATGAGAA
CGCGTGTCGGCACGACGGAGCGGCAATGAGTCTTCAGACAGCCGAGCAGGCGGTCGGACTTGTGGCTGCATCAGGTAAGC
CGTTTCACATTCAGTTGTCAGGCGGGGAGCCTTTGCTTGCGCCGGATACGATCTTTGCTGTTATGGAACTGATTCGTAAA
AAGGGGATTCCGGCTTTTGTATCGTTGCAGACCAACGGGGTCTTGCTTGACCGGGAGATGATCAGGTCGCTGAACGGTTA
CGGTGTCAGCATAGGGCTTAGTCTTGACGGTCCGCCTCGTCTTCAGGAGGAGCTCAGGGGGGGCAGTGCGGCAACCTACA
GGGCGTTGAGACTTCTGGAAGATGAGGGGGTTCCTTTCAGGGTGACGACCGTCGTTTCTGATTGCAATGTCACGAAGCTT
CAATTGCTTCCGATGAGTTTGCACGGCTTTTCCATGGCATCAGGTATTGCGCTGGATCTGCTTGTCAAAAAGGGGCGGGC
CGGGCAAAGCGGCCTGTGCGGACTTCCTGCAGAGCCGGAGCTGAGGTCGGGCGTCTGGAAGCTGCTTGAAACAATTCGTT
TGTTGAACCGTGAACGAAGGCGTCCTCTCGAGCTTCGTGAAGAGCTGCTCGTGCGTCAGGCGTTTTTTAAGGGTTCCCGG
GGGCATTACTGTGCGGCATCGTGCGGTTCGAGTCTTGCGGTAACACCTGAAGGTTATTTGTATCCTTGCACGCAGACCAT
GGGCGATCCGTCTTGCTATCTGGGTCAGCTTGAGGATGTTTGTTTCCGGGAGCACAGCTCTCCTCTGATGTCTTCGGTTG
TGGACGAAGCCGGTTGCTCGGATTGCCCGCTTGAGGGGCGTTGTCCAGGTGAGTGCCCTTCACGACTTCTGTATAACCGA
GGAAATGGCGAGCGACTTTTCTGCGAACTGTATCGTACCATAGTTGATTTTTGCGTTCAAACAGGAGACATCGTCGTATG
A

Upstream 100 bases:

>100_bases
TCGAGTTTTCGTTTCGCTCAATGCAGGAGTGGCGCTCTAAAATAGAGAGGCAGAAGATAGCGCTCGGCGATGTTTTCCCT
GCCAAAGGGGATCGGAAATC

Downstream 100 bases:

>100_bases
AACCTTATTGCCTTTGCTATTTCACCATAAACCATTCAGAGGTTCCTTCATTCAGTGCCGGTGTTCGTGAGTACATCAGT
GATGGCGGAGCGGTGGATGT

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 345

Protein sequence:

>346_residues
MSRREISYLILVVTRSCNLSCVYCYENACRHDGAAMSLQTAEQAVGLVAASGKPFHIQLSGGEPLLAPDTIFAVMELIRK
KGIPAFVSLQTNGVLLDREMIRSLNGYGVSIGLSLDGPPRLQEELRGGSAATYRALRLLEDEGVPFRVTTVVSDCNVTKL
QLLPMSLHGFSMASGIALDLLVKKGRAGQSGLCGLPAEPELRSGVWKLLETIRLLNRERRRPLELREELLVRQAFFKGSR
GHYCAASCGSSLAVTPEGYLYPCTQTMGDPSCYLGQLEDVCFREHSSPLMSSVVDEAGCSDCPLEGRCPGECPSRLLYNR
GNGERLFCELYRTIVDFCVQTGDIVV

Sequences:

>Translated_346_residues
MSRREISYLILVVTRSCNLSCVYCYENACRHDGAAMSLQTAEQAVGLVAASGKPFHIQLSGGEPLLAPDTIFAVMELIRK
KGIPAFVSLQTNGVLLDREMIRSLNGYGVSIGLSLDGPPRLQEELRGGSAATYRALRLLEDEGVPFRVTTVVSDCNVTKL
QLLPMSLHGFSMASGIALDLLVKKGRAGQSGLCGLPAEPELRSGVWKLLETIRLLNRERRRPLELREELLVRQAFFKGSR
GHYCAASCGSSLAVTPEGYLYPCTQTMGDPSCYLGQLEDVCFREHSSPLMSSVVDEAGCSDCPLEGRCPGECPSRLLYNR
GNGERLFCELYRTIVDFCVQTGDIVV
>Mature_345_residues
SRREISYLILVVTRSCNLSCVYCYENACRHDGAAMSLQTAEQAVGLVAASGKPFHIQLSGGEPLLAPDTIFAVMELIRKK
GIPAFVSLQTNGVLLDREMIRSLNGYGVSIGLSLDGPPRLQEELRGGSAATYRALRLLEDEGVPFRVTTVVSDCNVTKLQ
LLPMSLHGFSMASGIALDLLVKKGRAGQSGLCGLPAEPELRSGVWKLLETIRLLNRERRRPLELREELLVRQAFFKGSRG
HYCAASCGSSLAVTPEGYLYPCTQTMGDPSCYLGQLEDVCFREHSSPLMSSVVDEAGCSDCPLEGRCPGECPSRLLYNRG
NGERLFCELYRTIVDFCVQTGDIVV

Specific function: Unknown

COG id: COG0641

COG function: function code R; Arylsulfatase regulator (Fe-S oxidoreductase)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. Anaerobic sulfatase-maturating enzyme family [H]

Homologues:

Organism=Escherichia coli, GI87081923, Length=346, Percent_Identity=24.2774566473988, Blast_Score=78, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 37808; Mature: 37677

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01305 MOAA_NIFB_PQQE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
7.2 %Cys+Met (Translated Protein)
4.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
7.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRREISYLILVVTRSCNLSCVYCYENACRHDGAAMSLQTAEQAVGLVAASGKPFHIQLS
CCCCCEEEEEEEEECCCCCEEEEEECHHHCCCCCEEEHHHHHHHHEEEEECCCCEEEEEC
GGEPLLAPDTIFAVMELIRKKGIPAFVSLQTNGVLLDREMIRSLNGYGVSIGLSLDGPPR
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEECHHHHHHCCCCCEEEEEECCCCHH
LQEELRGGSAATYRALRLLEDEGVPFRVTTVVSDCNVTKLQLLPMSLHGFSMASGIALDL
HHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHCCHHEEE
LVKKGRAGQSGLCGLPAEPELRSGVWKLLETIRLLNRERRRPLELREELLVRQAFFKGSR
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
GHYCAASCGSSLAVTPEGYLYPCTQTMGDPSCYLGQLEDVCFREHSSPLMSSVVDEAGCS
CCEEHHCCCCEEEECCCCCEEECHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
DCPLEGRCPGECPSRLLYNRGNGERLFCELYRTIVDFCVQTGDIVV
CCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SRREISYLILVVTRSCNLSCVYCYENACRHDGAAMSLQTAEQAVGLVAASGKPFHIQLS
CCCCEEEEEEEEECCCCCEEEEEECHHHCCCCCEEEHHHHHHHHEEEEECCCCEEEEEC
GGEPLLAPDTIFAVMELIRKKGIPAFVSLQTNGVLLDREMIRSLNGYGVSIGLSLDGPPR
CCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCEEECHHHHHHCCCCCEEEEEECCCCHH
LQEELRGGSAATYRALRLLEDEGVPFRVTTVVSDCNVTKLQLLPMSLHGFSMASGIALDL
HHHHHCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEECCCHHHHCCHHEEE
LVKKGRAGQSGLCGLPAEPELRSGVWKLLETIRLLNRERRRPLELREELLVRQAFFKGSR
HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
GHYCAASCGSSLAVTPEGYLYPCTQTMGDPSCYLGQLEDVCFREHSSPLMSSVVDEAGCS
CCEEHHCCCCEEEECCCCCEEECHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC
DCPLEGRCPGECPSRLLYNRGNGERLFCELYRTIVDFCVQTGDIVV
CCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]