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The map label for this gene is ybhR [H]

Identifier: 194333926

GI number: 194333926

Start: 1215121

End: 1216260

Strand: Reverse

Name: ybhR [H]

Synonym: Paes_1106

Alternate gene names: 194333926

Gene position: 1216260-1215121 (Counterclockwise)

Preceding gene: 194333927

Following gene: 194333910

Centisome position: 48.4

GC content: 47.81

Gene sequence:

>1140_bases
ATGAGAACAATTGTCTTTCTCTTACGCAAAGAGTTTCTGCAAATATTCAGGAACAAGGGTATGCTGCCTATCATGTTTAT
CATGCCCTTCATCCAGCTTATCATTCTTTCCAATGCGGCAACATTTGACGTAAAAAATGTGCAGTTCTCACTTATTGACA
AGGATCGTTCCGTATTATCAGACCTCTTTGCCGAACACGTCGGCTCATCGCCATATTTCACGCTCACGTCAGGAAGCATG
AGCGATCAACAGGCATTCAATGCAATTCTTGAAGGTCGTGACAAACTCAGCATTGTCATACCTGAAGATTTCGAAAAAGA
TCTTTATCGTTACGCTCAAGCCAAAGTCCAGCTGATGATCGATGCAGAAGACGGCTATTCCGCCGGCATTATTCAAGCCT
ACACCCGTGAAATCATCGAATCGTTCAATGGGACAATCATTTCTCAACGTCTCCTGGCGCCAGGAACCAGAACGTTAACG
GAAAGCCCGCAGGTGGGCAATATCCGCATTATTTCCAGTAGCTGGTTCAACCCGGAACTGGACTATATCGACTTTATGGT
GCCGGGCATTCTGGTTATTCTTGTCACCATGATCGGACTGTTTCTTTCCGCGATGAACATTGTCAGAGAAAAAGAGGCAG
GAACCATAGAGCAGATCAATGTCACTCCGGTCAAGCGCTATCAGTTCATTACAGGAAAACTCCTGCCTTTCTGGATTATC
GGGCTGGGTGAGCTGACTGTCGGTCTCTTTATTGCCAGGGTGCTGTTTGATGTTCCGATGCTCGGAAGCTATCCACTCAT
CTATGCCGTTGCCTCGATATATCTGCTCGTCGTTCTGGGTATGGGGATGCTGATTTCAACTGTCACGGAAACCCAGCAGC
AAGCCATGTTCATTGCCTGGTTCTTCATGGTCATCTTCGTTCTGATGAGTGGCCTGTTTACGACGATAGAAAGCATGCCC
GTCTGGGCTCAAAACCTGACGCTCCTGAACCCGGTCCGGTTCTTCGTCGATATCATGCGGAGAATCATGCTCAAAGGATC
CGGCATACAGCACATCGCCCGCGAAACAACCGGACTTGCCGTCTACGCCGTTATTATGCTCAGCGTTGCCGTCAACCGCT
ACAAAAAAACATCAGGCTGA

Upstream 100 bases:

>100_bases
CAGGAGACCCTGGTTCTTGCTTCAATGACCCTTGCGCTCGGAATCCTGAGCATCAGGAAGTTCTCCATACGATTGACCTG
AACAGGGGAGTGCATCGACT

Downstream 100 bases:

>100_bases
CGCCATAGTAACAAAGAATCTCTTCTTCATGAAAAGAGTCCTATAACCCAAATTATGTAAAGTAAGGTATGTTTACAGAA
CATACCTTACTTTACATAAT

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 379

Protein sequence:

>379_residues
MRTIVFLLRKEFLQIFRNKGMLPIMFIMPFIQLIILSNAATFDVKNVQFSLIDKDRSVLSDLFAEHVGSSPYFTLTSGSM
SDQQAFNAILEGRDKLSIVIPEDFEKDLYRYAQAKVQLMIDAEDGYSAGIIQAYTREIIESFNGTIISQRLLAPGTRTLT
ESPQVGNIRIISSSWFNPELDYIDFMVPGILVILVTMIGLFLSAMNIVREKEAGTIEQINVTPVKRYQFITGKLLPFWII
GLGELTVGLFIARVLFDVPMLGSYPLIYAVASIYLLVVLGMGMLISTVTETQQQAMFIAWFFMVIFVLMSGLFTTIESMP
VWAQNLTLLNPVRFFVDIMRRIMLKGSGIQHIARETTGLAVYAVIMLSVAVNRYKKTSG

Sequences:

>Translated_379_residues
MRTIVFLLRKEFLQIFRNKGMLPIMFIMPFIQLIILSNAATFDVKNVQFSLIDKDRSVLSDLFAEHVGSSPYFTLTSGSM
SDQQAFNAILEGRDKLSIVIPEDFEKDLYRYAQAKVQLMIDAEDGYSAGIIQAYTREIIESFNGTIISQRLLAPGTRTLT
ESPQVGNIRIISSSWFNPELDYIDFMVPGILVILVTMIGLFLSAMNIVREKEAGTIEQINVTPVKRYQFITGKLLPFWII
GLGELTVGLFIARVLFDVPMLGSYPLIYAVASIYLLVVLGMGMLISTVTETQQQAMFIAWFFMVIFVLMSGLFTTIESMP
VWAQNLTLLNPVRFFVDIMRRIMLKGSGIQHIARETTGLAVYAVIMLSVAVNRYKKTSG
>Mature_379_residues
MRTIVFLLRKEFLQIFRNKGMLPIMFIMPFIQLIILSNAATFDVKNVQFSLIDKDRSVLSDLFAEHVGSSPYFTLTSGSM
SDQQAFNAILEGRDKLSIVIPEDFEKDLYRYAQAKVQLMIDAEDGYSAGIIQAYTREIIESFNGTIISQRLLAPGTRTLT
ESPQVGNIRIISSSWFNPELDYIDFMVPGILVILVTMIGLFLSAMNIVREKEAGTIEQINVTPVKRYQFITGKLLPFWII
GLGELTVGLFIARVLFDVPMLGSYPLIYAVASIYLLVVLGMGMLISTVTETQQQAMFIAWFFMVIFVLMSGLFTTIESMP
VWAQNLTLLNPVRFFVDIMRRIMLKGSGIQHIARETTGLAVYAVIMLSVAVNRYKKTSG

Specific function: Unknown

COG id: COG0842

COG function: function code V; ABC-type multidrug transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

Organism=Escherichia coli, GI1787010, Length=367, Percent_Identity=30.2452316076294, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI1787011, Length=348, Percent_Identity=28.1609195402299, Blast_Score=137, Evalue=1e-33,
Organism=Escherichia coli, GI48994943, Length=341, Percent_Identity=26.099706744868, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI226510979, Length=395, Percent_Identity=24.5569620253165, Blast_Score=96, Evalue=3e-21,
Organism=Drosophila melanogaster, GI85725260, Length=379, Percent_Identity=19.7889182058047, Blast_Score=69, Evalue=5e-12,
Organism=Drosophila melanogaster, GI85725262, Length=379, Percent_Identity=19.7889182058047, Blast_Score=69, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013526
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 42692; Mature: 42692

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTIVFLLRKEFLQIFRNKGMLPIMFIMPFIQLIILSNAATFDVKNVQFSLIDKDRSVLS
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHH
DLFAEHVGSSPYFTLTSGSMSDQQAFNAILEGRDKLSIVIPEDFEKDLYRYAQAKVQLMI
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHEEEEEE
DAEDGYSAGIIQAYTREIIESFNGTIISQRLLAPGTRTLTESPQVGNIRIISSSWFNPEL
ECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCH
DYIDFMVPGILVILVTMIGLFLSAMNIVREKEAGTIEQINVTPVKRYQFITGKLLPFWII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH
GLGELTVGLFIARVLFDVPMLGSYPLIYAVASIYLLVVLGMGMLISTVTETQQQAMFIAW
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFMVIFVLMSGLFTTIESMPVWAQNLTLLNPVRFFVDIMRRIMLKGSGIQHIARETTGLA
HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VYAVIMLSVAVNRYKKTSG
HHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRTIVFLLRKEFLQIFRNKGMLPIMFIMPFIQLIILSNAATFDVKNVQFSLIDKDRSVLS
CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEEEEHHHHHHHH
DLFAEHVGSSPYFTLTSGSMSDQQAFNAILEGRDKLSIVIPEDFEKDLYRYAQAKVQLMI
HHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHEEEEEE
DAEDGYSAGIIQAYTREIIESFNGTIISQRLLAPGTRTLTESPQVGNIRIISSSWFNPEL
ECCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCH
DYIDFMVPGILVILVTMIGLFLSAMNIVREKEAGTIEQINVTPVKRYQFITGKLLPFWII
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHHHHH
GLGELTVGLFIARVLFDVPMLGSYPLIYAVASIYLLVVLGMGMLISTVTETQQQAMFIAW
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FFMVIFVLMSGLFTTIESMPVWAQNLTLLNPVRFFVDIMRRIMLKGSGIQHIARETTGLA
HHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
VYAVIMLSVAVNRYKKTSG
HHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]