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The map label for this gene is ymdB [C]

Identifier: 193213713

GI number: 193213713

Start: 2282145

End: 2282663

Strand: Direct

Name: ymdB [C]

Synonym: Cpar_2080

Alternate gene names: 193213713

Gene position: 2282145-2282663 (Clockwise)

Preceding gene: 193213712

Following gene: NA

Centisome position: 99.69

GC content: 61.85

Gene sequence:

>519_bases
ATGCGGCAATCCGCTCTGATCCATCCCATCAAGGCCGACATCACCACGTTGAAGGTCGACGCTATCGTCAACGCGGCCAA
TTCGAGTCTGCTCGGTGGTGGCGGAGTCGATGGAGCGATCCATCGCGCCGCAGGCCCGGAGCTGCTCGAAGCGTGCCGTG
CACTTGGCGGATGCCCGACCGGCGAGGCGAGGATCACGAAGGGCTATCGACTGCCCGCCAGCTATGTCATCCACACCGTT
GGCCCGGTCTGGCATGGCGACAGCCACAACGAAGCCGAGCTGCTCACCTCCTGTTACCGCAACGCCCTGAAACTTGCCAT
CGAGCACCAGTGCCACACCATTGCATTCCCCTCCATCAGCACCGGAGCGTATGGCTTCCCCATCGAACAGGCCGCCGCCA
TCGCAACGGCAACCGTGCACGAAGTTCTGGCGGAAGAAACCACCATCGATGAGGTGCTCTTCTGCTGCTTTTCCGACCGC
GATCTGGAGGTTTATCGCCAAGCCCTCGCAGAGCGGTAA

Upstream 100 bases:

>100_bases
GAGCGCTTCGGAAACAGCCGAGACGATTTCTGACGAAGCCGAGAAAGCGTAAAACAACGCCTGACAGCGGCGTTTCGAAC
CAACCGAACCCGGTCGAACC

Downstream 100 bases:

>100_bases
GCGCCCGTCAAGAGCAGAAAAACAAAACCCCCGACTTGAATCGGGGGAATTAATGCTTTGCTTGTCCTCCGCTGTTTACG
GAGTATTCGGTCCATTGGGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MRQSALIHPIKADITTLKVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEACRALGGCPTGEARITKGYRLPASYVIHTV
GPVWHGDSHNEAELLTSCYRNALKLAIEHQCHTIAFPSISTGAYGFPIEQAAAIATATVHEVLAEETTIDEVLFCCFSDR
DLEVYRQALAER

Sequences:

>Translated_172_residues
MRQSALIHPIKADITTLKVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEACRALGGCPTGEARITKGYRLPASYVIHTV
GPVWHGDSHNEAELLTSCYRNALKLAIEHQCHTIAFPSISTGAYGFPIEQAAAIATATVHEVLAEETTIDEVLFCCFSDR
DLEVYRQALAER
>Mature_172_residues
MRQSALIHPIKADITTLKVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEACRALGGCPTGEARITKGYRLPASYVIHTV
GPVWHGDSHNEAELLTSCYRNALKLAIEHQCHTIAFPSISTGAYGFPIEQAAAIATATVHEVLAEETTIDEVLFCCFSDR
DLEVYRQALAER

Specific function: Unknown

COG id: COG2110

COG function: function code R; Predicted phosphatase homologous to the C-terminal domain of histone macroH2A1

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Macro domain [H]

Homologues:

Organism=Homo sapiens, GI13569840, Length=165, Percent_Identity=55.1515151515151, Blast_Score=184, Evalue=3e-47,
Organism=Homo sapiens, GI117968621, Length=165, Percent_Identity=56.3636363636364, Blast_Score=181, Evalue=2e-46,
Organism=Homo sapiens, GI207450721, Length=161, Percent_Identity=40.9937888198758, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI8923143, Length=161, Percent_Identity=40.9937888198758, Blast_Score=112, Evalue=2e-25,
Organism=Homo sapiens, GI20336746, Length=168, Percent_Identity=32.7380952380952, Blast_Score=92, Evalue=3e-19,
Organism=Homo sapiens, GI154813199, Length=167, Percent_Identity=31.7365269461078, Blast_Score=88, Evalue=3e-18,
Organism=Homo sapiens, GI93141018, Length=172, Percent_Identity=30.8139534883721, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI93141020, Length=172, Percent_Identity=30.8139534883721, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI4758496, Length=172, Percent_Identity=30.8139534883721, Blast_Score=84, Evalue=5e-17,
Organism=Homo sapiens, GI226371718, Length=140, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226371716, Length=140, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226371714, Length=140, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226371712, Length=140, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226371710, Length=140, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Homo sapiens, GI226371706, Length=140, Percent_Identity=35.7142857142857, Blast_Score=77, Evalue=1e-14,
Organism=Escherichia coli, GI1787283, Length=170, Percent_Identity=50, Blast_Score=170, Evalue=4e-44,
Organism=Caenorhabditis elegans, GI17538214, Length=162, Percent_Identity=48.1481481481481, Blast_Score=138, Evalue=1e-33,
Organism=Drosophila melanogaster, GI24586353, Length=145, Percent_Identity=40.6896551724138, Blast_Score=95, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002589
- InterPro:   IPR022942 [H]

Pfam domain/function: PF01661 Macro [H]

EC number: NA

Molecular weight: Translated: 18353; Mature: 18353

Theoretical pI: Translated: 5.80; Mature: 5.80

Prosite motif: PS51154 MACRO

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQSALIHPIKADITTLKVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEACRALGGCPT
CCCCCCCCHHHCCHHEEEHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCC
GEARITKGYRLPASYVIHTVGPVWHGDSHNEAELLTSCYRNALKLAIEHQCHTIAFPSIS
CCCEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCC
TGAYGFPIEQAAAIATATVHEVLAEETTIDEVLFCCFSDRDLEVYRQALAER
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MRQSALIHPIKADITTLKVDAIVNAANSSLLGGGGVDGAIHRAAGPELLEACRALGGCPT
CCCCCCCCHHHCCHHEEEHHHHHHHCCCCCCCCCCCCCHHHHCCCHHHHHHHHHHCCCCC
GEARITKGYRLPASYVIHTVGPVWHGDSHNEAELLTSCYRNALKLAIEHQCHTIAFPSIS
CCCEECCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCC
TGAYGFPIEQAAAIATATVHEVLAEETTIDEVLFCCFSDRDLEVYRQALAER
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]