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The map label for this gene is rlpA [H]

Identifier: 193213665

GI number: 193213665

Start: 2232819

End: 2233334

Strand: Direct

Name: rlpA [H]

Synonym: Cpar_2031

Alternate gene names: 193213665

Gene position: 2232819-2233334 (Clockwise)

Preceding gene: 193213658

Following gene: 193213668

Centisome position: 97.53

GC content: 57.56

Gene sequence:

>516_bases
ATGATGATATTCAAGCGGTTTCCTCTTCTTCTGCTCGCTCTGTTTCTTGCCCTCGGAGCCTGCTCGACCTCGAAAGGGCC
TTACACTTCACGGCGATACGTCCCCGGAATCTCACCCGAGGAGGCGTACCGGCTGGGCAAGCTCAAGAACACCCCCTATC
TTATCGACAACAAGCTCTACGTCCCCATGAGCTTTGAGCAGGTGTATGCCTACGAAGAGACCGGCATCGCGTCGTGGTAC
GGCCGGGAAACGCTTGAAAAAAACAACAGCCAGCCGACCGCTTACGGCGAAATCTTCGACCCCGGCCAGCCCAGCGCCGC
GCACAAATACCTGCCACTCCCCATGCTCGTCAGGGTCACCAACCTCGACAACAACCGCTCGATTATCGTTCGCGTCAACG
ACCGCGGCCCGTTCGTCGATGGCCGCGTGATCGACCTGAGCGCCCAAGCCGCCAAAGAGCTTGGCTTCTATGAAAAAGGG
ACAGCCAGGGTAAAGATCGAATCCGTTTACCGATAG

Upstream 100 bases:

>100_bases
CTCATGAATATTTTTTTCAAATAGCTATTTTTTACCTACGCGACAGACCCCGTCGAGTGATCACACGCGGCTCATCCGGT
CAACAGAAAAACGCCAAGCC

Downstream 100 bases:

>100_bases
CGATTAGCCGCACGGCCCGGAGACCATGAAGGCTTCGTGAAATGAAACAGTGCCCGTTGGTTCCGGCCCATCGAACACAA
GCGCAAAAAAGACCTCCGGC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 171; Mature: 171

Protein sequence:

>171_residues
MMIFKRFPLLLLALFLALGACSTSKGPYTSRRYVPGISPEEAYRLGKLKNTPYLIDNKLYVPMSFEQVYAYEETGIASWY
GRETLEKNNSQPTAYGEIFDPGQPSAAHKYLPLPMLVRVTNLDNNRSIIVRVNDRGPFVDGRVIDLSAQAAKELGFYEKG
TARVKIESVYR

Sequences:

>Translated_171_residues
MMIFKRFPLLLLALFLALGACSTSKGPYTSRRYVPGISPEEAYRLGKLKNTPYLIDNKLYVPMSFEQVYAYEETGIASWY
GRETLEKNNSQPTAYGEIFDPGQPSAAHKYLPLPMLVRVTNLDNNRSIIVRVNDRGPFVDGRVIDLSAQAAKELGFYEKG
TARVKIESVYR
>Mature_171_residues
MMIFKRFPLLLLALFLALGACSTSKGPYTSRRYVPGISPEEAYRLGKLKNTPYLIDNKLYVPMSFEQVYAYEETGIASWY
GRETLEKNNSQPTAYGEIFDPGQPSAAHKYLPLPMLVRVTNLDNNRSIIVRVNDRGPFVDGRVIDLSAQAAKELGFYEKG
TARVKIESVYR

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=120, Percent_Identity=40, Blast_Score=79, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009009
- InterPro:   IPR012997
- InterPro:   IPR007730 [H]

Pfam domain/function: PF03330 DPBB_1; PF05036 SPOR [H]

EC number: NA

Molecular weight: Translated: 19337; Mature: 19337

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMIFKRFPLLLLALFLALGACSTSKGPYTSRRYVPGISPEEAYRLGKLKNTPYLIDNKLY
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCEEE
VPMSFEQVYAYEETGIASWYGRETLEKNNSQPTAYGEIFDPGQPSAAHKYLPLPMLVRVT
ECCCHHHHEEECCCCCCHHHCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEE
NLDNNRSIIVRVNDRGPFVDGRVIDLSAQAAKELGFYEKGTARVKIESVYR
CCCCCCEEEEEECCCCCEECCEEEECCHHHHHHCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MMIFKRFPLLLLALFLALGACSTSKGPYTSRRYVPGISPEEAYRLGKLKNTPYLIDNKLY
CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCEEECCEEE
VPMSFEQVYAYEETGIASWYGRETLEKNNSQPTAYGEIFDPGQPSAAHKYLPLPMLVRVT
ECCCHHHHEEECCCCCCHHHCCHHHHCCCCCCCEECCCCCCCCCCCCCCCCCCCEEEEEE
NLDNNRSIIVRVNDRGPFVDGRVIDLSAQAAKELGFYEKGTARVKIESVYR
CCCCCCEEEEEECCCCCEECCEEEECCHHHHHHCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]