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The map label for this gene is yvrC [H]

Identifier: 193212843

GI number: 193212843

Start: 1304006

End: 1304902

Strand: Direct

Name: yvrC [H]

Synonym: Cpar_1190

Alternate gene names: 193212843

Gene position: 1304006-1304902 (Clockwise)

Preceding gene: 193212842

Following gene: 193212844

Centisome position: 56.96

GC content: 62.43

Gene sequence:

>897_bases
ATGCCCGCTTGCTCACGCCGTAATCTAACTCCCCTTTTCATTCTCCTCGCGCTCTGTCTGCAAACGCTGGCGGGGTGCTC
GAAACCGCAGAGCTCCGACAATGCAGAGAAAGCGGTGGCGGAAGTTCCGCAACGCATCGTCAGCCTCGCGCCGAGCCTCA
CCGAGATGCTCTACGCCATCGGCGCGGGGCCACAGCTCGTAGGCAGAACCAGCGCCTGCGACTGGCCCGCCGAAGCCGAA
AAGGTGGCGGTGGTCGGTTCGTTCGGACGCCCGTCACTGGAGGTGCTCGCATCGATGAATCCCGACCTCGTGCTCGACGT
CGATCTTGACGATGACCAGACGGCGAAAAAAATGGCCGAGATGCACATCCGTCGCGAGCACATCCGCTGCCAGGATCCCG
AGGAGCTGCCCACCGCACTCCGCAAGCTCGGCGCGCTCACCGGCCACGTCCGGCAGGCAGACAGCCTCGCGACGGTGATC
GAGCAAGGACTGGCGAAGTATCGCAAGGAGGCCGATGCGAAGCAGCACAAAACCCGCATCTACCTTGAAATCTGGAACGA
TCCGCTCTGGACAGGCGGTCGCGACAGCTTCGTGTCGCGGCTGATCGGTTACGCGGGCGGCCAGAACATCGGTGACGAGG
TCGAGAAGGAGTACTTCCAGGTCTCACCGGAATGGGTCATCAAGCAGAATCCGGACGTGATCGCCTGCATGTACATGGCC
AACGAAGCGCCTGCCGCTGCCGCTTTGAAGCAGCGTCCCGGCTGGCAGGGCATCAGCGCCGTGCGCAACGACCGGGTTTA
CGACAAGTTCGACAACCGCCTCTACCTGCGCCCCGGCCCGCGCATCCTCGAAGGCATCGCCGGAATGAAAAAGCTGATCG
AGAGCAATGAAGAGTAA

Upstream 100 bases:

>100_bases
CAAGAGCAGCCCGAAGAAGTATCCGAAATGGCGTGGTTCCCACTCGACGAAGCGCTCTCGATGCAACTTGCTTTCACCCA
TAACCTTGTCCTGCAACAGT

Downstream 100 bases:

>100_bases
TCGTGGCTTTCTCATCGCCGCCCCGTCGAGCGGCTCCGGCAAGACGACTATCACCCTCGGTCTGTTGCGGCTTTTCGCGC
GGCGCGGCATGGAGGTGCAG

Product: periplasmic binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 298; Mature: 297

Protein sequence:

>298_residues
MPACSRRNLTPLFILLALCLQTLAGCSKPQSSDNAEKAVAEVPQRIVSLAPSLTEMLYAIGAGPQLVGRTSACDWPAEAE
KVAVVGSFGRPSLEVLASMNPDLVLDVDLDDDQTAKKMAEMHIRREHIRCQDPEELPTALRKLGALTGHVRQADSLATVI
EQGLAKYRKEADAKQHKTRIYLEIWNDPLWTGGRDSFVSRLIGYAGGQNIGDEVEKEYFQVSPEWVIKQNPDVIACMYMA
NEAPAAAALKQRPGWQGISAVRNDRVYDKFDNRLYLRPGPRILEGIAGMKKLIESNEE

Sequences:

>Translated_298_residues
MPACSRRNLTPLFILLALCLQTLAGCSKPQSSDNAEKAVAEVPQRIVSLAPSLTEMLYAIGAGPQLVGRTSACDWPAEAE
KVAVVGSFGRPSLEVLASMNPDLVLDVDLDDDQTAKKMAEMHIRREHIRCQDPEELPTALRKLGALTGHVRQADSLATVI
EQGLAKYRKEADAKQHKTRIYLEIWNDPLWTGGRDSFVSRLIGYAGGQNIGDEVEKEYFQVSPEWVIKQNPDVIACMYMA
NEAPAAAALKQRPGWQGISAVRNDRVYDKFDNRLYLRPGPRILEGIAGMKKLIESNEE
>Mature_297_residues
PACSRRNLTPLFILLALCLQTLAGCSKPQSSDNAEKAVAEVPQRIVSLAPSLTEMLYAIGAGPQLVGRTSACDWPAEAEK
VAVVGSFGRPSLEVLASMNPDLVLDVDLDDDQTAKKMAEMHIRREHIRCQDPEELPTALRKLGALTGHVRQADSLATVIE
QGLAKYRKEADAKQHKTRIYLEIWNDPLWTGGRDSFVSRLIGYAGGQNIGDEVEKEYFQVSPEWVIKQNPDVIACMYMAN
EAPAAAALKQRPGWQGISAVRNDRVYDKFDNRLYLRPGPRILEGIAGMKKLIESNEE

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG0614

COG function: function code P; ABC-type Fe3+-hydroxamate transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Fe/B12 periplasmic-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786353, Length=201, Percent_Identity=25.8706467661692, Blast_Score=79, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002491 [H]

Pfam domain/function: PF01497 Peripla_BP_2 [H]

EC number: NA

Molecular weight: Translated: 32957; Mature: 32826

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50983 FE_B12_PBP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPACSRRNLTPLFILLALCLQTLAGCSKPQSSDNAEKAVAEVPQRIVSLAPSLTEMLYAI
CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
GAGPQLVGRTSACDWPAEAEKVAVVGSFGRPSLEVLASMNPDLVLDVDLDDDQTAKKMAE
CCCCHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHH
MHIRREHIRCQDPEELPTALRKLGALTGHVRQADSLATVIEQGLAKYRKEADAKQHKTRI
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
YLEIWNDPLWTGGRDSFVSRLIGYAGGQNIGDEVEKEYFQVSPEWVIKQNPDVIACMYMA
EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEEC
NEAPAAAALKQRPGWQGISAVRNDRVYDKFDNRLYLRPGPRILEGIAGMKKLIESNEE
CCCCHHHHHHHCCCCCHHHHHHCCCHHHHHCCEEEECCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
PACSRRNLTPLFILLALCLQTLAGCSKPQSSDNAEKAVAEVPQRIVSLAPSLTEMLYAI
CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHH
GAGPQLVGRTSACDWPAEAEKVAVVGSFGRPSLEVLASMNPDLVLDVDLDDDQTAKKMAE
CCCCHHHCCCCCCCCCCCCCEEEEEECCCCCHHHHHHCCCCCEEEEEECCCCHHHHHHHH
MHIRREHIRCQDPEELPTALRKLGALTGHVRQADSLATVIEQGLAKYRKEADAKQHKTRI
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEE
YLEIWNDPLWTGGRDSFVSRLIGYAGGQNIGDEVEKEYFQVSPEWVIKQNPDVIACMYMA
EEEECCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEECCCCEEEEEEEC
NEAPAAAALKQRPGWQGISAVRNDRVYDKFDNRLYLRPGPRILEGIAGMKKLIESNEE
CCCCHHHHHHHCCCCCHHHHHHCCCHHHHHCCEEEECCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9639930; 9384377 [H]