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The map label for this gene is recD [H]

Identifier: 193212684

GI number: 193212684

Start: 1138800

End: 1140545

Strand: Direct

Name: recD [H]

Synonym: Cpar_1029

Alternate gene names: 193212684

Gene position: 1138800-1140545 (Clockwise)

Preceding gene: 193212683

Following gene: 193212685

Centisome position: 49.75

GC content: 64.95

Gene sequence:

>1746_bases
ATGATCGACTTTATCGAACGACCTATCGATCGGCAGGCGGCGACATTTCTCTGCCGGGGTGTGACGGAAAACGCGGAATT
GCTGCGCACGGTGGTTTCGCTGCTCAGTCAGGCGGTGGGGCAGGGGCATGTCTGCCTCGATCTGGAGGAGATTGCCGAAG
AGCTCGTGCGGATTTCCGGACAGGATGAGCCGCTGCGCCTGTCCGACGCCGCAAGCCTCATCACCGCTCTGCGCTCGCTG
CCGACGCTCGGTGGGCCAGGGGAGCATTGCCCGTTGATTCTCGACGCCGCCGGACGGCTCTATCTCTACCGCTACTACCG
CTACGAGTCGCTGCTTGCTGACGCCATTCGCGCCCGCGCTGCGTCGGAAACAGACGAAATCGATGAAGCCGCGCTTGCCG
CGCAGCTCGATCGTTACTTTGGTTCCGACGAGTCCGGCAAGGATAACCAGCGGCAGGCCGCGCTGACGGCGCTCCGGCGG
CGCTTTTCGGTCATCTCCGGCGGCCCCGGCACCGGCAAAACCACCACAGTCGCGCGCATCCTCGGCCTCCTGCTCGAACA
ACCCGGCGGAGAGCGCCTGCGCATCGCGATGGCTGCGCCCACCGGCAAAGCCGCCGCCCGGCTCGCCTCGTCCATCGCCT
CGCTCCGGAAAACGCTGCCATGCGCTGAAGAGGTCAAACGCGCCGTCCCGAGCCAGGTTACGACGATCCACCGACTGCTC
GGCACGCTGCCCGGCTCGACTGGCTTTCGCCACAACGAGCGCAACCCGCTGCCTTGCGATGTGGTGATCGTCGATGAAGC
CTCGATGGTCGATCTGCCGCTCATGACCGCGCTCGTCACGGCGCTTCCGCCGCACGCCCGGCTCATTTTCATCGGCGACC
GCGACCAGCTCGCCTCGGTCGAAGCCGGAGCGGTGCTTGGCGACATCTGTCGCGCTGCCGAATCGCCCGGTTCCTCCATC
GCCGGATGCGTCACCGTGCTCGACCGCAACTACCGTTTCGGCGACGGCTCCGGCATCGCCGCCCTCAGCCGTGCCGTCAA
CGCTGGCGACGACAGTGAAGCGCTCCGCCTGCTCGACGACTCCAGCAGCAGCATTGTCCTCGAAGCGACGCCGACGCGCG
AAACGATCAAAAAGCGCCTCGCCGCCCCGGTGCTCGAAGGGTTCCGCCCCTGCCTCGAAGCCGAAACGCCCGCCGCAGCG
CTGCGCCTCTTCGACCGCTTCCGCATCCTCACCGCCCTGCGCGAAGGCCCGTGGGGAGCCGCCGGCATGAACCACGCCGC
CGAAACGCTGCTCCACGAAGCCGGACTCATCCGCCGCGACACGCCGTTCTACCGTGGCCGCCCCGTGCTCGTCACCGAAA
ACGACTACACCCACAAACTTTTCAACGGCGACACCGGCATCATCCTCCCCGACCCCGAAACCGGCAACCTCCGAGCCTTC
TTCGCCGCCCCCGACGGCACGATCCGCGCCATTCCGCAAGAGTTCCTGCCTAGGCACGAAACCGCTTTCGCCATGACCGT
CCACAAAAGCCAGGGATCGGAGTTTGACAGGGTTTTGATGGTTCTGCCGCCGGAGGATACTGTTTTGCTGACAAGGGAAT
TGATTTATACCGGGATTACGCGGGCGAAGCAGAAAGTTGCGATTTGGAGCGACGAGGCTGTTTTTTCGGCGGCGGTGAAG
CGCCGGACAGAGCGGAGGAGCGGGTTGAGAGAGAAGTTAGCAGTCACCTCACCTGGTTTGAATTGA

Upstream 100 bases:

>100_bases
GCGGCGAAGAGTTCGGTTTCTATCGAGACCTGCCATCCGTAGAGCTGATCCGCGAGCTGAGCGAATTGCTTGTCGAAACC
GGAACAGGGGAGGGTGAAGA

Downstream 100 bases:

>100_bases
AAAAGATTCGCGATATAATTGAAAAGCAACAGGAGCCTTCATGAAGGCATGGAATAAATACTTTGGTTGTTGAAATCGAA
TATCCTTTCGCTCAGGACGT

Product: exodeoxyribonuclease V subunit alpha

Products: NA

Alternate protein names: Exodeoxyribonuclease V 67 kDa polypeptide [H]

Number of amino acids: Translated: 581; Mature: 581

Protein sequence:

>581_residues
MIDFIERPIDRQAATFLCRGVTENAELLRTVVSLLSQAVGQGHVCLDLEEIAEELVRISGQDEPLRLSDAASLITALRSL
PTLGGPGEHCPLILDAAGRLYLYRYYRYESLLADAIRARAASETDEIDEAALAAQLDRYFGSDESGKDNQRQAALTALRR
RFSVISGGPGTGKTTTVARILGLLLEQPGGERLRIAMAAPTGKAAARLASSIASLRKTLPCAEEVKRAVPSQVTTIHRLL
GTLPGSTGFRHNERNPLPCDVVIVDEASMVDLPLMTALVTALPPHARLIFIGDRDQLASVEAGAVLGDICRAAESPGSSI
AGCVTVLDRNYRFGDGSGIAALSRAVNAGDDSEALRLLDDSSSSIVLEATPTRETIKKRLAAPVLEGFRPCLEAETPAAA
LRLFDRFRILTALREGPWGAAGMNHAAETLLHEAGLIRRDTPFYRGRPVLVTENDYTHKLFNGDTGIILPDPETGNLRAF
FAAPDGTIRAIPQEFLPRHETAFAMTVHKSQGSEFDRVLMVLPPEDTVLLTRELIYTGITRAKQKVAIWSDEAVFSAAVK
RRTERRSGLREKLAVTSPGLN

Sequences:

>Translated_581_residues
MIDFIERPIDRQAATFLCRGVTENAELLRTVVSLLSQAVGQGHVCLDLEEIAEELVRISGQDEPLRLSDAASLITALRSL
PTLGGPGEHCPLILDAAGRLYLYRYYRYESLLADAIRARAASETDEIDEAALAAQLDRYFGSDESGKDNQRQAALTALRR
RFSVISGGPGTGKTTTVARILGLLLEQPGGERLRIAMAAPTGKAAARLASSIASLRKTLPCAEEVKRAVPSQVTTIHRLL
GTLPGSTGFRHNERNPLPCDVVIVDEASMVDLPLMTALVTALPPHARLIFIGDRDQLASVEAGAVLGDICRAAESPGSSI
AGCVTVLDRNYRFGDGSGIAALSRAVNAGDDSEALRLLDDSSSSIVLEATPTRETIKKRLAAPVLEGFRPCLEAETPAAA
LRLFDRFRILTALREGPWGAAGMNHAAETLLHEAGLIRRDTPFYRGRPVLVTENDYTHKLFNGDTGIILPDPETGNLRAF
FAAPDGTIRAIPQEFLPRHETAFAMTVHKSQGSEFDRVLMVLPPEDTVLLTRELIYTGITRAKQKVAIWSDEAVFSAAVK
RRTERRSGLREKLAVTSPGLN
>Mature_581_residues
MIDFIERPIDRQAATFLCRGVTENAELLRTVVSLLSQAVGQGHVCLDLEEIAEELVRISGQDEPLRLSDAASLITALRSL
PTLGGPGEHCPLILDAAGRLYLYRYYRYESLLADAIRARAASETDEIDEAALAAQLDRYFGSDESGKDNQRQAALTALRR
RFSVISGGPGTGKTTTVARILGLLLEQPGGERLRIAMAAPTGKAAARLASSIASLRKTLPCAEEVKRAVPSQVTTIHRLL
GTLPGSTGFRHNERNPLPCDVVIVDEASMVDLPLMTALVTALPPHARLIFIGDRDQLASVEAGAVLGDICRAAESPGSSI
AGCVTVLDRNYRFGDGSGIAALSRAVNAGDDSEALRLLDDSSSSIVLEATPTRETIKKRLAAPVLEGFRPCLEAETPAAA
LRLFDRFRILTALREGPWGAAGMNHAAETLLHEAGLIRRDTPFYRGRPVLVTENDYTHKLFNGDTGIILPDPETGNLRAF
FAAPDGTIRAIPQEFLPRHETAFAMTVHKSQGSEFDRVLMVLPPEDTVLLTRELIYTGITRAKQKVAIWSDEAVFSAAVK
RRTERRSGLREKLAVTSPGLN

Specific function: Exhibits several catalytic activities, including ATP- dependent exonuclease, ATP-stimulated endonuclease, ATP-dependent unwinding and DNA-dependent ATPase activities. Strand cleavage occurs 5' to 3' during the unwinding of duplex DNA at CHI sequences, whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recD family [H]

Homologues:

Organism=Escherichia coli, GI1789182, Length=601, Percent_Identity=41.4309484193012, Blast_Score=374, Evalue=1e-105,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR007807
- InterPro:   IPR006344
- InterPro:   IPR000606 [H]

Pfam domain/function: PF05127 DUF699; PF01443 Viral_helicase1 [H]

EC number: =3.1.11.5 [H]

Molecular weight: Translated: 62882; Mature: 62882

Theoretical pI: Translated: 6.37; Mature: 6.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIDFIERPIDRQAATFLCRGVTENAELLRTVVSLLSQAVGQGHVCLDLEEIAEELVRISG
CCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCC
QDEPLRLSDAASLITALRSLPTLGGPGEHCPLILDAAGRLYLYRYYRYESLLADAIRARA
CCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHH
ASETDEIDEAALAAQLDRYFGSDESGKDNQRQAALTALRRRFSVISGGPGTGKTTTVARI
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LGLLLEQPGGERLRIAMAAPTGKAAARLASSIASLRKTLPCAEEVKRAVPSQVTTIHRLL
HHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
GTLPGSTGFRHNERNPLPCDVVIVDEASMVDLPLMTALVTALPPHARLIFIGDRDQLASV
HCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
EAGAVLGDICRAAESPGSSIAGCVTVLDRNYRFGDGSGIAALSRAVNAGDDSEALRLLDD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCC
SSSSIVLEATPTRETIKKRLAAPVLEGFRPCLEAETPAAALRLFDRFRILTALREGPWGA
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
AGMNHAAETLLHEAGLIRRDTPFYRGRPVLVTENDYTHKLFNGDTGIILPDPETGNLRAF
CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCEEEECCCCCCCEEEE
FAAPDGTIRAIPQEFLPRHETAFAMTVHKSQGSEFDRVLMVLPPEDTVLLTRELIYTGIT
EECCCCCHHHCCHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
RAKQKVAIWSDEAVFSAAVKRRTERRSGLREKLAVTSPGLN
HHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MIDFIERPIDRQAATFLCRGVTENAELLRTVVSLLSQAVGQGHVCLDLEEIAEELVRISG
CCCCHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCC
QDEPLRLSDAASLITALRSLPTLGGPGEHCPLILDAAGRLYLYRYYRYESLLADAIRARA
CCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHHHHHHHHHHHHH
ASETDEIDEAALAAQLDRYFGSDESGKDNQRQAALTALRRRFSVISGGPGTGKTTTVARI
CCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
LGLLLEQPGGERLRIAMAAPTGKAAARLASSIASLRKTLPCAEEVKRAVPSQVTTIHRLL
HHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHH
GTLPGSTGFRHNERNPLPCDVVIVDEASMVDLPLMTALVTALPPHARLIFIGDRDQLASV
HCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
EAGAVLGDICRAAESPGSSIAGCVTVLDRNYRFGDGSGIAALSRAVNAGDDSEALRLLDD
HHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCC
SSSSIVLEATPTRETIKKRLAAPVLEGFRPCLEAETPAAALRLFDRFRILTALREGPWGA
CCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
AGMNHAAETLLHEAGLIRRDTPFYRGRPVLVTENDYTHKLFNGDTGIILPDPETGNLRAF
CCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCCEECCCCEEEECCCCCCCEEEE
FAAPDGTIRAIPQEFLPRHETAFAMTVHKSQGSEFDRVLMVLPPEDTVLLTRELIYTGIT
EECCCCCHHHCCHHHCCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
RAKQKVAIWSDEAVFSAAVKRRTERRSGLREKLAVTSPGLN
HHHHEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 3537961; 9278503; 3537960 [H]