| Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
|---|---|
| Accession | NC_011027 |
| Length | 2,289,249 |
Click here to switch to the map view.
The map label for this gene is trx2 [H]
Identifier: 193212528
GI number: 193212528
Start: 950632
End: 950961
Strand: Direct
Name: trx2 [H]
Synonym: Cpar_0868
Alternate gene names: 193212528
Gene position: 950632-950961 (Clockwise)
Preceding gene: 193212527
Following gene: 193212529
Centisome position: 41.53
GC content: 51.21
Gene sequence:
>330_bases ATGAGCGGAAAATATTTTGTGGCTACTGATCAGAATTTCCAGTCTGATATCATCAACTCTGATAAAGTGGCTCTCGTTGA TTTCTGGGCTTCCTGGTGTGGCCCGTGCATGATGCTCGGCCCGGTTATCGAAGAGCTTGCCGGTGATTACGAAGGCAAGG CCGTCATCGCCAAACTCAACGTCGATGAGAACCCCAACACGGCAGCACAGTTCGGTATTCGCAGCATTCCTACCATGCTG ATCTTCAAAGGCGGACAGGTTGTTGACCAGATGGTCGGCGCTCTTCCCAAGAACATGATCGCAAAGAAGATCGACGAGTA CCTCGCCTGA
Upstream 100 bases:
>100_bases GAATTTCAGCACTTGTTGCCAAGTTCTGATTTATTCAGTTATATTGGCATAGAGTAACAGTGTTTCTCTTATCAATTGTT AACCCTTATCGTTAGATCTT
Downstream 100 bases:
>100_bases TTTTCCTTCCGTTTTTTTCTTCAACTATCCCGGCTTCATGCCGGGATAGTTATATCTAAGCATACCCCAACACATCTTCC CGGAGATCAACGATGGATAA
Product: thioredoxin
Products: NA
Alternate protein names: Trx-2 [H]
Number of amino acids: Translated: 109; Mature: 108
Protein sequence:
>109_residues MSGKYFVATDQNFQSDIINSDKVALVDFWASWCGPCMMLGPVIEELAGDYEGKAVIAKLNVDENPNTAAQFGIRSIPTML IFKGGQVVDQMVGALPKNMIAKKIDEYLA
Sequences:
>Translated_109_residues MSGKYFVATDQNFQSDIINSDKVALVDFWASWCGPCMMLGPVIEELAGDYEGKAVIAKLNVDENPNTAAQFGIRSIPTML IFKGGQVVDQMVGALPKNMIAKKIDEYLA >Mature_108_residues SGKYFVATDQNFQSDIINSDKVALVDFWASWCGPCMMLGPVIEELAGDYEGKAVIAKLNVDENPNTAAQFGIRSIPTMLI FKGGQVVDQMVGALPKNMIAKKIDEYLA
Specific function: Participates in various redox reactions through the reversible oxidation of its active center dithiol to a disulfide and catalyzes dithiol-disulfide exchange reactions [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Homo sapiens, GI21361403, Length=82, Percent_Identity=41.4634146341463, Blast_Score=86, Evalue=6e-18, Organism=Escherichia coli, GI87082331, Length=109, Percent_Identity=49.5412844036697, Blast_Score=125, Evalue=6e-31, Organism=Escherichia coli, GI1788936, Length=106, Percent_Identity=39.622641509434, Blast_Score=91, Evalue=2e-20, Organism=Escherichia coli, GI87081747, Length=81, Percent_Identity=40.7407407407407, Blast_Score=75, Evalue=1e-15, Organism=Caenorhabditis elegans, GI212646193, Length=99, Percent_Identity=36.3636363636364, Blast_Score=79, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17510299, Length=107, Percent_Identity=37.3831775700935, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17507705, Length=91, Percent_Identity=32.967032967033, Blast_Score=70, Evalue=2e-13, Organism=Caenorhabditis elegans, GI71998175, Length=96, Percent_Identity=38.5416666666667, Blast_Score=69, Evalue=7e-13, Organism=Caenorhabditis elegans, GI71980562, Length=102, Percent_Identity=28.4313725490196, Blast_Score=67, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17509965, Length=67, Percent_Identity=43.2835820895522, Blast_Score=66, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71980565, Length=91, Percent_Identity=27.4725274725275, Blast_Score=65, Evalue=6e-12, Organism=Saccharomyces cerevisiae, GI6321648, Length=85, Percent_Identity=42.3529411764706, Blast_Score=80, Evalue=5e-17, Organism=Saccharomyces cerevisiae, GI6323072, Length=79, Percent_Identity=44.3037974683544, Blast_Score=75, Evalue=2e-15, Organism=Saccharomyces cerevisiae, GI6319925, Length=85, Percent_Identity=35.2941176470588, Blast_Score=65, Evalue=2e-12, Organism=Drosophila melanogaster, GI24664269, Length=96, Percent_Identity=39.5833333333333, Blast_Score=86, Evalue=5e-18, Organism=Drosophila melanogaster, GI28573567, Length=87, Percent_Identity=37.9310344827586, Blast_Score=86, Evalue=7e-18, Organism=Drosophila melanogaster, GI24639826, Length=81, Percent_Identity=40.7407407407407, Blast_Score=84, Evalue=1e-17, Organism=Drosophila melanogaster, GI17648013, Length=80, Percent_Identity=37.5, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI24583090, Length=80, Percent_Identity=37.5, Blast_Score=71, Evalue=2e-13, Organism=Drosophila melanogaster, GI17530795, Length=85, Percent_Identity=34.1176470588235, Blast_Score=69, Evalue=7e-13, Organism=Drosophila melanogaster, GI24658597, Length=100, Percent_Identity=33, Blast_Score=66, Evalue=4e-12, Organism=Drosophila melanogaster, GI24639068, Length=103, Percent_Identity=33.9805825242718, Blast_Score=66, Evalue=5e-12, Organism=Drosophila melanogaster, GI21358065, Length=89, Percent_Identity=32.5842696629214, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI19921434, Length=74, Percent_Identity=35.1351351351351, Blast_Score=62, Evalue=8e-11,
Paralogues:
None
Copy number: 3,500 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF00085 Thioredoxin [H]
EC number: NA
Molecular weight: Translated: 11905; Mature: 11774
Theoretical pI: Translated: 4.36; Mature: 4.36
Prosite motif: PS00194 THIOREDOXIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 5.5 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 6.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGKYFVATDQNFQSDIINSDKVALVDFWASWCGPCMMLGPVIEELAGDYEGKAVIAKLN CCCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC VDENPNTAAQFGIRSIPTMLIFKGGQVVDQMVGALPKNMIAKKIDEYLA CCCCCCHHHHHHHHHCCHHEEECCCHHHHHHHHHCCHHHHHHHHHHHCC >Mature Secondary Structure SGKYFVATDQNFQSDIINSDKVALVDFWASWCGPCMMLGPVIEELAGDYEGKAVIAKLN CCCEEEEECCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEC VDENPNTAAQFGIRSIPTMLIFKGGQVVDQMVGALPKNMIAKKIDEYLA CCCCCCHHHHHHHHHCCHHEEECCCHHHHHHHHHCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Reduction reactions; participates in dithiol-disulfide exchange reactions [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12093901 [H]