| Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
|---|---|
| Accession | NC_011027 |
| Length | 2,289,249 |
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The map label for this gene is comEC [H]
Identifier: 193212454
GI number: 193212454
Start: 855432
End: 857618
Strand: Direct
Name: comEC [H]
Synonym: Cpar_0791
Alternate gene names: 193212454
Gene position: 855432-857618 (Clockwise)
Preceding gene: 193212452
Following gene: 193212460
Centisome position: 37.37
GC content: 57.66
Gene sequence:
>2187_bases ATGAAGCGGTTTTTCCTTCCTGCTCATCCAGCACTGCGCCTGCTTGCCTGCGCCGTTTTCGGCATTCTGGCCGCCATTGC TTTGCCGTTTTCGCCTTTTGGCTGGCTTGCCGTGGCGCTGTTTGCTTGCATCGTGACCGGCCTTCTTTTGTTCGTTCATC GGAAACGGCTTCTGGTGAGCAAGCTGTCGGCACTTTTGGCTGTGAGCTACCTGCTGATGGTGTTTGCCGGGTTTGCTTTT TATGCTGCAGCAGTTTTTCGGCTCGTGCCTTCACCTTCGTTGCTTTCGTGGGTTGGGCGTGAGGTGATTGTGTCCGGCAT TGTGGATGCTCGTCCGGTCGTGAACCACGGCAAAGCGCGCTTGCGCGTGAGTGCTCGCGAGGTGTTCGAAAACGGGCGCA CGACTCGGGTCGATGAGCCGGTGACGGTGGTTATCCGCATGTCTGGCGATCAGCAGTTCAGGATTCAGCAAGGTGATTTT GTTCACGTCAAGGGCTCGGTCGGTCTGATCCCGCCAGCCTCCAACCGCGACGAGTTTGACCCCCGGTGGTATTCCCGGTT GAAGGGTGTGCATTGCCAGCTCTTTTGCGTCGGCCCGTGGATGGTTCGCCAAGGAGTGCAGCCGACAAGTTCTCTATCGT TCGGGCTGGCCATTAATCCTTTGCGAAATTATCTCCGGTCAGCTATCGATCAGCGCTTTCCGGAAGGGCCTGAACAGGGC TTCATCAAGGGGATGATGCTCGGCGAGCGGGAGCTGGTGCAGGAGGAGGTGTACGATGCGTTCCGGCGTACCGGTACGGC GCATGTGCTGGTTGTGTCGGGGCTGCACGTGGCGTTGCTGGCCTATGTGGTCAACCTTGCTTTGCAACGCCTGCGGGTGA CGTTGGCGGGCAAATGGCTGTCGCTTTTCATTCTGGTGGTGGTGATTGCGCTGTACTGTTTCGTGACCGGCAATGCGCCC TCGACCAGACGTGCGGCGATTATGGCATCGGTGATTATCGCCGGCGGCACGATCGGGCGCAAAAGCTATCCGTTAAACTC GCTGGCCGCAGCCGATCTCATTATTCTGCTTTTCAATCCTCTCGAACTGCTGAGCCCTGGGTTTCAGATGACCAACGCCG CGGTAGTGGGTATCCTTACCATTTATCCGTGGCTTTCAAGCCTCATTCCGGATGGCGATGGAGTGTTGCGCAAAGTCGCG CATTTCTTCTGGAGCGCATTCAGCGTGAGCCTGGCGGCGATGATCGGCATTGCTCCGGTGATTGCGTGGTATTTCGGCAC CTACGCACCTTCGGGCATTATCGCCAATGTGCCGGTTGTGTTCTTTTCAAGCATGGCCATGTACGCCTCGTTTCCGATGG CGCTTTTGCACGGTTTTGGTGGTGGTGTGGCGGAGCTTTTCGGACTCAGTTCGTGGCTGTTTGCCAATGTCGCGCTTTGG TTTGTGGAGCTGTTCAACCGCCTGCCGTTTGCCAGCATCGAGGTTCACCCCGATCTGTTCGGGGTGGTAGTGTTCTATCT GACAGTCGTGTTGGCGTTGTATGCGCTTGTCTCAAAAGCTTGGGGGCGGTTGGCTGTTTCCGTTCTGATCGGTTTGAACC TGTTGCTCTGGCATGAGGTGATTCGCCCGGTTCCCGATTCCCCAAGAATGGTGACGGTCAATGCTGGACGGGATATGGCG CTTCTGCTTTCGTCAGGGAGCGAAACCCTGCTGGTTGAGGATGGGCGACGTCCGATGGATCGGGAGCGCATCAAGCGACA GTCGAGCCTCTGGGGACTTGCGGAGCCGGTGGCTTCGGTGGGAATGTTTTCGGCAGATTTGGATGAGCAGCTCCAGCCTG TCAGCGCTGGACTTCTTTCAGCGTCACGGCAGTTCGTCGTCCGTCGTCCGGCTGACCGAGTGCTCAGGATCGACAGCAAG CAGCGTTCGTGGCTGTTCGTATCAGGGCTGAAACGACTTGAACAGACTCCGGCGAATGGGGGGAATGTGGTACTCTGGAT CGGCCGCTTTACTGAAAAGGAGTGGTCGCGACTTGAATCGTGGGTTGCTTCGGTTCATCCTCAGCGGATGCTGCTCGTGC CTGGTGTTGCGATGCCGCACGTTCAGCGCGGTTTGCTGGAGCGGTTCGCGATGCAACATCCGGTGGTTGAGGTGCGGTCG AAAAGCGGGCAGACGGTGTGGTACTGA
Upstream 100 bases:
>100_bases AGCATCCGGGTGTTTTGTTTGGCTGGTTAACGGGAAATGACCTGAATATACTAAATTATCCTGTTGCTTAAATCCTGAAA TAACCGCCATAACCCCTAGT
Downstream 100 bases:
>100_bases GGGGGGGGAAGGGCAGCCGCAAGGGACTGCCCCTACAGATTTTCCAGGACATCCCCATAGGGGTACAGCCTTCGCGGCAG CCCCTTTCCCTACCTGTTCC
Product: ComEC/Rec2-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 728; Mature: 728
Protein sequence:
>728_residues MKRFFLPAHPALRLLACAVFGILAAIALPFSPFGWLAVALFACIVTGLLLFVHRKRLLVSKLSALLAVSYLLMVFAGFAF YAAAVFRLVPSPSLLSWVGREVIVSGIVDARPVVNHGKARLRVSAREVFENGRTTRVDEPVTVVIRMSGDQQFRIQQGDF VHVKGSVGLIPPASNRDEFDPRWYSRLKGVHCQLFCVGPWMVRQGVQPTSSLSFGLAINPLRNYLRSAIDQRFPEGPEQG FIKGMMLGERELVQEEVYDAFRRTGTAHVLVVSGLHVALLAYVVNLALQRLRVTLAGKWLSLFILVVVIALYCFVTGNAP STRRAAIMASVIIAGGTIGRKSYPLNSLAAADLIILLFNPLELLSPGFQMTNAAVVGILTIYPWLSSLIPDGDGVLRKVA HFFWSAFSVSLAAMIGIAPVIAWYFGTYAPSGIIANVPVVFFSSMAMYASFPMALLHGFGGGVAELFGLSSWLFANVALW FVELFNRLPFASIEVHPDLFGVVVFYLTVVLALYALVSKAWGRLAVSVLIGLNLLLWHEVIRPVPDSPRMVTVNAGRDMA LLLSSGSETLLVEDGRRPMDRERIKRQSSLWGLAEPVASVGMFSADLDEQLQPVSAGLLSASRQFVVRRPADRVLRIDSK QRSWLFVSGLKRLEQTPANGGNVVLWIGRFTEKEWSRLESWVASVHPQRMLLVPGVAMPHVQRGLLERFAMQHPVVEVRS KSGQTVWY
Sequences:
>Translated_728_residues MKRFFLPAHPALRLLACAVFGILAAIALPFSPFGWLAVALFACIVTGLLLFVHRKRLLVSKLSALLAVSYLLMVFAGFAF YAAAVFRLVPSPSLLSWVGREVIVSGIVDARPVVNHGKARLRVSAREVFENGRTTRVDEPVTVVIRMSGDQQFRIQQGDF VHVKGSVGLIPPASNRDEFDPRWYSRLKGVHCQLFCVGPWMVRQGVQPTSSLSFGLAINPLRNYLRSAIDQRFPEGPEQG FIKGMMLGERELVQEEVYDAFRRTGTAHVLVVSGLHVALLAYVVNLALQRLRVTLAGKWLSLFILVVVIALYCFVTGNAP STRRAAIMASVIIAGGTIGRKSYPLNSLAAADLIILLFNPLELLSPGFQMTNAAVVGILTIYPWLSSLIPDGDGVLRKVA HFFWSAFSVSLAAMIGIAPVIAWYFGTYAPSGIIANVPVVFFSSMAMYASFPMALLHGFGGGVAELFGLSSWLFANVALW FVELFNRLPFASIEVHPDLFGVVVFYLTVVLALYALVSKAWGRLAVSVLIGLNLLLWHEVIRPVPDSPRMVTVNAGRDMA LLLSSGSETLLVEDGRRPMDRERIKRQSSLWGLAEPVASVGMFSADLDEQLQPVSAGLLSASRQFVVRRPADRVLRIDSK QRSWLFVSGLKRLEQTPANGGNVVLWIGRFTEKEWSRLESWVASVHPQRMLLVPGVAMPHVQRGLLERFAMQHPVVEVRS KSGQTVWY >Mature_728_residues MKRFFLPAHPALRLLACAVFGILAAIALPFSPFGWLAVALFACIVTGLLLFVHRKRLLVSKLSALLAVSYLLMVFAGFAF YAAAVFRLVPSPSLLSWVGREVIVSGIVDARPVVNHGKARLRVSAREVFENGRTTRVDEPVTVVIRMSGDQQFRIQQGDF VHVKGSVGLIPPASNRDEFDPRWYSRLKGVHCQLFCVGPWMVRQGVQPTSSLSFGLAINPLRNYLRSAIDQRFPEGPEQG FIKGMMLGERELVQEEVYDAFRRTGTAHVLVVSGLHVALLAYVVNLALQRLRVTLAGKWLSLFILVVVIALYCFVTGNAP STRRAAIMASVIIAGGTIGRKSYPLNSLAAADLIILLFNPLELLSPGFQMTNAAVVGILTIYPWLSSLIPDGDGVLRKVA HFFWSAFSVSLAAMIGIAPVIAWYFGTYAPSGIIANVPVVFFSSMAMYASFPMALLHGFGGGVAELFGLSSWLFANVALW FVELFNRLPFASIEVHPDLFGVVVFYLTVVLALYALVSKAWGRLAVSVLIGLNLLLWHEVIRPVPDSPRMVTVNAGRDMA LLLSSGSETLLVEDGRRPMDRERIKRQSSLWGLAEPVASVGMFSADLDEQLQPVSAGLLSASRQFVVRRPADRVLRIDSK QRSWLFVSGLKRLEQTPANGGNVVLWIGRFTEKEWSRLESWVASVHPQRMLLVPGVAMPHVQRGLLERFAMQHPVVEVRS KSGQTVWY
Specific function: The comE operon is required for the binding and uptake of transforming DNA. ComEC is required for internalization but is dispensable for DNA binding [H]
COG id: COG0658
COG function: function code R; Predicted membrane metal-binding protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: To H.influenzae REC2, N.gonorrhoeae ComA and E.coli YcaI [H]
Homologues:
Organism=Escherichia coli, GI87081801, Length=488, Percent_Identity=23.5655737704918, Blast_Score=83, Evalue=5e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001279 - InterPro: IPR004477 - InterPro: IPR004797 [H]
Pfam domain/function: PF03772 Competence; PF00753 Lactamase_B [H]
EC number: NA
Molecular weight: Translated: 80276; Mature: 80276
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRFFLPAHPALRLLACAVFGILAAIALPFSPFGWLAVALFACIVTGLLLFVHRKRLLVS CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLSALLAVSYLLMVFAGFAFYAAAVFRLVPSPSLLSWVGREVIVSGIVDARPVVNHGKAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCHH LRVSAREVFENGRTTRVDEPVTVVIRMSGDQQFRIQQGDFVHVKGSVGLIPPASNRDEFD EEHHHHHHHHCCCCEECCCCEEEEEEECCCCEEEEECCCEEEEECCEECCCCCCCCCCCC PRWYSRLKGVHCQLFCVGPWMVRQGVQPTSSLSFGLAINPLRNYLRSAIDQRFPEGPEQG HHHHHHHCCCEEEEEEECHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCHH FIKGMMLGERELVQEEVYDAFRRTGTAHVLVVSGLHVALLAYVVNLALQRLRVTLAGKWL HHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLFILVVVIALYCFVTGNAPSTRRAAIMASVIIAGGTIGRKSYPLNSLAAADLIILLFNP HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC LELLSPGFQMTNAAVVGILTIYPWLSSLIPDGDGVLRKVAHFFWSAFSVSLAAMIGIAPV HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAWYFGTYAPSGIIANVPVVFFSSMAMYASFPMALLHGFGGGVAELFGLSSWLFANVALW HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH FVELFNRLPFASIEVHPDLFGVVVFYLTVVLALYALVSKAWGRLAVSVLIGLNLLLWHEV HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IRPVPDSPRMVTVNAGRDMALLLSSGSETLLVEDGRRPMDRERIKRQSSLWGLAEPVASV HCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH GMFSADLDEQLQPVSAGLLSASRQFVVRRPADRVLRIDSKQRSWLFVSGLKRLEQTPANG HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCHHHHHHHHHHHCCCCC GNVVLWIGRFTEKEWSRLESWVASVHPQRMLLVPGVAMPHVQRGLLERFAMQHPVVEVRS CCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHC KSGQTVWY CCCCCCCC >Mature Secondary Structure MKRFFLPAHPALRLLACAVFGILAAIALPFSPFGWLAVALFACIVTGLLLFVHRKRLLVS CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLSALLAVSYLLMVFAGFAFYAAAVFRLVPSPSLLSWVGREVIVSGIVDARPVVNHGKAR HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCHH LRVSAREVFENGRTTRVDEPVTVVIRMSGDQQFRIQQGDFVHVKGSVGLIPPASNRDEFD EEHHHHHHHHCCCCEECCCCEEEEEEECCCCEEEEECCCEEEEECCEECCCCCCCCCCCC PRWYSRLKGVHCQLFCVGPWMVRQGVQPTSSLSFGLAINPLRNYLRSAIDQRFPEGPEQG HHHHHHHCCCEEEEEEECHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCCCHH FIKGMMLGERELVQEEVYDAFRRTGTAHVLVVSGLHVALLAYVVNLALQRLRVTLAGKWL HHHHHHHCHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH SLFILVVVIALYCFVTGNAPSTRRAAIMASVIIAGGTIGRKSYPLNSLAAADLIILLFNP HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC LELLSPGFQMTNAAVVGILTIYPWLSSLIPDGDGVLRKVAHFFWSAFSVSLAAMIGIAPV HHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH IAWYFGTYAPSGIIANVPVVFFSSMAMYASFPMALLHGFGGGVAELFGLSSWLFANVALW HHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH FVELFNRLPFASIEVHPDLFGVVVFYLTVVLALYALVSKAWGRLAVSVLIGLNLLLWHEV HHHHHHHCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IRPVPDSPRMVTVNAGRDMALLLSSGSETLLVEDGRRPMDRERIKRQSSLWGLAEPVASV HCCCCCCCCEEEEECCCCEEEEEECCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH GMFSADLDEQLQPVSAGLLSASRQFVVRRPADRVLRIDSKQRSWLFVSGLKRLEQTPANG HHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCHHHHHHHHHHHCCCCC GNVVLWIGRFTEKEWSRLESWVASVHPQRMLLVPGVAMPHVQRGLLERFAMQHPVVEVRS CCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHC KSGQTVWY CCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7968523; 8969508; 9384377 [H]