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The map label for this gene is 193212442

Identifier: 193212442

GI number: 193212442

Start: 842772

End: 843197

Strand: Direct

Name: 193212442

Synonym: Cpar_0779

Alternate gene names: NA

Gene position: 842772-843197 (Clockwise)

Preceding gene: 193212441

Following gene: 193212443

Centisome position: 36.81

GC content: 55.16

Gene sequence:

>426_bases
ATGCCGCTGCAAATTTTCAACACCACGAAACGCACGATTGACGAAGCGCTCCTCGCCGAAGCCATCCAACTGGTGATCGG
CGAAGAGGGTGGCAAGGTCGGTTCCATCGAAGCTATCTACTGCGGCAATAAAATGATCCGTCGCATCAACCGCGACTTTC
TCAACCACGACTACGCCACCGACACCATCACCTTCGGCTACAACGAAGGCGGGGAGGTGGAAGGGGAGTTTTACATCTCC
CTCGACGTCATTGAGTCCAACGCTCGCCGCTTTGGCGTCATGTTTGAGGATGAATTGCTTCGCGTCACCATCCACTCCGC
TCTGCACCTCATGGGCTACGACGACGAAACCCCCGAGCTTCGAATCGCAATGAGTCGCCGGGAGGATTTGTATCTGGACC
GAATTCGCGGAGCATCGAATCATTGA

Upstream 100 bases:

>100_bases
AAAAAGCACGTCGATGAGGATGTGCTGCTCACCATCCGCGTGCACCGCAACAACCTCAAACAGATCGACGCCATGCTCAA
GGCGTCCGCATTGAAAAACC

Downstream 100 bases:

>100_bases
CGGTAATCCGTTCATCCAAATCCAGATCGAAATCGTTATCGAATGTCGTCGTTTTAATCCTTTCATTCCTGTCATACGAT
TTTGCGGTCAGGTAGCTCGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 140

Protein sequence:

>141_residues
MPLQIFNTTKRTIDEALLAEAIQLVIGEEGGKVGSIEAIYCGNKMIRRINRDFLNHDYATDTITFGYNEGGEVEGEFYIS
LDVIESNARRFGVMFEDELLRVTIHSALHLMGYDDETPELRIAMSRREDLYLDRIRGASNH

Sequences:

>Translated_141_residues
MPLQIFNTTKRTIDEALLAEAIQLVIGEEGGKVGSIEAIYCGNKMIRRINRDFLNHDYATDTITFGYNEGGEVEGEFYIS
LDVIESNARRFGVMFEDELLRVTIHSALHLMGYDDETPELRIAMSRREDLYLDRIRGASNH
>Mature_140_residues
PLQIFNTTKRTIDEALLAEAIQLVIGEEGGKVGSIEAIYCGNKMIRRINRDFLNHDYATDTITFGYNEGGEVEGEFYISL
DVIESNARRFGVMFEDELLRVTIHSALHLMGYDDETPELRIAMSRREDLYLDRIRGASNH

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_CHLP8 (B3QMP2)

Other databases:

- EMBL:   CP001099
- RefSeq:   YP_001998395.1
- GeneID:   6419706
- GenomeReviews:   CP001099_GR
- KEGG:   cpc:Cpar_0779
- HOGENOM:   HBG734136
- OMA:   IDGEFYI
- ProtClustDB:   CLSK637735
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 16089; Mature: 15958

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLQIFNTTKRTIDEALLAEAIQLVIGEEGGKVGSIEAIYCGNKMIRRINRDFLNHDYAT
CCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCC
DTITFGYNEGGEVEGEFYISLDVIESNARRFGVMFEDELLRVTIHSALHLMGYDDETPEL
CEEEECCCCCCCCCCEEEEEEEEEECCCCEECEEEHHHHHHHHHHHHHHCCCCCCCCCCE
RIAMSRREDLYLDRIRGASNH
EEEECCCCHHHHHHHCCCCCC
>Mature Secondary Structure 
PLQIFNTTKRTIDEALLAEAIQLVIGEEGGKVGSIEAIYCGNKMIRRINRDFLNHDYAT
CEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCC
DTITFGYNEGGEVEGEFYISLDVIESNARRFGVMFEDELLRVTIHSALHLMGYDDETPEL
CEEEECCCCCCCCCCEEEEEEEEEECCCCEECEEEHHHHHHHHHHHHHHCCCCCCCCCCE
RIAMSRREDLYLDRIRGASNH
EEEECCCCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA