Click here to switch to the map view.

The map label for this gene is 193212161

Identifier: 193212161

GI number: 193212161

Start: 524760

End: 525197

Strand: Direct

Name: 193212161

Synonym: Cpar_0492

Alternate gene names: NA

Gene position: 524760-525197 (Clockwise)

Preceding gene: 193212160

Following gene: 193212162

Centisome position: 22.92

GC content: 59.82

Gene sequence:

>438_bases
ATGCTGAAGGATGCGCTCGGTGCATGGCGTGGCTCTGAGGAGGAGATCAGCCGCCTGATCGAAGCCGACCCGCTCAACGC
CGATGCCTGGTGCAGCCGCGCCGGAGTCAGGAGCGCCGCTGGTGACCTGGCGGGTGCGCTGGACGACCTGACGATGGCCA
TCAAGCTCGGTCTGCGCTATCGGGAGCGGATTGTGGCCTGGGGTAATCGTGGGATGATTCGTTACGAAACCGGCGACTAC
GAAGGGGCGGTCGAGGATTTCAGCGCCGTCATCGAAGCGCGTCCCCGCAAATCCATCATGAAGGCAGCTCTCATGCAGAG
GGCGCTTGCAAAACAGAAGCTTGGTGATATGAACGGAGCCTCAGCTGACAGGCAGTTGGCCCGCATTCTGTCACCGGAGT
TGAACAAACAACAGAACCAAAAGGAGAACATAGCATGA

Upstream 100 bases:

>100_bases
TGGTGATGCAGGCGCTTGAAAAGGCAAGCCGCACGGTGCCGGTCAAACGTATTGTCGTCAGCGTGACCGGCAAGGTGCTG
GCCGAGGAGGAGATTGTTTC

Downstream 100 bases:

>100_bases
CTATGCATTGCGATCAATGTCAGGAGAGTATCAAGGGGACGGGTTGTTTCGTTCGTGGCGTGTGCGGCAAGGATGAGAGG
ACCGCGGCGCTTCAGGATGT

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MLKDALGAWRGSEEEISRLIEADPLNADAWCSRAGVRSAAGDLAGALDDLTMAIKLGLRYRERIVAWGNRGMIRYETGDY
EGAVEDFSAVIEARPRKSIMKAALMQRALAKQKLGDMNGASADRQLARILSPELNKQQNQKENIA

Sequences:

>Translated_145_residues
MLKDALGAWRGSEEEISRLIEADPLNADAWCSRAGVRSAAGDLAGALDDLTMAIKLGLRYRERIVAWGNRGMIRYETGDY
EGAVEDFSAVIEARPRKSIMKAALMQRALAKQKLGDMNGASADRQLARILSPELNKQQNQKENIA
>Mature_145_residues
MLKDALGAWRGSEEEISRLIEADPLNADAWCSRAGVRSAAGDLAGALDDLTMAIKLGLRYRERIVAWGNRGMIRYETGDY
EGAVEDFSAVIEARPRKSIMKAALMQRALAKQKLGDMNGASADRQLARILSPELNKQQNQKENIA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15962; Mature: 15962

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: PS50005 TPR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKDALGAWRGSEEEISRLIEADPLNADAWCSRAGVRSAAGDLAGALDDLTMAIKLGLRY
CCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RERIVAWGNRGMIRYETGDYEGAVEDFSAVIEARPRKSIMKAALMQRALAKQKLGDMNGA
HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
SADRQLARILSPELNKQQNQKENIA
HHHHHHHHHHCHHHCHHHHHHCCCC
>Mature Secondary Structure
MLKDALGAWRGSEEEISRLIEADPLNADAWCSRAGVRSAAGDLAGALDDLTMAIKLGLRY
CCCCHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RERIVAWGNRGMIRYETGDYEGAVEDFSAVIEARPRKSIMKAALMQRALAKQKLGDMNGA
HHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
SADRQLARILSPELNKQQNQKENIA
HHHHHHHHHHCHHHCHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA