| Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
|---|---|
| Accession | NC_011027 |
| Length | 2,289,249 |
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The map label for this gene is 193212062
Identifier: 193212062
GI number: 193212062
Start: 418010
End: 419248
Strand: Direct
Name: 193212062
Synonym: Cpar_0392
Alternate gene names: NA
Gene position: 418010-419248 (Clockwise)
Preceding gene: 193212061
Following gene: 193212063
Centisome position: 18.26
GC content: 60.94
Gene sequence:
>1239_bases ATGCAAATCATCGTCTTTGAAGATCAGGCCGTGTTGCGGTTTTCACCGCTTGTTGACCTGAAACCGGTTTATGATCTGGT CACCGGTTGCCATTCTCTCCGCCAGCGCTTTGTCGCGAACCTTTCCGCATCGCACAACCTGAGCTGGCATCTTCGCCGCC GTTGCGCTGCGTGGTTCAGCGAGGCCAATCCCGGCGCGGTGGTCAATCGCGTGACTGAGGATGACGTGCTGCTTGTCAAC GGGCGGCTCATCTGCGATGCGGCGGTGATGCAGTTCATCAACTCGGGTCGGATCGAGCCGGGCGAGGCCGTTATCCAGAA CGGCAACCTCCTGTTCTGCCGCACCACGGCGGAGCCGCTTCCTTTTGCGGGAACGGTGTTTCCGGATACCATCAATGGCA TGGTGCTGGCCGGTGCGTTCTCCTGCGTCGAAGTTTCCGGGTTCCGGTTGATCGAAAACCTCTGGGAGCCCGTGGCGATG CACCCGGAGATGATGCAGCTTGATGGCGAGTCGCTCGATCTCGGGCGCATCGAAGGCGAGGTGCACCCTTCGGCGATTCT GGTCAATCCGTCTGCGATCACTGTCGAAAAGGGGGCGGAGGTCAAGGCTGGCGCGGTGCTCGACGCCAGCGACGGGTTCA TTTACATCGGCGCGGGTGCGTTGGTGGAGCCGATGGCGCTCTTGATGCAGAACGTGTATATCGCGCCGGGCGCGCGGGTC AAGAGTGGCGCGCGGATTTACAGCAACGTCTGCATCGGCAGCGGGGCGAAGGCGGGCGGCGAGATCGAGGATTCGATCAT GGAGCCCTTCTCCAACAAGCAGCACGACGGCTTCCTCGGCCACTCCTACATCTCAAGCTGGTGCAACCTCGGCGCGGGCA CCGACACCTCCGACCTCAAGAACAACTACAGCGCAGTCTCCATCGATACCGGACGCGGCCCGGTCAAAACTGGTCAGCAA TTTCTCGGCCTGCTGATGGCCGAACATGCCAAATGCTCCATCGGCACCCGCTTCAACACCGGCACGGTCGTTGGCACCTC GTCGAACGTCTTCGGCGACGGAATGCCCGCCAAGCACATATCCTCATTCTGCTGGGGCGACGGCAAATCCGACTCCGAAG CCTATGAAATCGGCAAAGCCGTCGAGACTGCAAGAAAAGTCATGGCTCGCCGCAAGGTTGAGATGAGCGCCGCCTACGAG GCGATGTTTTGTACCGCAGCGCAGCAGAGTGGGCGGTAG
Upstream 100 bases:
>100_bases CGATGGCGAGGTGATGGGTCGGGTCGGTGGCAGGATCGGTATCCACGCCGTACCGCGCGCGGTTGAATTGCTTTATGACT CATAACCAGTTGCCCCCCTC
Downstream 100 bases:
>100_bases GTTTTCATGCTCGCAGGTGAGAGTTTAGAGGCCTGGATTTGTAAGGGCGCACGCCATGCGCCCGTGTGTGCCGGAGCGCT TTGCAGCAAAAAGACAATTG
Product: hypothetical protein
Products: NA
Alternate protein names: Glucose-1-Phosphate Thymidylyltransferase; Sugar Phosphate Nucleotydyl Transferase; Nucleotidyl Transferase; Transferase Hexapeptide Repeat; Transferase Hexapeptide Repeat Containing Protein; Sugar-1-Phosphate Guanyl Transferase; Hexapeptide Transferase Family Protein; Hexapeptide Repeat-Containing Protein
Number of amino acids: Translated: 412; Mature: 412
Protein sequence:
>412_residues MQIIVFEDQAVLRFSPLVDLKPVYDLVTGCHSLRQRFVANLSASHNLSWHLRRRCAAWFSEANPGAVVNRVTEDDVLLVN GRLICDAAVMQFINSGRIEPGEAVIQNGNLLFCRTTAEPLPFAGTVFPDTINGMVLAGAFSCVEVSGFRLIENLWEPVAM HPEMMQLDGESLDLGRIEGEVHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGALVEPMALLMQNVYIAPGARV KSGARIYSNVCIGSGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLKNNYSAVSIDTGRGPVKTGQQ FLGLLMAEHAKCSIGTRFNTGTVVGTSSNVFGDGMPAKHISSFCWGDGKSDSEAYEIGKAVETARKVMARRKVEMSAAYE AMFCTAAQQSGR
Sequences:
>Translated_412_residues MQIIVFEDQAVLRFSPLVDLKPVYDLVTGCHSLRQRFVANLSASHNLSWHLRRRCAAWFSEANPGAVVNRVTEDDVLLVN GRLICDAAVMQFINSGRIEPGEAVIQNGNLLFCRTTAEPLPFAGTVFPDTINGMVLAGAFSCVEVSGFRLIENLWEPVAM HPEMMQLDGESLDLGRIEGEVHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGALVEPMALLMQNVYIAPGARV KSGARIYSNVCIGSGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLKNNYSAVSIDTGRGPVKTGQQ FLGLLMAEHAKCSIGTRFNTGTVVGTSSNVFGDGMPAKHISSFCWGDGKSDSEAYEIGKAVETARKVMARRKVEMSAAYE AMFCTAAQQSGR >Mature_412_residues MQIIVFEDQAVLRFSPLVDLKPVYDLVTGCHSLRQRFVANLSASHNLSWHLRRRCAAWFSEANPGAVVNRVTEDDVLLVN GRLICDAAVMQFINSGRIEPGEAVIQNGNLLFCRTTAEPLPFAGTVFPDTINGMVLAGAFSCVEVSGFRLIENLWEPVAM HPEMMQLDGESLDLGRIEGEVHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGALVEPMALLMQNVYIAPGARV KSGARIYSNVCIGSGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLKNNYSAVSIDTGRGPVKTGQQ FLGLLMAEHAKCSIGTRFNTGTVVGTSSNVFGDGMPAKHISSFCWGDGKSDSEAYEIGKAVETARKVMARRKVEMSAAYE AMFCTAAQQSGR
Specific function: Unknown
COG id: COG1208
COG function: function code MJ; Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon)
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44167; Mature: 44167
Theoretical pI: Translated: 5.42; Mature: 5.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.4 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 2.4 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIIVFEDQAVLRFSPLVDLKPVYDLVTGCHSLRQRFVANLSASHNLSWHLRRRCAAWFS CEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC EANPGAVVNRVTEDDVLLVNGRLICDAAVMQFINSGRIEPGEAVIQNGNLLFCRTTAEPL CCCCCCEEEECCCCCEEEECCEEEHHHHHHHHHHCCCCCCCHHEEECCCEEEEEECCCCC PFAGTVFPDTINGMVLAGAFSCVEVSGFRLIENLWEPVAMHPEMMQLDGESLDLGRIEGE CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEECCCC VHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGALVEPMALLMQNVYIAPGARV CCCCEEEECCCEEEEECCCCEECCEEEECCCCEEEEECCHHHHHHHHHHHCEEECCCCCC KSGARIYSNVCIGSGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLK CCCCHHHHHEEECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHH NNYSAVSIDTGRGPVKTGQQFLGLLMAEHAKCSIGTRFNTGTVVGTSSNVFGDGMPAKHI CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCEEEECCCCCCCCCCCHHHH SSFCWGDGKSDSEAYEIGKAVETARKVMARRKVEMSAAYEAMFCTAAQQSGR HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQIIVFEDQAVLRFSPLVDLKPVYDLVTGCHSLRQRFVANLSASHNLSWHLRRRCAAWFS CEEEEECCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC EANPGAVVNRVTEDDVLLVNGRLICDAAVMQFINSGRIEPGEAVIQNGNLLFCRTTAEPL CCCCCCEEEECCCCCEEEECCEEEHHHHHHHHHHCCCCCCCHHEEECCCEEEEEECCCCC PFAGTVFPDTINGMVLAGAFSCVEVSGFRLIENLWEPVAMHPEMMQLDGESLDLGRIEGE CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCEECCCC VHPSAILVNPSAITVEKGAEVKAGAVLDASDGFIYIGAGALVEPMALLMQNVYIAPGARV CCCCEEEECCCEEEEECCCCEECCEEEECCCCEEEEECCHHHHHHHHHHHCEEECCCCCC KSGARIYSNVCIGSGAKAGGEIEDSIMEPFSNKQHDGFLGHSYISSWCNLGAGTDTSDLK CCCCHHHHHEEECCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHH NNYSAVSIDTGRGPVKTGQQFLGLLMAEHAKCSIGTRFNTGTVVGTSSNVFGDGMPAKHI CCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEECCCEEEECCCCCCCCCCCHHHH SSFCWGDGKSDSEAYEIGKAVETARKVMARRKVEMSAAYEAMFCTAAQQSGR HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA