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The map label for this gene is ycbB [H]

Identifier: 193212014

GI number: 193212014

Start: 363761

End: 365512

Strand: Direct

Name: ycbB [H]

Synonym: Cpar_0343

Alternate gene names: 193212014

Gene position: 363761-365512 (Clockwise)

Preceding gene: 193212013

Following gene: 193212015

Centisome position: 15.89

GC content: 55.71

Gene sequence:

>1752_bases
ATGCGTTCGATTGTGCGGTTCTGGCTTGTAGTTTTTTCGTTTCTGCATGTGGCAACTCCCGCCGCGCTCCATGCTGCCGA
AAATGATAACGAGGCTGCTGCTCCCCGACTGACGATCGTCGGAGAGCAACTGAAAGAGTCGCTGGATCGCCTCCAGCGTT
CAGCCGGCTCCATCTCTCCTGCAAGGTCTGTGATTGTCGGGCAGATGCAGCGCTTTTACGATTCTTTGGAGTATCGCATT
GCCTGGACCAATCGCAAGGCCATAGCTCGCCTTATCGAGGTGATCCGGCAGAGTGCTGACGACGGCCTCGATCCTTCGGA
CTATCATCTCGAAGAGATCAGGGCGGCGTATGACAATCCTCCGACCTCCCCGGCCCTGCAGGTTCGCGCCGATCTTTTGA
TGACCGATGGCCTTTTCACGCTGCTTTCGCATATGCGCGCGGGCAAGGTGGTGCCCAAGTCGCTGGATTCGAACTGGAAT
CTGCCGCTCTCCGGGCCGGCCAAGAACAGCGACGACATGCTGAAGTCAGCCGTGATGGACGCAAAATTTCCCGAGATGAT
CGCCTCCCTTCGGCCATCCACGCCGGAGTACAGGCTGTTGCGCAAAGGCCTTGCGAAGTATCGCAAGGTTGCAGCCGCCG
GTGGATGGAAGCCGGTGCCTGCCGGGCCGAGAATCGGAGATGTCGGCCAGATCGATGAGCGTATGCCGCTCATTCGCAAG
CGCCTTGTCGTGACGGGTGATCTTATCGAAGATGGGCTGACGATAAGCGCACCAGCGAATTCTGCTGACTCCACGGCTGC
CCGTCAAGCCTTCGTCTATACTGCCGAGCTCTTCGATGCGGTGAAAGCTTTTCAGGAAAGGCACGGGCTTGAAGTGGATG
GCATTATCGGCACCGAAACCGCCGGAGCGATGGCTGTGCCGGTAGAGGAGTGGATCGACCAGATCCGGATCAATCTCGAA
CGCTATCGCTGGTATTCAAGTTCATTGGGCTCGACCTATGTGATGGTCAATATTCCATCATTTTCAGTCGAGTTTGTGCG
TGACGACTCTGTCCGCTGGAAATCGCGGGTCATTGTCGGCAAGCCGAACCTGCAAACTCCCGTTTTCAAGGCTGAGATTC
AGTCGGTGATTTTCAATCCGCGCTGGGTTATTCCTTCCGGCATTCTGGCCAAAGAGGCTTTGCCCGCCATCAAAAAGAAT
CTCGACTACCTGAGCAGGCACCAGTTGACTGTTGTGAACAACCAGGGTAAGCCGGTTGATCCTTCGAGCGTGAATTGGGC
TGCCTATCAGGGACGCGGATTTCCTTATCGACTGGTTCAGGCTTCTGGCGACGATGGCGCTCTCGGCAGGATCAAGTTCA
ATATGCCGAACCGTTTTACGGTCTACATGCACGACACTCCCACCAAGCCTCTGTTTGAGCGTAGCTACCGCGCGTTCAGT
CACGGCTGCGTCAGGGTGCAAAACCCGAACGAACTTGGCGTGCTTCTTTTTAACGACCCGGTCAAGTGGGACATGAACAG
GATCGAGGCGATGATCGATACCGGCAAGACCCGCACCATCAATCTTCCGGAGAGAATTCCGGTCTATTTCATGTATCAGA
CCGCATTCCCGGATGGTGACAACATTGATTTCCGGTATGACGTCTATGACCGCGATCCCGACCTGCAAAAGGCGCTCGAC
AGCACCAGAGAGCGTGTGATCGTCGAAGAGGCTCTTCGTCCCGTAATGTCTTCTGTGGTGACTAAGCCATAA

Upstream 100 bases:

>100_bases
GACGGCAGGGATTACGCTTCCCGCTCGGCCGTGCTCAATCCTGAGATGGCTTCGAGAATCGCTCAGAGCGATAACCCTGC
ATAACCCCTACCCTTTGCCT

Downstream 100 bases:

>100_bases
GGGTGGCCCATGTCCTTCACGGTCACTCTCGACGTCTCGAAATCGTTCGAGACGTCTGCCCAGCCCGATAAAGTCTTCGA
ACTGCTTGCCGACGTCCCCC

Product: peptidoglycan-binding domain 1 protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MRSIVRFWLVVFSFLHVATPAALHAAENDNEAAAPRLTIVGEQLKESLDRLQRSAGSISPARSVIVGQMQRFYDSLEYRI
AWTNRKAIARLIEVIRQSADDGLDPSDYHLEEIRAAYDNPPTSPALQVRADLLMTDGLFTLLSHMRAGKVVPKSLDSNWN
LPLSGPAKNSDDMLKSAVMDAKFPEMIASLRPSTPEYRLLRKGLAKYRKVAAAGGWKPVPAGPRIGDVGQIDERMPLIRK
RLVVTGDLIEDGLTISAPANSADSTAARQAFVYTAELFDAVKAFQERHGLEVDGIIGTETAGAMAVPVEEWIDQIRINLE
RYRWYSSSLGSTYVMVNIPSFSVEFVRDDSVRWKSRVIVGKPNLQTPVFKAEIQSVIFNPRWVIPSGILAKEALPAIKKN
LDYLSRHQLTVVNNQGKPVDPSSVNWAAYQGRGFPYRLVQASGDDGALGRIKFNMPNRFTVYMHDTPTKPLFERSYRAFS
HGCVRVQNPNELGVLLFNDPVKWDMNRIEAMIDTGKTRTINLPERIPVYFMYQTAFPDGDNIDFRYDVYDRDPDLQKALD
STRERVIVEEALRPVMSSVVTKP

Sequences:

>Translated_583_residues
MRSIVRFWLVVFSFLHVATPAALHAAENDNEAAAPRLTIVGEQLKESLDRLQRSAGSISPARSVIVGQMQRFYDSLEYRI
AWTNRKAIARLIEVIRQSADDGLDPSDYHLEEIRAAYDNPPTSPALQVRADLLMTDGLFTLLSHMRAGKVVPKSLDSNWN
LPLSGPAKNSDDMLKSAVMDAKFPEMIASLRPSTPEYRLLRKGLAKYRKVAAAGGWKPVPAGPRIGDVGQIDERMPLIRK
RLVVTGDLIEDGLTISAPANSADSTAARQAFVYTAELFDAVKAFQERHGLEVDGIIGTETAGAMAVPVEEWIDQIRINLE
RYRWYSSSLGSTYVMVNIPSFSVEFVRDDSVRWKSRVIVGKPNLQTPVFKAEIQSVIFNPRWVIPSGILAKEALPAIKKN
LDYLSRHQLTVVNNQGKPVDPSSVNWAAYQGRGFPYRLVQASGDDGALGRIKFNMPNRFTVYMHDTPTKPLFERSYRAFS
HGCVRVQNPNELGVLLFNDPVKWDMNRIEAMIDTGKTRTINLPERIPVYFMYQTAFPDGDNIDFRYDVYDRDPDLQKALD
STRERVIVEEALRPVMSSVVTKP
>Mature_583_residues
MRSIVRFWLVVFSFLHVATPAALHAAENDNEAAAPRLTIVGEQLKESLDRLQRSAGSISPARSVIVGQMQRFYDSLEYRI
AWTNRKAIARLIEVIRQSADDGLDPSDYHLEEIRAAYDNPPTSPALQVRADLLMTDGLFTLLSHMRAGKVVPKSLDSNWN
LPLSGPAKNSDDMLKSAVMDAKFPEMIASLRPSTPEYRLLRKGLAKYRKVAAAGGWKPVPAGPRIGDVGQIDERMPLIRK
RLVVTGDLIEDGLTISAPANSADSTAARQAFVYTAELFDAVKAFQERHGLEVDGIIGTETAGAMAVPVEEWIDQIRINLE
RYRWYSSSLGSTYVMVNIPSFSVEFVRDDSVRWKSRVIVGKPNLQTPVFKAEIQSVIFNPRWVIPSGILAKEALPAIKKN
LDYLSRHQLTVVNNQGKPVDPSSVNWAAYQGRGFPYRLVQASGDDGALGRIKFNMPNRFTVYMHDTPTKPLFERSYRAFS
HGCVRVQNPNELGVLLFNDPVKWDMNRIEAMIDTGKTRTINLPERIPVYFMYQTAFPDGDNIDFRYDVYDRDPDLQKALD
STRERVIVEEALRPVMSSVVTKP

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG2989

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YkuD family [H]

Homologues:

Organism=Escherichia coli, GI1787155, Length=529, Percent_Identity=29.8676748582231, Blast_Score=215, Evalue=7e-57,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002477
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01471 PG_binding_1; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 65441; Mature: 65441

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS00455 AMP_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRSIVRFWLVVFSFLHVATPAALHAAENDNEAAAPRLTIVGEQLKESLDRLQRSAGSISP
CHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCH
ARSVIVGQMQRFYDSLEYRIAWTNRKAIARLIEVIRQSADDGLDPSDYHLEEIRAAYDNP
HHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
PTSPALQVRADLLMTDGLFTLLSHMRAGKVVPKSLDSNWNLPLSGPAKNSDDMLKSAVMD
CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
AKFPEMIASLRPSTPEYRLLRKGLAKYRKVAAAGGWKPVPAGPRIGDVGQIDERMPLIRK
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RLVVTGDLIEDGLTISAPANSADSTAARQAFVYTAELFDAVKAFQERHGLEVDGIIGTET
HHHHCCHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEECCCC
AGAMAVPVEEWIDQIRINLERYRWYSSSLGSTYVMVNIPSFSVEFVRDDSVRWKSRVIVG
CCEEECCHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEEE
KPNLQTPVFKAEIQSVIFNPRWVIPSGILAKEALPAIKKNLDYLSRHQLTVVNNQGKPVD
CCCCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
PSSVNWAAYQGRGFPYRLVQASGDDGALGRIKFNMPNRFTVYMHDTPTKPLFERSYRAFS
CCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHH
HGCVRVQNPNELGVLLFNDPVKWDMNRIEAMIDTGKTRTINLPERIPVYFMYQTAFPDGD
CCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCC
NIDFRYDVYDRDPDLQKALDSTRERVIVEEALRPVMSSVVTKP
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRSIVRFWLVVFSFLHVATPAALHAAENDNEAAAPRLTIVGEQLKESLDRLQRSAGSISP
CHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCCH
ARSVIVGQMQRFYDSLEYRIAWTNRKAIARLIEVIRQSADDGLDPSDYHLEEIRAAYDNP
HHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCC
PTSPALQVRADLLMTDGLFTLLSHMRAGKVVPKSLDSNWNLPLSGPAKNSDDMLKSAVMD
CCCCHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHC
AKFPEMIASLRPSTPEYRLLRKGLAKYRKVAAAGGWKPVPAGPRIGDVGQIDERMPLIRK
CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHH
RLVVTGDLIEDGLTISAPANSADSTAARQAFVYTAELFDAVKAFQERHGLEVDGIIGTET
HHHHCCHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCEECCCC
AGAMAVPVEEWIDQIRINLERYRWYSSSLGSTYVMVNIPSFSVEFVRDDSVRWKSRVIVG
CCEEECCHHHHHHHHHHHHHHHEEECCCCCCEEEEEECCCCEEEEEECCCCEEEEEEEEE
KPNLQTPVFKAEIQSVIFNPRWVIPSGILAKEALPAIKKNLDYLSRHQLTVVNNQGKPVD
CCCCCCCHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCC
PSSVNWAAYQGRGFPYRLVQASGDDGALGRIKFNMPNRFTVYMHDTPTKPLFERSYRAFS
CCCCCEEEECCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEEECCCCCHHHHHHHHHHH
HGCVRVQNPNELGVLLFNDPVKWDMNRIEAMIDTGKTRTINLPERIPVYFMYQTAFPDGD
CCEEEECCCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEECCCCCCCEEEEEEECCCCCC
NIDFRYDVYDRDPDLQKALDSTRERVIVEEALRPVMSSVVTKP
CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1989883 [H]