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The map label for this gene is rsmE [H]

Identifier: 193211908

GI number: 193211908

Start: 243204

End: 243947

Strand: Direct

Name: rsmE [H]

Synonym: Cpar_0234

Alternate gene names: 193211908

Gene position: 243204-243947 (Clockwise)

Preceding gene: 193211907

Following gene: 193211909

Centisome position: 10.62

GC content: 64.11

Gene sequence:

>744_bases
ATGGATCTGTTTTACGTACTTCCGCATCAGCTCGATCTCGACCGCGGGCGTGCCTCGATCGGTGGAGAGGAGTTTCACCA
CCTCGCGCGCGTGCTGCGCTGCCGCGAAGGCGACACGGTGCCTGTGACCGACGGCGCGGGGCTTTCAGCAGAGCTGGTGG
TCGAGTCAATCGGCAAGAGCGAGCTGCAAGGCTCGATCCGTAACCCGCGCCGCGTGCCGCCGCCGGAGACGCGCGTGTCG
GTGGCCATGTCGCTTCTGAAAGCCCCCCAGCGCTTCGATTTCTTTCTTGAAAAAGCGACCGAGCTGGGCATCGACCGCAT
CATTCCCATCATCACACAGCGAACGGTTTCAACCCCCGATCTCAAAAAAATTGACCGTAAAGCCGAGCGGTGGCGCAACA
TCGTGCATTCGGCCGCCCGTCAGAGCCGCCGGTATTACCTGCCCGAGCTGAGCACGCCGTGCTCGTTTCAGGAGGCGCTT
CAGCTTGAAGGCTACGACCTCCGGCTGATCGCCCACGAGTCGGAAGAGGCATTCGGGCCTTTCGAACCGGCCGGGCAGTG
CGTGCTGTTTTTCATCGGTCCGGAAGGAGGCTTCAGCGAAGCGGAAATTGCCGCTGCCGCGCAGTCCGGCGTCAGGCCAG
TCTCCTTCGGCGCCTCGGTGCTCAGGGCCGAAACCGCCGGGGTGTTCGCGGTGGCGCTGGTTCGGGCTGCACTTCTTGGC
CTGCCCGGCGCCCGGCAGCTCTGA

Upstream 100 bases:

>100_bases
AGCTACTATGGTGGCCGCAGCCTCGGCGCTCAAGGAGGCTGGTGTGGACGAAGTGGCGTTTGCGGTCGTGGCCGTTACAG
AAGAAAAAGAGTAGCGCTTC

Downstream 100 bases:

>100_bases
GGCGTTCCTCTCTTTTTGCACAATGGCGGCGGCTGTGTACATTGAAGACGATTCCAGATGACCGGAGATGACTTCTGAAC
CAGTTGCAACGCTATGTCAC

Product: 16S ribosomal RNA methyltransferase RsmE

Products: NA

Alternate protein names: 16S rRNA m3U1498 methyltransferase [H]

Number of amino acids: Translated: 247; Mature: 247

Protein sequence:

>247_residues
MDLFYVLPHQLDLDRGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKSELQGSIRNPRRVPPPETRVS
VAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPDLKKIDRKAERWRNIVHSAARQSRRYYLPELSTPCSFQEAL
QLEGYDLRLIAHESEEAFGPFEPAGQCVLFFIGPEGGFSEAEIAAAAQSGVRPVSFGASVLRAETAGVFAVALVRAALLG
LPGARQL

Sequences:

>Translated_247_residues
MDLFYVLPHQLDLDRGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKSELQGSIRNPRRVPPPETRVS
VAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPDLKKIDRKAERWRNIVHSAARQSRRYYLPELSTPCSFQEAL
QLEGYDLRLIAHESEEAFGPFEPAGQCVLFFIGPEGGFSEAEIAAAAQSGVRPVSFGASVLRAETAGVFAVALVRAALLG
LPGARQL
>Mature_247_residues
MDLFYVLPHQLDLDRGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKSELQGSIRNPRRVPPPETRVS
VAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPDLKKIDRKAERWRNIVHSAARQSRRYYLPELSTPCSFQEAL
QLEGYDLRLIAHESEEAFGPFEPAGQCVLFFIGPEGGFSEAEIAAAAQSGVRPVSFGASVLRAETAGVFAVALVRAALLG
LPGARQL

Specific function: Specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [H]

COG id: COG1385

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA methyltransferase RsmE family [H]

Homologues:

Organism=Escherichia coli, GI87082186, Length=213, Percent_Identity=27.2300469483568, Blast_Score=77, Evalue=1e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001206
- InterPro:   IPR015947
- InterPro:   IPR006700 [H]

Pfam domain/function: PF04452 Methyltrans_RNA [H]

EC number: =2.1.1.193 [H]

Molecular weight: Translated: 27076; Mature: 27076

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLFYVLPHQLDLDRGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKS
CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCHH
ELQGSIRNPRRVPPPETRVSVAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPD
HHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC
LKKIDRKAERWRNIVHSAARQSRRYYLPELSTPCSFQEALQLEGYDLRLIAHESEEAFGP
HHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCC
FEPAGQCVLFFIGPEGGFSEAEIAAAAQSGVRPVSFGASVLRAETAGVFAVALVRAALLG
CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPGARQL
CCCCCCC
>Mature Secondary Structure
MDLFYVLPHQLDLDRGRASIGGEEFHHLARVLRCREGDTVPVTDGAGLSAELVVESIGKS
CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHCHH
ELQGSIRNPRRVPPPETRVSVAMSLLKAPQRFDFFLEKATELGIDRIIPIITQRTVSTPD
HHHCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCHHHHHHHHHHCCCCCCC
LKKIDRKAERWRNIVHSAARQSRRYYLPELSTPCSFQEALQLEGYDLRLIAHESEEAFGP
HHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHHHHHCCCCEEEEEEECCCCCCCC
FEPAGQCVLFFIGPEGGFSEAEIAAAAQSGVRPVSFGASVLRAETAGVFAVALVRAALLG
CCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
LPGARQL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]