Click here to switch to the map view.

The map label for this gene is 193211756

Identifier: 193211756

GI number: 193211756

Start: 93970

End: 95070

Strand: Direct

Name: 193211756

Synonym: Cpar_0081

Alternate gene names: NA

Gene position: 93970-95070 (Clockwise)

Preceding gene: 193211755

Following gene: 193211757

Centisome position: 4.1

GC content: 50.95

Gene sequence:

>1101_bases
ATGAATACCGAAAAAACCTACCTCATTCGCCTCTATTTCAAGAACGCCCTTCGCGTGGGAGCAGCCCGTTCTGGCGTAGG
CATAGAGGCATCTCAAGACTACATCCATTCGGACTCCTTTTGGGCAGCGCTTGCAAACTACTGGGCGCTTCTTGGCTCTG
CCGGAGGCATCTCATTTGCTGAGTTTCTCGAAGGCTTTCGCGTAGGGAGTACTAGCTCTGGCGCATCTTCTGGCGTGCCG
CCACTCTTTACTATTTCGTCAGTATTTCCGTTTGCCAGAAGTTCAGGAATGCGCCGCTATTGGCTGCCTAAACCCCTCTC
CGTTCCGTTTGACCTCTCCACGAGCAACTCTAAAGAGTCGAGAGATTCAGAGAGAGAGAACTACGGCAAAGCGTTGAAAC
AGGCTCGACTTCTCTCGGACAAAACTTTCACCAATTGGCAAGCTTTTGAGCATCAGGTTGGGTACGAAGTAGGCAACGAA
AAGGATTTCAGCTCCACAGGCAAAAACAACGTTCGTCCCCAGTCCTCTCTTGACAGGATAACAAGCCAATCGAATCTCTT
TCATAGCGGCATCTCCTACCTCAATCCCAACGACAATGACGAAGGGCTGTACGTTCTTGTGAAAACATCCGATGAGCGCG
TCAAGGAAGCGCTGGAAGAGGTGCTCGATGTTATCCGCGATGCCGGTGGACTTGGCGGAGACATCAGCTCAGGATGTGGC
GAGTTGGTCAACTATTCGATAGAGCTTATTGGCAGCAATGACAAAAAATGGGCTTTTCTGCGTGAGTGTGATGGTGCAAA
TGCCCGTTGCCTGCTCTCACTCTGTTTGCCGAGCGACCCAAAAACCATCAGCACCAAATTGGTTGCCTATGACACCGTAC
TCCGCAAAGGGTGGACAGGCTCCTTGACGGCGAGCCTGCAACGCAAACGCCAAACCCTTTACATGCTTTCGGAAGGAACT
GTTCTTTCCGTTGAAGAGCAAGGACAAATGGCGACCATTACCCCCGCCTCCACAAAAACACCTGATTGGACAGGCCAACA
TCCGGTTTATCGTTACGGATATGCGTTCTCAGTACCAATCAAGATCACCTTCGAGGATTGA

Upstream 100 bases:

>100_bases
TTTTATGACCTCAAAAAGATGGCAACCAAGGGTGCGAAGGTAGCCGGGGAGTTTGGGCCTGCACCATCGAAAGCTCCAAC
TACATGAGATCATCAACGCA

Downstream 100 bases:

>100_bases
GATGGATAAGACAACAAAATCTAAAGAAACTGCCATTATCGAGCTGGAAACGCTCACCCCTCTCTTCATTAAAGGCAAAG
ACCCCGACTATGGCGAGGGA

Product: Csm4 family CRISPR-associated RAMP protein

Products: NA

Alternate protein names: Crispr-Associated Ramp Protein Csm4 Family; CRISPR-Associated RAMP Protein Csm4 Family; Csm4 Family CRISPR-Associated RAMP Protein

Number of amino acids: Translated: 366; Mature: 366

Protein sequence:

>366_residues
MNTEKTYLIRLYFKNALRVGAARSGVGIEASQDYIHSDSFWAALANYWALLGSAGGISFAEFLEGFRVGSTSSGASSGVP
PLFTISSVFPFARSSGMRRYWLPKPLSVPFDLSTSNSKESRDSERENYGKALKQARLLSDKTFTNWQAFEHQVGYEVGNE
KDFSSTGKNNVRPQSSLDRITSQSNLFHSGISYLNPNDNDEGLYVLVKTSDERVKEALEEVLDVIRDAGGLGGDISSGCG
ELVNYSIELIGSNDKKWAFLRECDGANARCLLSLCLPSDPKTISTKLVAYDTVLRKGWTGSLTASLQRKRQTLYMLSEGT
VLSVEEQGQMATITPASTKTPDWTGQHPVYRYGYAFSVPIKITFED

Sequences:

>Translated_366_residues
MNTEKTYLIRLYFKNALRVGAARSGVGIEASQDYIHSDSFWAALANYWALLGSAGGISFAEFLEGFRVGSTSSGASSGVP
PLFTISSVFPFARSSGMRRYWLPKPLSVPFDLSTSNSKESRDSERENYGKALKQARLLSDKTFTNWQAFEHQVGYEVGNE
KDFSSTGKNNVRPQSSLDRITSQSNLFHSGISYLNPNDNDEGLYVLVKTSDERVKEALEEVLDVIRDAGGLGGDISSGCG
ELVNYSIELIGSNDKKWAFLRECDGANARCLLSLCLPSDPKTISTKLVAYDTVLRKGWTGSLTASLQRKRQTLYMLSEGT
VLSVEEQGQMATITPASTKTPDWTGQHPVYRYGYAFSVPIKITFED
>Mature_366_residues
MNTEKTYLIRLYFKNALRVGAARSGVGIEASQDYIHSDSFWAALANYWALLGSAGGISFAEFLEGFRVGSTSSGASSGVP
PLFTISSVFPFARSSGMRRYWLPKPLSVPFDLSTSNSKESRDSERENYGKALKQARLLSDKTFTNWQAFEHQVGYEVGNE
KDFSSTGKNNVRPQSSLDRITSQSNLFHSGISYLNPNDNDEGLYVLVKTSDERVKEALEEVLDVIRDAGGLGGDISSGCG
ELVNYSIELIGSNDKKWAFLRECDGANARCLLSLCLPSDPKTISTKLVAYDTVLRKGWTGSLTASLQRKRQTLYMLSEGT
VLSVEEQGQMATITPASTKTPDWTGQHPVYRYGYAFSVPIKITFED

Specific function: Unknown

COG id: COG1567

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40347; Mature: 40347

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTEKTYLIRLYFKNALRVGAARSGVGIEASQDYIHSDSFWAALANYWALLGSAGGISFA
CCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCHH
EFLEGFRVGSTSSGASSGVPPLFTISSVFPFARSSGMRRYWLPKPLSVPFDLSTSNSKES
HHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHH
RDSERENYGKALKQARLLSDKTFTNWQAFEHQVGYEVGNEKDFSSTGKNNVRPQSSLDRI
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
TSQSNLFHSGISYLNPNDNDEGLYVLVKTSDERVKEALEEVLDVIRDAGGLGGDISSGCG
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ELVNYSIELIGSNDKKWAFLRECDGANARCLLSLCLPSDPKTISTKLVAYDTVLRKGWTG
HHHCEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
SLTASLQRKRQTLYMLSEGTVLSVEEQGQMATITPASTKTPDWTGQHPVYRYGYAFSVPI
HHHHHHHHHHHEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEEEECEEEEEEE
KITFED
EEEECC
>Mature Secondary Structure
MNTEKTYLIRLYFKNALRVGAARSGVGIEASQDYIHSDSFWAALANYWALLGSAGGISFA
CCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCCCCCHH
EFLEGFRVGSTSSGASSGVPPLFTISSVFPFARSSGMRRYWLPKPLSVPFDLSTSNSKES
HHHHHHCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCHH
RDSERENYGKALKQARLLSDKTFTNWQAFEHQVGYEVGNEKDFSSTGKNNVRPQSSLDRI
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHH
TSQSNLFHSGISYLNPNDNDEGLYVLVKTSDERVKEALEEVLDVIRDAGGLGGDISSGCG
HHHHHHHHHCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
ELVNYSIELIGSNDKKWAFLRECDGANARCLLSLCLPSDPKTISTKLVAYDTVLRKGWTG
HHHCEEEEEEECCCCCEEEEEECCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCC
SLTASLQRKRQTLYMLSEGTVLSVEEQGQMATITPASTKTPDWTGQHPVYRYGYAFSVPI
HHHHHHHHHHHEEEEEECCCEEEEECCCCEEEECCCCCCCCCCCCCCCEEEECEEEEEEE
KITFED
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA