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The map label for this gene is 193211755

Identifier: 193211755

GI number: 193211755

Start: 93087

End: 93956

Strand: Direct

Name: 193211755

Synonym: Cpar_0080

Alternate gene names: NA

Gene position: 93087-93956 (Clockwise)

Preceding gene: 193211754

Following gene: 193211756

Centisome position: 4.07

GC content: 47.93

Gene sequence:

>870_bases
ATGAGCGATCCAAAACAGCCAAAAACGATCAAGCTCTTGGGCTATGTCAAAATATATGGTGAGATCGAAGCAGTCACCGG
CCTGCATATCGGCGGAACCGCTGACGCTATCGACAAGGGAGGAATCGATTCACCTGTCATCAAAAATCCGATAACAAATG
AACCATACATCCCGGGCAGCTCGCTCAGAGGACGAATGCGCTCCCTGCTTGAGAAGAAAAATGGGAAACCATTGACAGAG
ATGACAAAAGGCATCTGGATGGAGATTTATGAAGATGACAAGAAAGAAGATGCTGAGGATGGCAACAAAAAGAAGGCAAA
AGACTCAGAGGTGTGCCGCGTTTTTGGCAATGCGCACACAGGACTCCCTTCTATTTTGATTGTTCGGGACGCACTTTATA
CAGAAGAGACAAAAAATAACGGTTACATCGAGTCCGATCTACCGGTAACGGAAGCAAAGATGGAGATTGCCGTTGACAGG
ATAACTGCCCAGGCATTGCCCCGAACCATCGAGCGGGTTCCATCAGGAGCGCGGTTTGATTTTTCAATGGTGTACAGGGT
TCAGCAGGACGAAAATCACCCAAACCCGACCGATACTCTCGAAAAAGACTTGAAGAATATTCTTGAAGCGCTCAAAGATA
TTGAAGAGTTTGACGGACTTGGAGGCAACACCGCACGGGGACATGGCCAGGTAAAATTTCACCTGAAGCCGTTGCAGGTT
ACCGTGTTGGAACCAAAGCAGCAATCATCAGAAATTCTGGGTGAGAATCCTGATGCGAAAGGCTTTTATGACCTCAAAAA
GATGGCAACCAAGGGTGCGAAGGTAGCCGGGGAGTTTGGGCCTGCACCATCGAAAGCTCCAACTACATGA

Upstream 100 bases:

>100_bases
AGCTGATCTTCGTCTCTTCGTTGAATTTTTTGAGGCGATTCTTGACTATCATGCCTCAATAGAAAAGAGTGTAAACCACA
ACTAATCAGGAGAGTTAGTG

Downstream 100 bases:

>100_bases
GATCATCAACGCAATGAATACCGAAAAAACCTACCTCATTCGCCTCTATTTCAAGAACGCCCTTCGCGTGGGAGCAGCCC
GTTCTGGCGTAGGCATAGAG

Product: Csm3 family CRISPR-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 289; Mature: 288

Protein sequence:

>289_residues
MSDPKQPKTIKLLGYVKIYGEIEAVTGLHIGGTADAIDKGGIDSPVIKNPITNEPYIPGSSLRGRMRSLLEKKNGKPLTE
MTKGIWMEIYEDDKKEDAEDGNKKKAKDSEVCRVFGNAHTGLPSILIVRDALYTEETKNNGYIESDLPVTEAKMEIAVDR
ITAQALPRTIERVPSGARFDFSMVYRVQQDENHPNPTDTLEKDLKNILEALKDIEEFDGLGGNTARGHGQVKFHLKPLQV
TVLEPKQQSSEILGENPDAKGFYDLKKMATKGAKVAGEFGPAPSKAPTT

Sequences:

>Translated_289_residues
MSDPKQPKTIKLLGYVKIYGEIEAVTGLHIGGTADAIDKGGIDSPVIKNPITNEPYIPGSSLRGRMRSLLEKKNGKPLTE
MTKGIWMEIYEDDKKEDAEDGNKKKAKDSEVCRVFGNAHTGLPSILIVRDALYTEETKNNGYIESDLPVTEAKMEIAVDR
ITAQALPRTIERVPSGARFDFSMVYRVQQDENHPNPTDTLEKDLKNILEALKDIEEFDGLGGNTARGHGQVKFHLKPLQV
TVLEPKQQSSEILGENPDAKGFYDLKKMATKGAKVAGEFGPAPSKAPTT
>Mature_288_residues
SDPKQPKTIKLLGYVKIYGEIEAVTGLHIGGTADAIDKGGIDSPVIKNPITNEPYIPGSSLRGRMRSLLEKKNGKPLTEM
TKGIWMEIYEDDKKEDAEDGNKKKAKDSEVCRVFGNAHTGLPSILIVRDALYTEETKNNGYIESDLPVTEAKMEIAVDRI
TAQALPRTIERVPSGARFDFSMVYRVQQDENHPNPTDTLEKDLKNILEALKDIEEFDGLGGNTARGHGQVKFHLKPLQVT
VLEPKQQSSEILGENPDAKGFYDLKKMATKGAKVAGEFGPAPSKAPTT

Specific function: Unknown

COG id: COG1337

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.jannaschii MJ1669 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013412
- InterPro:   IPR005537 [H]

Pfam domain/function: PF03787 RAMPs [H]

EC number: NA

Molecular weight: Translated: 31777; Mature: 31646

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDPKQPKTIKLLGYVKIYGEIEAVTGLHIGGTADAIDKGGIDSPVIKNPITNEPYIPGS
CCCCCCCCEEEEEEEEEEEEEEEHEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCH
SLRGRMRSLLEKKNGKPLTEMTKGIWMEIYEDDKKEDAEDGNKKKAKDSEVCRVFGNAHT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHCCCCC
GLPSILIVRDALYTEETKNNGYIESDLPVTEAKMEIAVDRITAQALPRTIERVPSGARFD
CCCEEEEEHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FSMVYRVQQDENHPNPTDTLEKDLKNILEALKDIEEFDGLGGNTARGHGQVKFHLKPLQV
HHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEE
TVLEPKQQSSEILGENPDAKGFYDLKKMATKGAKVAGEFGPAPSKAPTT
EEECCCHHHHHHHCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SDPKQPKTIKLLGYVKIYGEIEAVTGLHIGGTADAIDKGGIDSPVIKNPITNEPYIPGS
CCCCCCCEEEEEEEEEEEEEEEHEEEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCH
SLRGRMRSLLEKKNGKPLTEMTKGIWMEIYEDDKKEDAEDGNKKKAKDSEVCRVFGNAHT
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHHCCCCC
GLPSILIVRDALYTEETKNNGYIESDLPVTEAKMEIAVDRITAQALPRTIERVPSGARFD
CCCEEEEEHHHHHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
FSMVYRVQQDENHPNPTDTLEKDLKNILEALKDIEEFDGLGGNTARGHGQVKFHLKPLQV
HHHEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEEEE
TVLEPKQQSSEILGENPDAKGFYDLKKMATKGAKVAGEFGPAPSKAPTT
EEECCCHHHHHHHCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]