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The map label for this gene is 193211753

Identifier: 193211753

GI number: 193211753

Start: 90205

End: 92598

Strand: Direct

Name: 193211753

Synonym: Cpar_0078

Alternate gene names: NA

Gene position: 90205-92598 (Clockwise)

Preceding gene: 193211752

Following gene: 193211754

Centisome position: 3.94

GC content: 52.46

Gene sequence:

>2394_bases
ATGTCGAGTCAGCATCCAGTCATCGAATGTGGAATCCGGCTTCTGAAATCACCAGAAGGAGAACTCAAAACCGGATGGAC
AGAGCAGGGCGGCAAAGAGCTTGCGGAAGCCTGCTCACTGCTGAACATCAAGCTTGATGAGCCTCTGACGCTTCAAGCGC
TGCAATCTGTCTTTCTGGAAGAGAACTCTCCGGAGGCTGCGCCAATGTGGTTTAAGCCTTGCGAACTCAAAGCCGGACCA
CTTCCCGCTCTCGTTGAAACCCCAGAACCCGACCAACTCACTCTCCGAAACACCCTCCAGGGCCTCCGCCAAACCGGCAA
TGGAGAGGCGGCTTTTTCCGATCCGTTGACAGAGCTGGAACACTACGGCAGTTTCATTGCCACCTCTGCTCACGCCTCAA
CTCCCCTTTTCGACCTCTTCAAAAGCCTTGCCGCCCTCTACGACTGCCTCAAACAGGGCACTCCTGAAACACCATGCCTT
ATGGTGAGTTGCGACTTTTCAGGCATTCAGGACACCGTGTACACCATCACCTCCAAAGGTGCGCTCAAAACCCTGCGGGC
GCGCTCGTTCATGCTTGAGCTGCTCTGCGAACACCTGATCTACGAAATTCTTCACATGGCACGCTCTGACCGTCACGCTG
TCATCTATTCCGGTGGTGGAGGCTTCAGCCTATTGTTGCCCAACATCGAACAATCGCACGACAGCGATGGGGGGATCATC
GAAAAAATCGAGGAGTACAGAGAGACCATCAACAAGTGGGCGTTGAAAGAGTTTGAAGGGCGGCTCTTCATCGCTCTCGA
CGCAAAGCCTTTTGATAAAGAAAAGCTTCGCGACCAGGCATCGTTCCAGGAGATACGTCAATCCCAAGCCGACGCGCTTG
ATCGCCTCAAACGGCGCAAATTCAGTGACCATCTTGAGACGCTCTTCACTCCGTCAATGCCGGAACAAGTAACGGTAAAG
AAAGAGTGCCAGATAACCCATCGGGACGATCTGACCGATGATGAGATGTTCGACCTCAACGAGCTAAAAAAGTGCGTCTC
CATGGCATCAGTGGATGCCGACAAGCGTGACAGCGACGACTACCTCTGGGTCTCGGAAAGCTGCTACCACCAGTTTAAGC
TTGGCGACAAGCTGGTTGGAGCCACCGGCATCTTCAGATACACAACCGCCATTGACCGCTCAAAAAACCCCGGCACCCTC
GTGCTGCCCAGCGCTTCTGGCGGGATGGTCTCTTACACTGTCGAAGAGGTCGCCGACGCCACTCCGGCGACTCAATGGTC
GATCAACTCATGGGATGGCCAGAGACTCTTCCTCTACGCCAACTATGTCAGAAAGCATGGTGAGCTCTCAGCCTACGCAA
GGCAGGAGGAGAAAGAGCAGTTACTCGAAGAGGGTAGGAGGTCTGTCAAGGCTGACGACACCGCCTCCTTTGCCGGTCTT
GCCGCGAGCTCCTGCGGTGCCGACCTCATTGGCGCACTCCGCATGGATGTCGATAATCTCGGGAAGCTCTTCAGCAGCAT
CAGCAACATTGCCCAGCTCTCAGCACGCTCACGAATGCTGAACCTTTTCTTCAAGCTCCATCTCAACCACATCTGCGCAA
ACCGCTCTTTTGATCTTCTCAAAAAAAATCAAGCAGAGCACGAAGAGTGGGGTAAACCGGGGCGCAATGTCTCGATCATC
TACGCCGGTGGTGACGACCTCTTCATTGTGGGGGCGTGGGATGAGACCGTTGAGTTGGCCTTTGATATTCAGGAGGAGTT
TGAGTGTTTCACTGCCGCCCTTCCCAAGGGAGCGAATGGAATCAGCGGCGGCTTGACGCTCCACCAGCCGAAGTTCCCGC
TTTATCAGATGGCCCGCCTCTCAGCCGAAGCCGAAGCGTACGCAAAGGGTGATCGTGACGCCGAAGAGCTTAAGCCAAAG
AAAAACCGTATTTCGCTCTTTTACGACCACTCAAAAGTGAACCGAAAGAGGCGGCTTGGGGACAGAGAGCTGTCGCAGCG
GTATATGCTCTCTATGCAGTGGGGGCTGGCCAATGCGTTTCTCCGCTCGTTGATGAAGGTGTATCAACGCTGCTTTAAAC
AAACTGCATTTCAGAGCGAAGAGAGAAAGGGAATTGAAATTGAAAAATTCAGCTACGGCACCATTGAAAAGTGGTTTGCC
GTTATCAAAAAATATCAGCAAAGCAATCAACTCTACCTGCCTACAATGGCTCGGGTTATGAAAGATGTCGAACGAGAATT
TTCTGACGACGACAAAGACGATAAAGACGACAAAGCTGAGCTGTTCAAAAATCTGGTTTCCTATCTCTACACAACAGAAG
AGAACAAAAGAAACTGGATATCTCACTTGCATATCGCACTCAACTGGCTAACCTATCTCAGGAGAAAAGTATAA

Upstream 100 bases:

>100_bases
ATGGTAACTCCCCAAAGGGTATGAGTATCCCCGACCCTGATCTGCGATTTTCGGTAGAACGACTTTTTGCCTTTTTGTAA
GCGCATTATTCTGTACCGTT

Downstream 100 bases:

>100_bases
TGGCAGGAAAAGAGTTTGATTTCATTAAAGAGTTGGGAGAGTTGCCAAAACTGGACGAAGTAAAGAAAAGGCTGGAAAGA
GTAAACACCTTTTCCTCTGC

Product: Csm1 family CRISPR-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 797; Mature: 796

Protein sequence:

>797_residues
MSSQHPVIECGIRLLKSPEGELKTGWTEQGGKELAEACSLLNIKLDEPLTLQALQSVFLEENSPEAAPMWFKPCELKAGP
LPALVETPEPDQLTLRNTLQGLRQTGNGEAAFSDPLTELEHYGSFIATSAHASTPLFDLFKSLAALYDCLKQGTPETPCL
MVSCDFSGIQDTVYTITSKGALKTLRARSFMLELLCEHLIYEILHMARSDRHAVIYSGGGGFSLLLPNIEQSHDSDGGII
EKIEEYRETINKWALKEFEGRLFIALDAKPFDKEKLRDQASFQEIRQSQADALDRLKRRKFSDHLETLFTPSMPEQVTVK
KECQITHRDDLTDDEMFDLNELKKCVSMASVDADKRDSDDYLWVSESCYHQFKLGDKLVGATGIFRYTTAIDRSKNPGTL
VLPSASGGMVSYTVEEVADATPATQWSINSWDGQRLFLYANYVRKHGELSAYARQEEKEQLLEEGRRSVKADDTASFAGL
AASSCGADLIGALRMDVDNLGKLFSSISNIAQLSARSRMLNLFFKLHLNHICANRSFDLLKKNQAEHEEWGKPGRNVSII
YAGGDDLFIVGAWDETVELAFDIQEEFECFTAALPKGANGISGGLTLHQPKFPLYQMARLSAEAEAYAKGDRDAEELKPK
KNRISLFYDHSKVNRKRRLGDRELSQRYMLSMQWGLANAFLRSLMKVYQRCFKQTAFQSEERKGIEIEKFSYGTIEKWFA
VIKKYQQSNQLYLPTMARVMKDVEREFSDDDKDDKDDKAELFKNLVSYLYTTEENKRNWISHLHIALNWLTYLRRKV

Sequences:

>Translated_797_residues
MSSQHPVIECGIRLLKSPEGELKTGWTEQGGKELAEACSLLNIKLDEPLTLQALQSVFLEENSPEAAPMWFKPCELKAGP
LPALVETPEPDQLTLRNTLQGLRQTGNGEAAFSDPLTELEHYGSFIATSAHASTPLFDLFKSLAALYDCLKQGTPETPCL
MVSCDFSGIQDTVYTITSKGALKTLRARSFMLELLCEHLIYEILHMARSDRHAVIYSGGGGFSLLLPNIEQSHDSDGGII
EKIEEYRETINKWALKEFEGRLFIALDAKPFDKEKLRDQASFQEIRQSQADALDRLKRRKFSDHLETLFTPSMPEQVTVK
KECQITHRDDLTDDEMFDLNELKKCVSMASVDADKRDSDDYLWVSESCYHQFKLGDKLVGATGIFRYTTAIDRSKNPGTL
VLPSASGGMVSYTVEEVADATPATQWSINSWDGQRLFLYANYVRKHGELSAYARQEEKEQLLEEGRRSVKADDTASFAGL
AASSCGADLIGALRMDVDNLGKLFSSISNIAQLSARSRMLNLFFKLHLNHICANRSFDLLKKNQAEHEEWGKPGRNVSII
YAGGDDLFIVGAWDETVELAFDIQEEFECFTAALPKGANGISGGLTLHQPKFPLYQMARLSAEAEAYAKGDRDAEELKPK
KNRISLFYDHSKVNRKRRLGDRELSQRYMLSMQWGLANAFLRSLMKVYQRCFKQTAFQSEERKGIEIEKFSYGTIEKWFA
VIKKYQQSNQLYLPTMARVMKDVEREFSDDDKDDKDDKAELFKNLVSYLYTTEENKRNWISHLHIALNWLTYLRRKV
>Mature_796_residues
SSQHPVIECGIRLLKSPEGELKTGWTEQGGKELAEACSLLNIKLDEPLTLQALQSVFLEENSPEAAPMWFKPCELKAGPL
PALVETPEPDQLTLRNTLQGLRQTGNGEAAFSDPLTELEHYGSFIATSAHASTPLFDLFKSLAALYDCLKQGTPETPCLM
VSCDFSGIQDTVYTITSKGALKTLRARSFMLELLCEHLIYEILHMARSDRHAVIYSGGGGFSLLLPNIEQSHDSDGGIIE
KIEEYRETINKWALKEFEGRLFIALDAKPFDKEKLRDQASFQEIRQSQADALDRLKRRKFSDHLETLFTPSMPEQVTVKK
ECQITHRDDLTDDEMFDLNELKKCVSMASVDADKRDSDDYLWVSESCYHQFKLGDKLVGATGIFRYTTAIDRSKNPGTLV
LPSASGGMVSYTVEEVADATPATQWSINSWDGQRLFLYANYVRKHGELSAYARQEEKEQLLEEGRRSVKADDTASFAGLA
ASSCGADLIGALRMDVDNLGKLFSSISNIAQLSARSRMLNLFFKLHLNHICANRSFDLLKKNQAEHEEWGKPGRNVSIIY
AGGDDLFIVGAWDETVELAFDIQEEFECFTAALPKGANGISGGLTLHQPKFPLYQMARLSAEAEAYAKGDRDAEELKPKK
NRISLFYDHSKVNRKRRLGDRELSQRYMLSMQWGLANAFLRSLMKVYQRCFKQTAFQSEERKGIEIEKFSYGTIEKWFAV
IKKYQQSNQLYLPTMARVMKDVEREFSDDDKDDKDDKAELFKNLVSYLYTTEENKRNWISHLHIALNWLTYLRRKV

Specific function: Unknown

COG id: COG1353

COG function: function code R; Predicted hydrolase of the HD superfamily (permuted catalytic motifs)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013408
- InterPro:   IPR000160 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 90364; Mature: 90233

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQHPVIECGIRLLKSPEGELKTGWTEQGGKELAEACSLLNIKLDEPLTLQALQSVFLE
CCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHC
ENSPEAAPMWFKPCELKAGPLPALVETPEPDQLTLRNTLQGLRQTGNGEAAFSDPLTELE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
HYGSFIATSAHASTPLFDLFKSLAALYDCLKQGTPETPCLMVSCDFSGIQDTVYTITSKG
HHCCHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHEEECCH
ALKTLRARSFMLELLCEHLIYEILHMARSDRHAVIYSGGGGFSLLLPNIEQSHDSDGGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHH
EKIEEYRETINKWALKEFEGRLFIALDAKPFDKEKLRDQASFQEIRQSQADALDRLKRRK
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSDHLETLFTPSMPEQVTVKKECQITHRDDLTDDEMFDLNELKKCVSMASVDADKRDSDD
HHHHHHHHCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
YLWVSESCYHQFKLGDKLVGATGIFRYTTAIDRSKNPGTLVLPSASGGMVSYTVEEVADA
EEEECHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHCC
TPATQWSINSWDGQRLFLYANYVRKHGELSAYARQEEKEQLLEEGRRSVKADDTASFAGL
CCCCCCCCCCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AASSCGADLIGALRMDVDNLGKLFSSISNIAQLSARSRMLNLFFKLHLNHICANRSFDLL
HHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KKNQAEHEEWGKPGRNVSIIYAGGDDLFIVGAWDETVELAFDIQEEFECFTAALPKGANG
HCCCCCHHHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHCCHHHHHHHHHHHCCCCCCC
ISGGLTLHQPKFPLYQMARLSAEAEAYAKGDRDAEELKPKKNRISLFYDHSKVNRKRRLG
CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEECHHHHHHHHHCC
DRELSQRYMLSMQWGLANAFLRSLMKVYQRCFKQTAFQSEERKGIEIEKFSYGTIEKWFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHH
VIKKYQQSNQLYLPTMARVMKDVEREFSDDDKDDKDDKAELFKNLVSYLYTTEENKRNWI
HHHHHHHCCCEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
SHLHIALNWLTYLRRKV
HHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SSQHPVIECGIRLLKSPEGELKTGWTEQGGKELAEACSLLNIKLDEPLTLQALQSVFLE
CCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCHHHHHHHHHHHC
ENSPEAAPMWFKPCELKAGPLPALVETPEPDQLTLRNTLQGLRQTGNGEAAFSDPLTELE
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
HYGSFIATSAHASTPLFDLFKSLAALYDCLKQGTPETPCLMVSCDFSGIQDTVYTITSKG
HHCCHHEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHEEECCH
ALKTLRARSFMLELLCEHLIYEILHMARSDRHAVIYSGGGGFSLLLPNIEQSHDSDGGII
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCCCCCCCCCCHHH
EKIEEYRETINKWALKEFEGRLFIALDAKPFDKEKLRDQASFQEIRQSQADALDRLKRRK
HHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSDHLETLFTPSMPEQVTVKKECQITHRDDLTDDEMFDLNELKKCVSMASVDADKRDSDD
HHHHHHHHCCCCCCCCEEEHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
YLWVSESCYHQFKLGDKLVGATGIFRYTTAIDRSKNPGTLVLPSASGGMVSYTVEEVADA
EEEECHHHHHHHHCCCHHCCCHHHHHHHHHHCCCCCCCEEEEECCCCCEEEEEHHHHHCC
TPATQWSINSWDGQRLFLYANYVRKHGELSAYARQEEKEQLLEEGRRSVKADDTASFAGL
CCCCCCCCCCCCCCEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
AASSCGADLIGALRMDVDNLGKLFSSISNIAQLSARSRMLNLFFKLHLNHICANRSFDLL
HHHHCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
KKNQAEHEEWGKPGRNVSIIYAGGDDLFIVGAWDETVELAFDIQEEFECFTAALPKGANG
HCCCCCHHHHCCCCCCEEEEEECCCCEEEEECCCCHHHHHCCHHHHHHHHHHHCCCCCCC
ISGGLTLHQPKFPLYQMARLSAEAEAYAKGDRDAEELKPKKNRISLFYDHSKVNRKRRLG
CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEECHHHHHHHHHCC
DRELSQRYMLSMQWGLANAFLRSLMKVYQRCFKQTAFQSEERKGIEIEKFSYGTIEKWFA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCEEEECCCCCHHHHHH
VIKKYQQSNQLYLPTMARVMKDVEREFSDDDKDDKDDKAELFKNLVSYLYTTEENKRNWI
HHHHHHHCCCEEHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHH
SHLHIALNWLTYLRRKV
HHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]