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The map label for this gene is nrdD [H]

Identifier: 193214402

GI number: 193214402

Start: 792880

End: 794979

Strand: Direct

Name: nrdD [H]

Synonym: Ctha_0685

Alternate gene names: 193214402

Gene position: 792880-794979 (Clockwise)

Preceding gene: 193214389

Following gene: 193214403

Centisome position: 24.07

GC content: 50.57

Gene sequence:

>2100_bases
ATGCAAAAGACTTTTCAACAAATCGTCAAAAGAGACGGAACGCTTGTAGCGTTCGATTCGGAAAAAATCACACATGCCAT
TCTCGCTGCCGGCGAAGCCACTGGCGAATTTGGCGCTGAAACAGCGAAAAATTTAACCAACCTCGTCATCAACCTTGCGC
GAAAAACGCTTGGCGAAAAAACGCCCAGCGTGGAAGAAATTCAAGACCTTGTCGAGCGCGTGCTGCTTCAGTCGCCTTAC
ATGAAAACCGCGAAAGCCTATATTCTTTACCGCGATCAGCATCACAAAATTCGAGAAATCACCACAAAAGCCAGCATCAA
TTTAATTGATCAATATATCTCGCAAAGCGACTGGCGCGTTAGCGAAAACAGCAACATGTCGTATTCGCTGCAAGGGCTGA
ATAATTATATCTCCTCCGAAGTCAGCAAGGTGTATTGGCTGAATAAAATTTATCCGCCGGAAATTCGCGAGGCGCACATC
TGTGGCGAATTTCATATTCACGATTTGAACTCGCTTTCGGTGTATTGCGTCGGCTGGGATTTGCACGACCTGTTGGTGAA
AGGTTTCGGCGGCGTGAGCGGCAAAGTGGAAAGCAGTCCAGCAAAACATTTCAGAACCGCGCTCGGCCAAGTCACGAATT
TCTTCTACACGCTGCAAGGCGAAGCGGCGGGCGCACAGGCGTTTTCCAGCTTCGACACGCTGCTTGCACCGTTCATTCGC
TACGATCATTTGACTTACAAGGAAGTCAAGCAAGCGATGCAGGAATTTGTGTTTAACATCAACGTGCCAACGCGAACGGG
ATTTCAGACCCCATTTACAAATGTCACGATGGACTTGCAGCCATCTTCGAACTACGCAAACGAACCGGTGATTATTGGCG
GCGAGCCGCAACCGGAAACTTACGGCGAATTTCAGCATGAAATGAACCTCCTGAACCGCGCGTTTTTTGAGGTGATGACC
GAAGGCGATGCCAAAGGCCGCGTCTTTACGTTCCCGATTCCAACCTACAACATCACGAAAGATTTTGATTGGGACAATCC
CGAATTGGATTTGCTTTGGGAGGTCACGGGAAAATACGGCATTCCGTATTTCTCCAACTTCGTCAATTCCGATATGAACC
CTGAGGATGCGCGCTCGATGTGTTGCAGACTTCGCTTGGACAACCGCGAGCTGCGCAAACGCGGCGGCGGACTTTTCGGC
GCAAATCCTTTGACCGGCTCAATCGGCGTTGTGACGCTGAATTTGCCGCGCGCCGCGTATCAGGCGCAAGATGAATCGGC
GTTTTTTGAGCGGCTCGGAAAATTGGCCGACTTGGCAAGCAACAGCCTCGAAATCAAGCGCAAGGTTTTGGAAAACTACA
CGGAAGGCAACTTTTTCCCGTATTCAAAATTTTACCTTGCCGACATCAAATCGCGGTTTAATCGTTATTGGGAAAATCAT
TTCAGCACCATCGGCATCGTTGGCCTGAACGAGGCTTGCTTGAACCTCCTCGGCGAGGACATCGGCAGCGCCAAAGGCAA
TGAATTTTCGGTGAAAGTGATGGACTTTTTGCGCGAAAAAATTTCGGCCATCCAAGAGCGAACCGGCAACAATTACAATC
TTGAAGCCACGCCCGCCGAAGGCACGGCCTATCGCCTGGCGAAGTTGGACAAAAAAACGCTGGCGGGCATCCAATGCGCC
AACGAAACGCGTTATCAAAAGGGCGACGAGCCGTACTACACCAACTCGGCGCAGCTTCCCGTCAATTACACCGACGATCC
ATTTGAGCTGTTGGATTTGCAAGACGAACTCCAAACGAAATTCACGGGCGGCACGGTGGTGCATGTCTTCGTCGGCGAGC
GGATTCATTCGAAGGAAGCCGTCAAGCAGTTTGTCAAAACCGTGTGCATGAATTACAAATTGCCGTATTTCAGCCTAACG
CCGACCTTCAGCGTTTGCCCGACGCATGGCTACATCGCAGGCGAGCACGAAACTTGCCCGTCCTGCGGCACCGAATGCGA
GATTTATTCGCGCGTTGTGGGTTATCTGCGTCCGGTTAAGCAATGGAACAACGGCAAGAAGTCGGAGTATTCAAATCGCC
GAATGCTCAGCGTGGTTTAA

Upstream 100 bases:

>100_bases
ACGGTATTGAGTTGCCGGCGATCCTGGCACGCTAAGTCCGAGTACCAACATAGCAAGCAATTGGCTCAAATTTTGTCGCG
TAAACAAAAAAGGAGTTACC

Downstream 100 bases:

>100_bases
TTTTGTGCGAAATCAACTGACCGAGAAAACATGAAAATCGGTGGGTTTCAGAAATTTTCCTTGATTGATTTTCCGGGTGA
GGTTTGCGCTGTGGTTTTCA

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 699; Mature: 699

Protein sequence:

>699_residues
MQKTFQQIVKRDGTLVAFDSEKITHAILAAGEATGEFGAETAKNLTNLVINLARKTLGEKTPSVEEIQDLVERVLLQSPY
MKTAKAYILYRDQHHKIREITTKASINLIDQYISQSDWRVSENSNMSYSLQGLNNYISSEVSKVYWLNKIYPPEIREAHI
CGEFHIHDLNSLSVYCVGWDLHDLLVKGFGGVSGKVESSPAKHFRTALGQVTNFFYTLQGEAAGAQAFSSFDTLLAPFIR
YDHLTYKEVKQAMQEFVFNINVPTRTGFQTPFTNVTMDLQPSSNYANEPVIIGGEPQPETYGEFQHEMNLLNRAFFEVMT
EGDAKGRVFTFPIPTYNITKDFDWDNPELDLLWEVTGKYGIPYFSNFVNSDMNPEDARSMCCRLRLDNRELRKRGGGLFG
ANPLTGSIGVVTLNLPRAAYQAQDESAFFERLGKLADLASNSLEIKRKVLENYTEGNFFPYSKFYLADIKSRFNRYWENH
FSTIGIVGLNEACLNLLGEDIGSAKGNEFSVKVMDFLREKISAIQERTGNNYNLEATPAEGTAYRLAKLDKKTLAGIQCA
NETRYQKGDEPYYTNSAQLPVNYTDDPFELLDLQDELQTKFTGGTVVHVFVGERIHSKEAVKQFVKTVCMNYKLPYFSLT
PTFSVCPTHGYIAGEHETCPSCGTECEIYSRVVGYLRPVKQWNNGKKSEYSNRRMLSVV

Sequences:

>Translated_699_residues
MQKTFQQIVKRDGTLVAFDSEKITHAILAAGEATGEFGAETAKNLTNLVINLARKTLGEKTPSVEEIQDLVERVLLQSPY
MKTAKAYILYRDQHHKIREITTKASINLIDQYISQSDWRVSENSNMSYSLQGLNNYISSEVSKVYWLNKIYPPEIREAHI
CGEFHIHDLNSLSVYCVGWDLHDLLVKGFGGVSGKVESSPAKHFRTALGQVTNFFYTLQGEAAGAQAFSSFDTLLAPFIR
YDHLTYKEVKQAMQEFVFNINVPTRTGFQTPFTNVTMDLQPSSNYANEPVIIGGEPQPETYGEFQHEMNLLNRAFFEVMT
EGDAKGRVFTFPIPTYNITKDFDWDNPELDLLWEVTGKYGIPYFSNFVNSDMNPEDARSMCCRLRLDNRELRKRGGGLFG
ANPLTGSIGVVTLNLPRAAYQAQDESAFFERLGKLADLASNSLEIKRKVLENYTEGNFFPYSKFYLADIKSRFNRYWENH
FSTIGIVGLNEACLNLLGEDIGSAKGNEFSVKVMDFLREKISAIQERTGNNYNLEATPAEGTAYRLAKLDKKTLAGIQCA
NETRYQKGDEPYYTNSAQLPVNYTDDPFELLDLQDELQTKFTGGTVVHVFVGERIHSKEAVKQFVKTVCMNYKLPYFSLT
PTFSVCPTHGYIAGEHETCPSCGTECEIYSRVVGYLRPVKQWNNGKKSEYSNRRMLSVV
>Mature_699_residues
MQKTFQQIVKRDGTLVAFDSEKITHAILAAGEATGEFGAETAKNLTNLVINLARKTLGEKTPSVEEIQDLVERVLLQSPY
MKTAKAYILYRDQHHKIREITTKASINLIDQYISQSDWRVSENSNMSYSLQGLNNYISSEVSKVYWLNKIYPPEIREAHI
CGEFHIHDLNSLSVYCVGWDLHDLLVKGFGGVSGKVESSPAKHFRTALGQVTNFFYTLQGEAAGAQAFSSFDTLLAPFIR
YDHLTYKEVKQAMQEFVFNINVPTRTGFQTPFTNVTMDLQPSSNYANEPVIIGGEPQPETYGEFQHEMNLLNRAFFEVMT
EGDAKGRVFTFPIPTYNITKDFDWDNPELDLLWEVTGKYGIPYFSNFVNSDMNPEDARSMCCRLRLDNRELRKRGGGLFG
ANPLTGSIGVVTLNLPRAAYQAQDESAFFERLGKLADLASNSLEIKRKVLENYTEGNFFPYSKFYLADIKSRFNRYWENH
FSTIGIVGLNEACLNLLGEDIGSAKGNEFSVKVMDFLREKISAIQERTGNNYNLEATPAEGTAYRLAKLDKKTLAGIQCA
NETRYQKGDEPYYTNSAQLPVNYTDDPFELLDLQDELQTKFTGGTVVHVFVGERIHSKEAVKQFVKTVCMNYKLPYFSLT
PTFSVCPTHGYIAGEHETCPSCGTECEIYSRVVGYLRPVKQWNNGKKSEYSNRRMLSVV

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=758, Percent_Identity=24.2744063324538, Blast_Score=144, Evalue=2e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 79139; Mature: 79139

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS51161 ATP_CONE ; PS00639 THIOL_PROTEASE_HIS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKTFQQIVKRDGTLVAFDSEKITHAILAAGEATGEFGAETAKNLTNLVINLARKTLGEK
CCHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TPSVEEIQDLVERVLLQSPYMKTAKAYILYRDQHHKIREITTKASINLIDQYISQSDWRV
CCCHHHHHHHHHHHHHCCCCHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEE
SENSNMSYSLQGLNNYISSEVSKVYWLNKIYPPEIREAHICGEFHIHDLNSLSVYCVGWD
CCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECEEEEEECCCCEEEEECCC
LHDLLVKGFGGVSGKVESSPAKHFRTALGQVTNFFYTLQGEAAGAQAFSSFDTLLAPFIR
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHH
YDHLTYKEVKQAMQEFVFNINVPTRTGFQTPFTNVTMDLQPSSNYANEPVIIGGEPQPET
HCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCH
YGEFQHEMNLLNRAFFEVMTEGDAKGRVFTFPIPTYNITKDFDWDNPELDLLWEVTGKYG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC
IPYFSNFVNSDMNPEDARSMCCRLRLDNRELRKRGGGLFGANPLTGSIGVVTLNLPRAAY
CCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHH
QAQDESAFFERLGKLADLASNSLEIKRKVLENYTEGNFFPYSKFYLADIKSRFNRYWENH
HCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
FSTIGIVGLNEACLNLLGEDIGSAKGNEFSVKVMDFLREKISAIQERTGNNYNLEATPAE
CCEEEEEECCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
GTAYRLAKLDKKTLAGIQCANETRYQKGDEPYYTNSAQLPVNYTDDPFELLDLQDELQTK
CCHHHHHHHHHHHHHHCEECCCHHCCCCCCCCCCCCCEECCCCCCCHHHHHCCHHHHHHH
FTGGTVVHVFVGERIHSKEAVKQFVKTVCMNYKLPYFSLTPTFSVCPTHGYIAGEHETCP
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEECCCCCEEECCCCCCC
SCGTECEIYSRVVGYLRPVKQWNNGKKSEYSNRRMLSVV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
>Mature Secondary Structure
MQKTFQQIVKRDGTLVAFDSEKITHAILAAGEATGEFGAETAKNLTNLVINLARKTLGEK
CCHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
TPSVEEIQDLVERVLLQSPYMKTAKAYILYRDQHHKIREITTKASINLIDQYISQSDWRV
CCCHHHHHHHHHHHHHCCCCHHCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEE
SENSNMSYSLQGLNNYISSEVSKVYWLNKIYPPEIREAHICGEFHIHDLNSLSVYCVGWD
CCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECEEEEEECCCCEEEEECCC
LHDLLVKGFGGVSGKVESSPAKHFRTALGQVTNFFYTLQGEAAGAQAFSSFDTLLAPFIR
HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHHHHHH
YDHLTYKEVKQAMQEFVFNINVPTRTGFQTPFTNVTMDLQPSSNYANEPVIIGGEPQPET
HCCCCHHHHHHHHHHHHEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCEEECCCCCCCH
YGEFQHEMNLLNRAFFEVMTEGDAKGRVFTFPIPTYNITKDFDWDNPELDLLWEVTGKYG
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCC
IPYFSNFVNSDMNPEDARSMCCRLRLDNRELRKRGGGLFGANPLTGSIGVVTLNLPRAAY
CCHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCHHHH
QAQDESAFFERLGKLADLASNSLEIKRKVLENYTEGNFFPYSKFYLADIKSRFNRYWENH
HCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
FSTIGIVGLNEACLNLLGEDIGSAKGNEFSVKVMDFLREKISAIQERTGNNYNLEATPAE
CCEEEEEECCHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCEEEECCCC
GTAYRLAKLDKKTLAGIQCANETRYQKGDEPYYTNSAQLPVNYTDDPFELLDLQDELQTK
CCHHHHHHHHHHHHHHCEECCCHHCCCCCCCCCCCCCEECCCCCCCHHHHHCCHHHHHHH
FTGGTVVHVFVGERIHSKEAVKQFVKTVCMNYKLPYFSLTPTFSVCPTHGYIAGEHETCP
CCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEECCCCCEEECCCCCCC
SCGTECEIYSRVVGYLRPVKQWNNGKKSEYSNRRMLSVV
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]