Click here to switch to the map view.

The map label for this gene is ybcL [C]

Identifier: 193214259

GI number: 193214259

Start: 637891

End: 638520

Strand: Direct

Name: ybcL [C]

Synonym: Ctha_0540

Alternate gene names: 193214259

Gene position: 637891-638520 (Clockwise)

Preceding gene: 193214251

Following gene: 193214260

Centisome position: 19.37

GC content: 51.43

Gene sequence:

>630_bases
ATGCAACTTACCGTCCACGGATTTGAAAACGGCGCGCCGATTCCACCGCAATACGCATTCTGCGCGCCGGCCAGTCAAGG
CATTGTTTCTCTGGCAAAAAACAGAAATCCTGCGCTTAGCTGGTCTGATGTGCCAGAAGCAACCCAATCGTTCGCGCTGA
TTTTTCACGACCGTGATGTGCCTTCAAAACCGGACGATGTCAATCAAGAAGACCGGCTCGTTCCTGCCGATTTGCCGCGC
GTAGACTTTTTCCATTGGGTATTAATTGATATGCCTGCCTCGCTTCGCGCCATCGCAGAAGCAGTTGACGCCGACGGCGT
TGCCGCTCGTGGAAAAGCGCCGGGCAAAACGGAACTCGGGGTTCGCGGCATCAACGACTACACCAATTGGTTTAAGGGCG
ATGAAAACATGGAAGGCATTTATGCTGGATACGATGGCCCTTGTCCTCCATGGAACGACGCCATTGTGCACAATTATTTT
TTCACCTTGTATGCACTCGACATTGAAAGTTTATCCCTTTCGGGAAATTTCACCGGGCAGGATGCCCGGCAGGCCATGCA
AGGCCACATTTTGGCGGAAGCAACTTGGCATGGCACTTACACGGTTACCCCATCTTTGTTAAAAAAATAA

Upstream 100 bases:

>100_bases
AAGCCGTGTTTTTTTTGAATCTGCAAAATTCACAATAACGCCTCACTTGCGGCGTGCATGGCTGAGCCTATCATTTTTGA
ACCCAAAACCCATCGTTGAT

Downstream 100 bases:

>100_bases
AATCACCTGCAGCGTGTAGAGGCAAAAGTGTGTTGCCTCTACCGTTTTTCTTGCATTCCGCGTTGCTTATCTTTCGGTTA
AACAAATGGGCTTTTTTGCC

Product: PEBP family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MQLTVHGFENGAPIPPQYAFCAPASQGIVSLAKNRNPALSWSDVPEATQSFALIFHDRDVPSKPDDVNQEDRLVPADLPR
VDFFHWVLIDMPASLRAIAEAVDADGVAARGKAPGKTELGVRGINDYTNWFKGDENMEGIYAGYDGPCPPWNDAIVHNYF
FTLYALDIESLSLSGNFTGQDARQAMQGHILAEATWHGTYTVTPSLLKK

Sequences:

>Translated_209_residues
MQLTVHGFENGAPIPPQYAFCAPASQGIVSLAKNRNPALSWSDVPEATQSFALIFHDRDVPSKPDDVNQEDRLVPADLPR
VDFFHWVLIDMPASLRAIAEAVDADGVAARGKAPGKTELGVRGINDYTNWFKGDENMEGIYAGYDGPCPPWNDAIVHNYF
FTLYALDIESLSLSGNFTGQDARQAMQGHILAEATWHGTYTVTPSLLKK
>Mature_209_residues
MQLTVHGFENGAPIPPQYAFCAPASQGIVSLAKNRNPALSWSDVPEATQSFALIFHDRDVPSKPDDVNQEDRLVPADLPR
VDFFHWVLIDMPASLRAIAEAVDADGVAARGKAPGKTELGVRGINDYTNWFKGDENMEGIYAGYDGPCPPWNDAIVHNYF
FTLYALDIESLSLSGNFTGQDARQAMQGHILAEATWHGTYTVTPSLLKK

Specific function: Unknown

COG id: COG1881

COG function: function code R; Phospholipid-binding protein

Gene ontology:

Cell location: Periplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0098 family [H]

Homologues:

Organism=Escherichia coli, GI1786757, Length=192, Percent_Identity=26.5625, Blast_Score=65, Evalue=2e-12,
Organism=Escherichia coli, GI1786990, Length=196, Percent_Identity=25.5102040816327, Blast_Score=64, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008914
- InterPro:   IPR005247 [H]

Pfam domain/function: PF01161 PBP [H]

EC number: NA

Molecular weight: Translated: 22921; Mature: 22921

Theoretical pI: Translated: 4.60; Mature: 4.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLTVHGFENGAPIPPQYAFCAPASQGIVSLAKNRNPALSWSDVPEATQSFALIFHDRDV
CEEEEECCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCHHHHCEEEEEECCCC
PSKPDDVNQEDRLVPADLPRVDFFHWVLIDMPASLRAIAEAVDADGVAARGKAPGKTELG
CCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VRGINDYTNWFKGDENMEGIYAGYDGPCPPWNDAIVHNYFFTLYALDIESLSLSGNFTGQ
CCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHEEEEEEEEHEEEEECCCCCCH
DARQAMQGHILAEATWHGTYTVTPSLLKK
HHHHHHHCCEEEEEEECCEEEECHHHHCC
>Mature Secondary Structure
MQLTVHGFENGAPIPPQYAFCAPASQGIVSLAKNRNPALSWSDVPEATQSFALIFHDRDV
CEEEEECCCCCCCCCCCCEEECCCHHHHHHHHCCCCCCCCCCCCCHHHHCEEEEEECCCC
PSKPDDVNQEDRLVPADLPRVDFFHWVLIDMPASLRAIAEAVDADGVAARGKAPGKTELG
CCCCCCCCCCCCCCCCCCCCHHHHEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCC
VRGINDYTNWFKGDENMEGIYAGYDGPCPPWNDAIVHNYFFTLYALDIESLSLSGNFTGQ
CCCCCHHHHHHCCCCCCCEEEECCCCCCCCCCCHHHHHHEEEEEEEEHEEEEECCCCCCH
DARQAMQGHILAEATWHGTYTVTPSLLKK
HHHHHHHCCEEEEEEECCEEEECHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]