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The map label for this gene is fni [H]

Identifier: 193214122

GI number: 193214122

Start: 466839

End: 467984

Strand: Direct

Name: fni [H]

Synonym: Ctha_0403

Alternate gene names: 193214122

Gene position: 466839-467984 (Clockwise)

Preceding gene: 193214099

Following gene: 193214123

Centisome position: 14.17

GC content: 44.15

Gene sequence:

>1146_bases
ATGCACAACCGGCACTTTACACGACCGTCAGAGCTAACTGAAATCGTTGAGCGCAAGCAAAGCCATGTAGAGATTTGTTT
GAATGGTCCAATTGATTATGAAAACAAAACCAACGGGTTTGATCATTATTTTTTTGAGCACACTGCCACTCCAGAAGTCA
ATTTTAGCGAAATAGACCTTTCTACAACCTTTTTAGGCCGAAAAATTTCCTATCCTTTGATGATTTCCTCGATGACGGGC
GGATATAGCGGCGCGATGTTCGTCAATCAAATGCTTGCTGAAATTTGCCAGCATTTGAATATTCCGCTTGGCGTTGGCAG
TATGCGCCAAGCTTTAGAGGACAAATCCTACCAGCAAAGTTTTGAAATTGTCAGAAAAGTGGCGCAAAATGTGCAAATTT
TTGCAAACATTGGCGCGCCAGAAGTGGCACAAGGTCTTTCTCGTGATCAGTTAAAATTCCTGACCAATTTGATCAAAGCT
GACGGCCTGATTATACATATTAACCCTGCGCAAGAGCTTTTTCAGCCCGAAGGAAATACGAACTTTAAAGGTTTTCTCAG
CCAATTGAAAGCGCTCATTGATGCCGTGCAAATTCCTGTGATTGCAAAAGAAGTAGGTGCTGGCATTTCGGGAAAGGTTG
CCGCACGATTAATTGATGCTGGCGTTACAGCTATTGATGTGGCAGGCGCAGGCGGAACAAGCTGGCAAAAAGTAGAAAAA
GTTCGCTACGAACGAAAATATGGCATCGATAAGCGCTTCAGTGCAACGGCAATGAATGAGCTTTTGAATTGGGGCATCCC
AACAGCCGAATGCTTGGTGCAAATCACCAAACTAAAAGCCTCTGAACCTGAAAAGTATAATAACATAGAATTGATTTCTT
CAGGAGGAATTTCGAACGGGGTTGAAATTGCGAAATCACTTGCGCTTGGGGCACAAATTGCCGCTTCAGCCAGACCCATT
CTGAAACAACTGCTGGCTCGCGAAGATAGCAGCCAAGACAACTTGGAACGCACCATTATGACTTGGATGAATGACTTGCG
GGCAACCATGTTTCTTGCAGGCGTCTCTTCTATCGCACAGCTACGCCAAACGAAACTGATTTGTCGACAAAGACAGGACT
TTTTCCAAAGTGCCCATGAATTATGA

Upstream 100 bases:

>100_bases
CATATTATCCACACGTTAGTAACCCCTTGTAGCATCGTCCTTTTCTATCTTGACGGAAGATAGCAATAAAAAAAGCAATT
GAACCAACGTTGAAAGAAAT

Downstream 100 bases:

>100_bases
GACACTGATGATTTCACCACCCAGAGTGCTAAAATTTTTTATATTGGCACACAAAATCTCAAAAGAATGCGATTGAACGA
TGCACTTTTAAAAGCCGCTT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MHNRHFTRPSELTEIVERKQSHVEICLNGPIDYENKTNGFDHYFFEHTATPEVNFSEIDLSTTFLGRKISYPLMISSMTG
GYSGAMFVNQMLAEICQHLNIPLGVGSMRQALEDKSYQQSFEIVRKVAQNVQIFANIGAPEVAQGLSRDQLKFLTNLIKA
DGLIIHINPAQELFQPEGNTNFKGFLSQLKALIDAVQIPVIAKEVGAGISGKVAARLIDAGVTAIDVAGAGGTSWQKVEK
VRYERKYGIDKRFSATAMNELLNWGIPTAECLVQITKLKASEPEKYNNIELISSGGISNGVEIAKSLALGAQIAASARPI
LKQLLAREDSSQDNLERTIMTWMNDLRATMFLAGVSSIAQLRQTKLICRQRQDFFQSAHEL

Sequences:

>Translated_381_residues
MHNRHFTRPSELTEIVERKQSHVEICLNGPIDYENKTNGFDHYFFEHTATPEVNFSEIDLSTTFLGRKISYPLMISSMTG
GYSGAMFVNQMLAEICQHLNIPLGVGSMRQALEDKSYQQSFEIVRKVAQNVQIFANIGAPEVAQGLSRDQLKFLTNLIKA
DGLIIHINPAQELFQPEGNTNFKGFLSQLKALIDAVQIPVIAKEVGAGISGKVAARLIDAGVTAIDVAGAGGTSWQKVEK
VRYERKYGIDKRFSATAMNELLNWGIPTAECLVQITKLKASEPEKYNNIELISSGGISNGVEIAKSLALGAQIAASARPI
LKQLLAREDSSQDNLERTIMTWMNDLRATMFLAGVSSIAQLRQTKLICRQRQDFFQSAHEL
>Mature_381_residues
MHNRHFTRPSELTEIVERKQSHVEICLNGPIDYENKTNGFDHYFFEHTATPEVNFSEIDLSTTFLGRKISYPLMISSMTG
GYSGAMFVNQMLAEICQHLNIPLGVGSMRQALEDKSYQQSFEIVRKVAQNVQIFANIGAPEVAQGLSRDQLKFLTNLIKA
DGLIIHINPAQELFQPEGNTNFKGFLSQLKALIDAVQIPVIAKEVGAGISGKVAARLIDAGVTAIDVAGAGGTSWQKVEK
VRYERKYGIDKRFSATAMNELLNWGIPTAECLVQITKLKASEPEKYNNIELISSGGISNGVEIAKSLALGAQIAASARPI
LKQLLAREDSSQDNLERTIMTWMNDLRATMFLAGVSSIAQLRQTKLICRQRQDFFQSAHEL

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 42178; Mature: 42178

Theoretical pI: Translated: 7.24; Mature: 7.24

Prosite motif: PS00591 GLYCOSYL_HYDROL_F10

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNRHFTRPSELTEIVERKQSHVEICLNGPIDYENKTNGFDHYFFEHTATPEVNFSEIDL
CCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCH
STTFLGRKISYPLMISSMTGGYSGAMFVNQMLAEICQHLNIPLGVGSMRQALEDKSYQQS
HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
FEIVRKVAQNVQIFANIGAPEVAQGLSRDQLKFLTNLIKADGLIIHINPAQELFQPEGNT
HHHHHHHHCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCC
NFKGFLSQLKALIDAVQIPVIAKEVGAGISGKVAARLIDAGVTAIDVAGAGGTSWQKVEK
CHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
VRYERKYGIDKRFSATAMNELLNWGIPTAECLVQITKLKASEPEKYNNIELISSGGISNG
HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
VEIAKSLALGAQIAASARPILKQLLAREDSSQDNLERTIMTWMNDLRATMFLAGVSSIAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRQTKLICRQRQDFFQSAHEL
HHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MHNRHFTRPSELTEIVERKQSHVEICLNGPIDYENKTNGFDHYFFEHTATPEVNFSEIDL
CCCCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCEEECCCCCCCCHHHCCH
STTFLGRKISYPLMISSMTGGYSGAMFVNQMLAEICQHLNIPLGVGSMRQALEDKSYQQS
HHHHHCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
FEIVRKVAQNVQIFANIGAPEVAQGLSRDQLKFLTNLIKADGLIIHINPAQELFQPEGNT
HHHHHHHHCCCEEEEECCCHHHHHCCCHHHHHHHHHHHHHCCEEEEECCHHHHHCCCCCC
NFKGFLSQLKALIDAVQIPVIAKEVGAGISGKVAARLIDAGVTAIDVAGAGGTSWQKVEK
CHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHH
VRYERKYGIDKRFSATAMNELLNWGIPTAECLVQITKLKASEPEKYNNIELISSGGISNG
HHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCHH
VEIAKSLALGAQIAASARPILKQLLAREDSSQDNLERTIMTWMNDLRATMFLAGVSSIAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LRQTKLICRQRQDFFQSAHEL
HHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA