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The map label for this gene is crtB [H]

Identifier: 193213959

GI number: 193213959

Start: 286919

End: 287872

Strand: Direct

Name: crtB [H]

Synonym: Ctha_0240

Alternate gene names: 193213959

Gene position: 286919-287872 (Clockwise)

Preceding gene: 193213956

Following gene: 193213960

Centisome position: 8.71

GC content: 43.61

Gene sequence:

>954_bases
ATGCAATTTAATTCGGTCGGGAAAGAATTTGATAAGGTTGATTCGTCAGGGCAAGCTTGCTCTGTTGCCAAAAAAGGGAC
TTCTCAGCATCAAAAAAAAATAGAATCCATTCAGCTCAATCCTGAGGAAGTTAGCGAGTCGTACGAATACTGCCGCGCCG
TTTCAAAACGCCACGCAAAAACCTTTTATTTTGCCACTCAATTTTTACCCAAATCCAAGCGAAAATCCGTTTATGCCGTC
TACGCCTTGTGCCGATATGTAGATGATATTGTCGATCGCGCCGAAGACAAACTCAGTCGCCAAACCCTCACCAAAGAGAA
GATCGTTTTTTTGATTGATAAATGGAAAACAGATCTCGAAGCCTGTTATCGTGGCGAGTTGATTAATAACCCGATTATGA
TCGCCTGGCTCGACACGCTGAAAAAATATCAGATTCCAATGGAATTGCCGTTTGAGCTAATAGAAGGCGTTTGCATGGAT
TTGAAATTCAAGAGTTTTGAAACGTTTGACGAACTTTACATTTATTGCTATAAAGTTGCCTCTGTGGTTGGCCTCATGAC
TTCCGAAATTTTCGGATACAAAAATAAAGAGGCGCTGGACTACGCGATCAAGCTTGGCATCGCCATGCAGCTGACCAACA
TTTTGCGCGATGTGGGCGAAGACAGTCAGCGCGGACGCATTTACCTCCCACTCGAAGACCTTGCGCGATTTAATTATTCG
CCCGAAAAATTAAAACAAGGGACGCTTGATGAAAACTTTATCAAGCTCATGCAGTTTGAAATTGGGCGAGCCCGTGATTT
TTATGCTGAAGCTGATAAAGGAATTCCGATGCTCGACAAAGACAGTCGAATGGCCGTGTTGGTTAGCCGCGTGAATTACA
GCAAAATTCTCACTTACATAGAAAAAACGAGTACGACGTTTTTCGCAAACGCGCGTTCGTTCCTTTCGCCGTAA

Upstream 100 bases:

>100_bases
GTAAGTTTTAGTCCGTTCTTACCTGTAAAGGAAAGCTGTTCCCAACGGTGCGCTTTGCCGCCTTTCTTTTAAATTTTTAC
GTTAAAAAATCTTCTGGCAC

Downstream 100 bases:

>100_bases
AAGCGATGACTTTCCCTGGGATTTGGCTTTCAGCAATGAAGGATTAAGAACATTGTTTAGCAGGTTTATTTCATTTGTAT
TTTTTCAAGCAGTAACCAAG

Product: Squalene/phytoene synthase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 317; Mature: 317

Protein sequence:

>317_residues
MQFNSVGKEFDKVDSSGQACSVAKKGTSQHQKKIESIQLNPEEVSESYEYCRAVSKRHAKTFYFATQFLPKSKRKSVYAV
YALCRYVDDIVDRAEDKLSRQTLTKEKIVFLIDKWKTDLEACYRGELINNPIMIAWLDTLKKYQIPMELPFELIEGVCMD
LKFKSFETFDELYIYCYKVASVVGLMTSEIFGYKNKEALDYAIKLGIAMQLTNILRDVGEDSQRGRIYLPLEDLARFNYS
PEKLKQGTLDENFIKLMQFEIGRARDFYAEADKGIPMLDKDSRMAVLVSRVNYSKILTYIEKTSTTFFANARSFLSP

Sequences:

>Translated_317_residues
MQFNSVGKEFDKVDSSGQACSVAKKGTSQHQKKIESIQLNPEEVSESYEYCRAVSKRHAKTFYFATQFLPKSKRKSVYAV
YALCRYVDDIVDRAEDKLSRQTLTKEKIVFLIDKWKTDLEACYRGELINNPIMIAWLDTLKKYQIPMELPFELIEGVCMD
LKFKSFETFDELYIYCYKVASVVGLMTSEIFGYKNKEALDYAIKLGIAMQLTNILRDVGEDSQRGRIYLPLEDLARFNYS
PEKLKQGTLDENFIKLMQFEIGRARDFYAEADKGIPMLDKDSRMAVLVSRVNYSKILTYIEKTSTTFFANARSFLSP
>Mature_317_residues
MQFNSVGKEFDKVDSSGQACSVAKKGTSQHQKKIESIQLNPEEVSESYEYCRAVSKRHAKTFYFATQFLPKSKRKSVYAV
YALCRYVDDIVDRAEDKLSRQTLTKEKIVFLIDKWKTDLEACYRGELINNPIMIAWLDTLKKYQIPMELPFELIEGVCMD
LKFKSFETFDELYIYCYKVASVVGLMTSEIFGYKNKEALDYAIKLGIAMQLTNILRDVGEDSQRGRIYLPLEDLARFNYS
PEKLKQGTLDENFIKLMQFEIGRARDFYAEADKGIPMLDKDSRMAVLVSRVNYSKILTYIEKTSTTFFANARSFLSP

Specific function: Catalyzes the reaction from prephytoene diphosphate to phytoene [H]

COG id: COG1562

COG function: function code I; Phytoene/squalene synthetase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phytoene/squalene synthase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002060
- InterPro:   IPR019845
- InterPro:   IPR008949 [H]

Pfam domain/function: PF00494 SQS_PSY [H]

EC number: =2.5.1.32 [H]

Molecular weight: Translated: 36673; Mature: 36673

Theoretical pI: Translated: 8.30; Mature: 8.30

Prosite motif: PS01045 SQUALEN_PHYTOEN_SYN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQFNSVGKEFDKVDSSGQACSVAKKGTSQHQKKIESIQLNPEEVSESYEYCRAVSKRHAK
CCCCHHHHHHHHCCCCCCEEHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TFYFATQFLPKSKRKSVYAVYALCRYVDDIVDRAEDKLSRQTLTKEKIVFLIDKWKTDLE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH
ACYRGELINNPIMIAWLDTLKKYQIPMELPFELIEGVCMDLKFKSFETFDELYIYCYKVA
HHHCCHHCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
SVVGLMTSEIFGYKNKEALDYAIKLGIAMQLTNILRDVGEDSQRGRIYLPLEDLARFNYS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHCCCC
PEKLKQGTLDENFIKLMQFEIGRARDFYAEADKGIPMLDKDSRMAVLVSRVNYSKILTYI
HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EKTSTTFFANARSFLSP
HHHCCHHHHCCHHHCCC
>Mature Secondary Structure
MQFNSVGKEFDKVDSSGQACSVAKKGTSQHQKKIESIQLNPEEVSESYEYCRAVSKRHAK
CCCCHHHHHHHHCCCCCCEEHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
TFYFATQFLPKSKRKSVYAVYALCRYVDDIVDRAEDKLSRQTLTKEKIVFLIDKWKTDLE
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH
ACYRGELINNPIMIAWLDTLKKYQIPMELPFELIEGVCMDLKFKSFETFDELYIYCYKVA
HHHCCHHCCCCEEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
SVVGLMTSEIFGYKNKEALDYAIKLGIAMQLTNILRDVGEDSQRGRIYLPLEDLARFNYS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHHHHCCCC
PEKLKQGTLDENFIKLMQFEIGRARDFYAEADKGIPMLDKDSRMAVLVSRVNYSKILTYI
HHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
EKTSTTFFANARSFLSP
HHHCCHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA