| Definition | Chloroherpeton thalassium ATCC 35110 chromosome, complete genome. |
|---|---|
| Accession | NC_011026 |
| Length | 3,293,456 |
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The map label for this gene is dsbD [H]
Identifier: 193213952
GI number: 193213952
Start: 278096
End: 280258
Strand: Direct
Name: dsbD [H]
Synonym: Ctha_0233
Alternate gene names: 193213952
Gene position: 278096-280258 (Clockwise)
Preceding gene: 193213949
Following gene: 193213953
Centisome position: 8.44
GC content: 53.63
Gene sequence:
>2163_bases ATGTTAAAAAGACCCTTCAAAAACGCGTTTTGGTTTACTGCGTTTTTTTCTGTTCTCAGCCTATTTTTTGCAAAAAACGC CGCCGCGCAGTTTCCCGATTTCGGCGACGGAAAGAAACTCGTGCAGCCAAGTTTGGTAGTCGGCACGGAGAATTTTCGCG AGCCGTTTATCATTGGCATTCGCTTTAAGCTTGAGCCGGAATGGCATATTTATTGGAAAAATGCGGGCGACGCTGGTACG CCAGTTGAAGTCGAGTGGAACTTGCCCGACGGCTTCCGCGTGAGCGAGCTGGACTATCCCGTGCCGATAAAGTTTGTGCT GAGCGGCGTTGTCGGCTACGGCTACACCGACGAGGTCGTGCTTTTGGCAAAAGTTGAGCCGCCGAAAAATTATTCCCCGA AAAAAGCGCCGGAAATTTCCGCCAAGCTGAGCTGGCTCGTTTGCCGCGAATCGTGCATTCCTGGCGAAGGCGAAGTTTCC TTAAACCTTGAAACACTTTCCCAAAAAGACGTCGCCGAAGGCAAAAAGCTGATTGAAAAATTTGAGGCGAAATTGCCCGG CCAATCCGGCAATTTGGACATCAAGCTTGAGCAGGCCGTAGCCAAAGGGTCAGGGAAAAATGTGACCGCTGAGCTTCGCT TTTCGGGAAAGCAGGCTTCCGAAATTACTGACTTTTTCCCCGACATTTTGGAAAATGCGTTCATCGGCTACAACGATATT CAGGTGGCAAACAACACGATTTCCTTCCCGATGCAGCTTTCAGCGCCGGACGCCGAACTGCCGGAAATTCGCGGGCTGCT CGTCACCGAAACGCACGGCTATGAATTTTCCGCGACGCTCAAGGCTGCAACTGAAAGCTTGCTTGATGATTCGTTTCAAG TCGCAGGCGAGCGACCGGACGAGTCGCCGCTTTGGATGATTTTGCTGTTGGCGTTCGTGGGCGGGCTGTTGCTGAACATC ATGCCGTGCGTGTTGCCGGTGCTCTCGCTCAAGGTGCTGAGCTTTGTCGAACATTCATCGATGGAAAAATCGCATACGCG ATATTTGAGCTTCATTTTTGCGCTCGGCGTGTTGGTGTCGTTTTGGGTCTTGGCGCTCGGCGTGGGCGTTTTGCAAAACG CAGGCGAGCAAATCGGTTGGGGTTTTCAATTTCAATCGCCTTGGTTTGTCGTTGGCATGTCGGTGGTGGTGTTCATTTTT GGGATGAACCTCGTGGGCGTGTTTGAATTCGCCTCGCCGAATGTCACGGGCGATGTCAGCAAAACGCTGAGCCGCCACGA TGCGCTGGGCGCGTTTATGAACGGCGTGCTGGCCACCACGCTGGCCACGCCTTGCACCGCGCCGTTTCTCGGCACGGCGC TCGGCTTCGCGTTTTCGCAACCGTTCTATATGATTTTCTTGATTTTCAGCCTTGTGGCGCTCGGGCTGGCCGCGCCGTAT GTGATTTTATCGCTCAATCCCGCGTGGCTGAAATTCATCCCGAAGCCGGGCGTTTGGATGGAGCGATTCAAGCAAGCGAT GGGCTTTTTGCTTTTCGCCACGCTGGTTTGGTTGCTCTCGGTGCTTGGCAGCCAGACGGGCGCAACGGGCATCTTGGCCG CGCTGACCTTGCTGCTGGGCGTCTCCGTCGGGCTGTGGCTCATCGGCGCGTTCATCGATTACGGCACACCGGCCACGAAA AAATTCATGATTTGGGGAATCGCCCTCTTGCTTGCGGGAGCGAGTTATTATTTAGGATTTGAAAAATGGTTTCCGATTCG TGAGACGGCGCAAACGCAAACGGAGGCCGCAAAACCGCACGATGGACTCATCGACTGGAAGCCGTTTTCCATTGCGACGG TTGAAAAGGAGGTTTCGGCGGGAAAACCGGTGTTTATCGATTTCACCGCCGATTGGTGCTTTACTTGCAAAGTGACCGAA CAAACCGTGCTGCACACCGACGCCGTGAGCGGGAAAATCAAGGAACTCGGCATCGTCCCGATTCGCGCGGATTGGACGAA TCGCAACGACGAAATCACCGGCCTGCTCAAAAAATTCGGGCGTTCCGGCGTGCCGCTTTATGTCGTGTTTCCGGCGGGAA AATTGTCCGAACCGATTGTCCTTCCCGAAGTCGTGACGCCAGAGCTTTTAATCGAAGCATTTGAAAAGGCCGTTTCGAAA TAA
Upstream 100 bases:
>100_bases GTTTATGTCGTACCCTAAAAAAGGTAACGTAACCCCCGCGAAGTTCGTTGTATGCTAAGAAAATTAGAAACATAAAAACC GCTTAAAACAAAAATCAACA
Downstream 100 bases:
>100_bases ATAAAAATCGTAACAGGTATTATTCTTAATCGTTATAAACCGAGAAAGAATAATACCTGAAATTTTTAACGAGTTATTTT ATGAGCTATCAAAAATTGAA
Product: cytochrome c biogenesis protein transmembrane region
Products: NA
Alternate protein names: Protein-disulfide reductase; Disulfide reductase [H]
Number of amino acids: Translated: 720; Mature: 720
Protein sequence:
>720_residues MLKRPFKNAFWFTAFFSVLSLFFAKNAAAQFPDFGDGKKLVQPSLVVGTENFREPFIIGIRFKLEPEWHIYWKNAGDAGT PVEVEWNLPDGFRVSELDYPVPIKFVLSGVVGYGYTDEVVLLAKVEPPKNYSPKKAPEISAKLSWLVCRESCIPGEGEVS LNLETLSQKDVAEGKKLIEKFEAKLPGQSGNLDIKLEQAVAKGSGKNVTAELRFSGKQASEITDFFPDILENAFIGYNDI QVANNTISFPMQLSAPDAELPEIRGLLVTETHGYEFSATLKAATESLLDDSFQVAGERPDESPLWMILLLAFVGGLLLNI MPCVLPVLSLKVLSFVEHSSMEKSHTRYLSFIFALGVLVSFWVLALGVGVLQNAGEQIGWGFQFQSPWFVVGMSVVVFIF GMNLVGVFEFASPNVTGDVSKTLSRHDALGAFMNGVLATTLATPCTAPFLGTALGFAFSQPFYMIFLIFSLVALGLAAPY VILSLNPAWLKFIPKPGVWMERFKQAMGFLLFATLVWLLSVLGSQTGATGILAALTLLLGVSVGLWLIGAFIDYGTPATK KFMIWGIALLLAGASYYLGFEKWFPIRETAQTQTEAAKPHDGLIDWKPFSIATVEKEVSAGKPVFIDFTADWCFTCKVTE QTVLHTDAVSGKIKELGIVPIRADWTNRNDEITGLLKKFGRSGVPLYVVFPAGKLSEPIVLPEVVTPELLIEAFEKAVSK
Sequences:
>Translated_720_residues MLKRPFKNAFWFTAFFSVLSLFFAKNAAAQFPDFGDGKKLVQPSLVVGTENFREPFIIGIRFKLEPEWHIYWKNAGDAGT PVEVEWNLPDGFRVSELDYPVPIKFVLSGVVGYGYTDEVVLLAKVEPPKNYSPKKAPEISAKLSWLVCRESCIPGEGEVS LNLETLSQKDVAEGKKLIEKFEAKLPGQSGNLDIKLEQAVAKGSGKNVTAELRFSGKQASEITDFFPDILENAFIGYNDI QVANNTISFPMQLSAPDAELPEIRGLLVTETHGYEFSATLKAATESLLDDSFQVAGERPDESPLWMILLLAFVGGLLLNI MPCVLPVLSLKVLSFVEHSSMEKSHTRYLSFIFALGVLVSFWVLALGVGVLQNAGEQIGWGFQFQSPWFVVGMSVVVFIF GMNLVGVFEFASPNVTGDVSKTLSRHDALGAFMNGVLATTLATPCTAPFLGTALGFAFSQPFYMIFLIFSLVALGLAAPY VILSLNPAWLKFIPKPGVWMERFKQAMGFLLFATLVWLLSVLGSQTGATGILAALTLLLGVSVGLWLIGAFIDYGTPATK KFMIWGIALLLAGASYYLGFEKWFPIRETAQTQTEAAKPHDGLIDWKPFSIATVEKEVSAGKPVFIDFTADWCFTCKVTE QTVLHTDAVSGKIKELGIVPIRADWTNRNDEITGLLKKFGRSGVPLYVVFPAGKLSEPIVLPEVVTPELLIEAFEKAVSK >Mature_720_residues MLKRPFKNAFWFTAFFSVLSLFFAKNAAAQFPDFGDGKKLVQPSLVVGTENFREPFIIGIRFKLEPEWHIYWKNAGDAGT PVEVEWNLPDGFRVSELDYPVPIKFVLSGVVGYGYTDEVVLLAKVEPPKNYSPKKAPEISAKLSWLVCRESCIPGEGEVS LNLETLSQKDVAEGKKLIEKFEAKLPGQSGNLDIKLEQAVAKGSGKNVTAELRFSGKQASEITDFFPDILENAFIGYNDI QVANNTISFPMQLSAPDAELPEIRGLLVTETHGYEFSATLKAATESLLDDSFQVAGERPDESPLWMILLLAFVGGLLLNI MPCVLPVLSLKVLSFVEHSSMEKSHTRYLSFIFALGVLVSFWVLALGVGVLQNAGEQIGWGFQFQSPWFVVGMSVVVFIF GMNLVGVFEFASPNVTGDVSKTLSRHDALGAFMNGVLATTLATPCTAPFLGTALGFAFSQPFYMIFLIFSLVALGLAAPY VILSLNPAWLKFIPKPGVWMERFKQAMGFLLFATLVWLLSVLGSQTGATGILAALTLLLGVSVGLWLIGAFIDYGTPATK KFMIWGIALLLAGASYYLGFEKWFPIRETAQTQTEAAKPHDGLIDWKPFSIATVEKEVSAGKPVFIDFTADWCFTCKVTE QTVLHTDAVSGKIKELGIVPIRADWTNRNDEITGLLKKFGRSGVPLYVVFPAGKLSEPIVLPEVVTPELLIEAFEKAVSK
Specific function: Required to facilitate the formation of correct disulfide bonds in some periplasmic proteins and for the assembly of the periplasmic c-type cytochromes. Acts by transferring electrons from cytoplasmic thioredoxin to the periplasm. This transfer involves a
COG id: COG4232
COG function: function code OC; Thiol:disulfide interchange protein
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 thioredoxin domain [H]
Homologues:
Organism=Escherichia coli, GI1790578, Length=409, Percent_Identity=28.361858190709, Blast_Score=104, Evalue=2e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003834 - InterPro: IPR022910 - InterPro: IPR005746 - InterPro: IPR017936 - InterPro: IPR012336 - InterPro: IPR017937 - InterPro: IPR013766 - InterPro: IPR012335 [H]
Pfam domain/function: PF02683 DsbD; PF00085 Thioredoxin [H]
EC number: =1.8.1.8 [H]
Molecular weight: Translated: 78980; Mature: 78980
Theoretical pI: Translated: 5.14; Mature: 5.14
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKRPFKNAFWFTAFFSVLSLFFAKNAAAQFPDFGDGKKLVQPSLVVGTENFREPFIIGI CCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHCCCEEEECCCCCCCCEEEEE RFKLEPEWHIYWKNAGDAGTPVEVEWNLPDGFRVSELDYPVPIKFVLSGVVGYGYTDEVV EEEECCCEEEEEECCCCCCCCEEEEECCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCEE LLAKVEPPKNYSPKKAPEISAKLSWLVCRESCIPGEGEVSLNLETLSQKDVAEGKKLIEK EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHCHHHHHHHHHHHHH FEAKLPGQSGNLDIKLEQAVAKGSGKNVTAELRFSGKQASEITDFFPDILENAFIGYNDI HHHHCCCCCCCEEEEEHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCE QVANNTISFPMQLSAPDAELPEIRGLLVTETHGYEFSATLKAATESLLDDSFQVAGERPD EEECCEEECCEEECCCCCCCCHHCCEEEEECCCCEEEHHHHHHHHHHHCCHHHHCCCCCC ESPLWMILLLAFVGGLLLNIMPCVLPVLSLKVLSFVEHSSMEKSHTRYLSFIFALGVLVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH FWVLALGVGVLQNAGEQIGWGFQFQSPWFVVGMSVVVFIFGMNLVGVFEFASPNVTGDVS HHHHHHHHHHHHCCCHHCCCCEEECCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCCHHH KTLSRHDALGAFMNGVLATTLATPCTAPFLGTALGFAFSQPFYMIFLIFSLVALGLAAPY HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCE VILSLNPAWLKFIPKPGVWMERFKQAMGFLLFATLVWLLSVLGSQTGATGILAALTLLLG EEEECCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH VSVGLWLIGAFIDYGTPATKKFMIWGIALLLAGASYYLGFEKWFPIRETAQTQTEAAKPH HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHCCHHHCCCCHHHHHHHHHCCCCC DGLIDWKPFSIATVEKEVSAGKPVFIDFTADWCFTCKVTEQTVLHTDAVSGKIKELGIVP CCCCCCCCCEEEEEHHHHCCCCCEEEEEECCEEEEEEECCCCEEEHHHCCCCHHHCCEEE IRADWTNRNDEITGLLKKFGRSGVPLYVVFPAGKLSEPIVLPEVVTPELLIEAFEKAVSK EEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHCC >Mature Secondary Structure MLKRPFKNAFWFTAFFSVLSLFFAKNAAAQFPDFGDGKKLVQPSLVVGTENFREPFIIGI CCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCHHCCCEEEECCCCCCCCEEEEE RFKLEPEWHIYWKNAGDAGTPVEVEWNLPDGFRVSELDYPVPIKFVLSGVVGYGYTDEVV EEEECCCEEEEEECCCCCCCCEEEEECCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCEE LLAKVEPPKNYSPKKAPEISAKLSWLVCRESCIPGEGEVSLNLETLSQKDVAEGKKLIEK EEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEHHHHCHHHHHHHHHHHHH FEAKLPGQSGNLDIKLEQAVAKGSGKNVTAELRFSGKQASEITDFFPDILENAFIGYNDI HHHHCCCCCCCEEEEEHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCE QVANNTISFPMQLSAPDAELPEIRGLLVTETHGYEFSATLKAATESLLDDSFQVAGERPD EEECCEEECCEEECCCCCCCCHHCCEEEEECCCCEEEHHHHHHHHHHHCCHHHHCCCCCC ESPLWMILLLAFVGGLLLNIMPCVLPVLSLKVLSFVEHSSMEKSHTRYLSFIFALGVLVS CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH FWVLALGVGVLQNAGEQIGWGFQFQSPWFVVGMSVVVFIFGMNLVGVFEFASPNVTGDVS HHHHHHHHHHHHCCCHHCCCCEEECCCHHHHHHHHHHHHHHCHHHEEEEECCCCCCCHHH KTLSRHDALGAFMNGVLATTLATPCTAPFLGTALGFAFSQPFYMIFLIFSLVALGLAAPY HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCE VILSLNPAWLKFIPKPGVWMERFKQAMGFLLFATLVWLLSVLGSQTGATGILAALTLLLG EEEECCHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH VSVGLWLIGAFIDYGTPATKKFMIWGIALLLAGASYYLGFEKWFPIRETAQTQTEAAKPH HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHCCHHHCCCCHHHHHHHHHCCCCC DGLIDWKPFSIATVEKEVSAGKPVFIDFTADWCFTCKVTEQTVLHTDAVSGKIKELGIVP CCCCCCCCCEEEEEHHHHCCCCCEEEEEECCEEEEEEECCCCEEEHHHCCCCHHHCCEEE IRADWTNRNDEITGLLKKFGRSGVPLYVVFPAGKLSEPIVLPEVVTPELLIEAFEKAVSK EEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCEECCCCCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]