| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291566
Identifier: 192291566
GI number: 192291566
Start: 3439324
End: 3440961
Strand: Reverse
Name: 192291566
Synonym: Rpal_3193
Alternate gene names: NA
Gene position: 3440961-3439324 (Counterclockwise)
Preceding gene: 192291567
Following gene: 192291565
Centisome position: 59.9
GC content: 70.09
Gene sequence:
>1638_bases ATGGGACGCGACATCACGATGACGGATCGATATCAGAGCCGACCTTTTCCGCTGGACGATGACGACAGCCGGGCATCGTC CCGCTATCCGCAGAAGCCGGAAAACGATCCGCTCGCCGAACTCGCGCGCCTGATCGGTCAGACCGATCCTTTCGGCCAGG CTGCTCCGCGTGCCGAGCCGGCGCCGCCGGTTGCGCCGCAGACGCGCTCCACCGATTTCCGCGCCAGCCGTCCGGTGCCG CCGCAGGCGGAAGACGAGTCGTCGCCGCCGATGCCGTCATGGATGCAGCATCGCCAGACCGCGCGCGCGCCTGAGCCGCA GCGCACCCAGGAACCGACCTTCGCACCGGAGCCGGATTTCAGCAGGCCGCCGTCATTTATCAATGCGGCTCCGCCGCGTC GCGCCCAGGCTCCGAGCTTCGAGCGCGCGCCGGCGATCCAGCCGCCGATCGATCCGAACCCGCTGCAGATGCGGCCGCTC GAACAGCCGGCGATGGATCTGCGCTCGCTCGATCCGCGGTTCGACCCGGCACCGCCAGAGCAGCGGCAGCTCGATCTGCC GCAGCCCGATCGCGTGCACTACGAACCGCCATTCGAGCCGCTTCCCGCGACGTCGCTGGAGCCCGATCGCTACGACGAGG CGCTGTACGGTCAGCTTCCGGCTGATCCCGCGCCGGTCGGTGGCTATCAGGAGTCGCCGTACGGATACGAAGACGGCTAT GACGATCAGGCCGATCAACGCGCACTGAAGCCGCGCCGCAATACGATGCTGACGGTGGTGGGGATCCTCGCGCTTGCGGT GGTCGGCACCGGTGGCGCGTTGGCGTATCGCACCTTCGCCGGCACCACGCGCACCGGCGAGCCGCCGGTGATCAAGGCCG ATACCAGCCCGACCAAGGTTCCGGGCCCGTCGAACGACAACGCCGGCAAGCCGATCCAGGATCGGCTCGCTTCCAGCAAT GGCGTCGAAGCGCTGGTGTCGCGGGAAGAACAGCCCGCCGCTGATCCGTCGCGGATGCCCGGTTCGGGCCCGCGGGTTGT GCTGCCGCAGCTCAACCAGAACCCCAATCCGCCGCCGGTCGCGAGCGTCGCGCCGGGCGCCAAGCCGAACCTGCCGCCGC CCCCGAACAACGGCACGCTGGCGGGCGACGAGCCGCGCAAGATCAAGACCTACAGCATCCGCCCGGATCAGGCCGATGCG GCGGCTCAGCCAGCCGGTGCGGCCCGTGCCGCGGCGCCCGCCGCCCGGACGCCCGGACGCGGCGTCGCCGATGCCAACGC GTCTGCCGGCAACGCGCCGCTGTCGCTGTCGCCGAATTCGGCCGAGACCCCGGCTCCGCGGCCGCAGCGCGTCGCCTCGG CGCCGCCCTCCGAGCCCGCCGCCACCTCCGGCGGCTACGTCGTCCAGGTGTCGTCGCAGCGCAACGAGGCCGAGGCCAAG GCGTCGTACCGCAGCCTGCAGAGCAAGTTCCCATCTGTGCTTGGATCGCAGCCGCCGCTGATCAAGCGGGTCGATCTCGG CAGCAAGGGCACCTACTACCGCGCGATGGTCGGACCGTTCTCGTCCGCCGAGCAGGCCCAGCAGGTCTGCGGCAACCTAA AAAGTGCCGGCGGACAGTGCGTCGTCCAGAGGAATTAA
Upstream 100 bases:
>100_bases GGACGAGATGCGATAGGGGATCGGCCGTCAGATGGGGATCTGGAGCGGCTTGTGAGAGCGGCCGTGTCGTCTGCGAAGGC GCCTTGGGCAGCTTTCCCGA
Downstream 100 bases:
>100_bases CGGCGGTTTCCTTGACCCTGGAGGCACGCGCGGGCTAAGCGGCCATGTATGGCACCGCGCGCTTTCATCACCGGTATTGC CGGCCTTAGCCTCAGCGACG
Product: Sporulation domain-containing protein
Products: NA
Alternate protein names: Sporulation Domain Protein; Sporulation ; Proline-Rich Protein; Proline-Rich Region
Number of amino acids: Translated: 545; Mature: 544
Protein sequence:
>545_residues MGRDITMTDRYQSRPFPLDDDDSRASSRYPQKPENDPLAELARLIGQTDPFGQAAPRAEPAPPVAPQTRSTDFRASRPVP PQAEDESSPPMPSWMQHRQTARAPEPQRTQEPTFAPEPDFSRPPSFINAAPPRRAQAPSFERAPAIQPPIDPNPLQMRPL EQPAMDLRSLDPRFDPAPPEQRQLDLPQPDRVHYEPPFEPLPATSLEPDRYDEALYGQLPADPAPVGGYQESPYGYEDGY DDQADQRALKPRRNTMLTVVGILALAVVGTGGALAYRTFAGTTRTGEPPVIKADTSPTKVPGPSNDNAGKPIQDRLASSN GVEALVSREEQPAADPSRMPGSGPRVVLPQLNQNPNPPPVASVAPGAKPNLPPPPNNGTLAGDEPRKIKTYSIRPDQADA AAQPAGAARAAAPAARTPGRGVADANASAGNAPLSLSPNSAETPAPRPQRVASAPPSEPAATSGGYVVQVSSQRNEAEAK ASYRSLQSKFPSVLGSQPPLIKRVDLGSKGTYYRAMVGPFSSAEQAQQVCGNLKSAGGQCVVQRN
Sequences:
>Translated_545_residues MGRDITMTDRYQSRPFPLDDDDSRASSRYPQKPENDPLAELARLIGQTDPFGQAAPRAEPAPPVAPQTRSTDFRASRPVP PQAEDESSPPMPSWMQHRQTARAPEPQRTQEPTFAPEPDFSRPPSFINAAPPRRAQAPSFERAPAIQPPIDPNPLQMRPL EQPAMDLRSLDPRFDPAPPEQRQLDLPQPDRVHYEPPFEPLPATSLEPDRYDEALYGQLPADPAPVGGYQESPYGYEDGY DDQADQRALKPRRNTMLTVVGILALAVVGTGGALAYRTFAGTTRTGEPPVIKADTSPTKVPGPSNDNAGKPIQDRLASSN GVEALVSREEQPAADPSRMPGSGPRVVLPQLNQNPNPPPVASVAPGAKPNLPPPPNNGTLAGDEPRKIKTYSIRPDQADA AAQPAGAARAAAPAARTPGRGVADANASAGNAPLSLSPNSAETPAPRPQRVASAPPSEPAATSGGYVVQVSSQRNEAEAK ASYRSLQSKFPSVLGSQPPLIKRVDLGSKGTYYRAMVGPFSSAEQAQQVCGNLKSAGGQCVVQRN >Mature_544_residues GRDITMTDRYQSRPFPLDDDDSRASSRYPQKPENDPLAELARLIGQTDPFGQAAPRAEPAPPVAPQTRSTDFRASRPVPP QAEDESSPPMPSWMQHRQTARAPEPQRTQEPTFAPEPDFSRPPSFINAAPPRRAQAPSFERAPAIQPPIDPNPLQMRPLE QPAMDLRSLDPRFDPAPPEQRQLDLPQPDRVHYEPPFEPLPATSLEPDRYDEALYGQLPADPAPVGGYQESPYGYEDGYD DQADQRALKPRRNTMLTVVGILALAVVGTGGALAYRTFAGTTRTGEPPVIKADTSPTKVPGPSNDNAGKPIQDRLASSNG VEALVSREEQPAADPSRMPGSGPRVVLPQLNQNPNPPPVASVAPGAKPNLPPPPNNGTLAGDEPRKIKTYSIRPDQADAA AQPAGAARAAAPAARTPGRGVADANASAGNAPLSLSPNSAETPAPRPQRVASAPPSEPAATSGGYVVQVSSQRNEAEAKA SYRSLQSKFPSVLGSQPPLIKRVDLGSKGTYYRAMVGPFSSAEQAQQVCGNLKSAGGQCVVQRN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 58098; Mature: 57967
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGRDITMTDRYQSRPFPLDDDDSRASSRYPQKPENDPLAELARLIGQTDPFGQAAPRAEP CCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC APPVAPQTRSTDFRASRPVPPQAEDESSPPMPSWMQHRQTARAPEPQRTQEPTFAPEPDF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC SRPPSFINAAPPRRAQAPSFERAPAIQPPIDPNPLQMRPLEQPAMDLRSLDPRFDPAPPE CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCH QRQLDLPQPDRVHYEPPFEPLPATSLEPDRYDEALYGQLPADPAPVGGYQESPYGYEDGY HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC DDQADQRALKPRRNTMLTVVGILALAVVGTGGALAYRTFAGTTRTGEPPVIKADTSPTKV CCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCC PGPSNDNAGKPIQDRLASSNGVEALVSREEQPAADPSRMPGSGPRVVLPQLNQNPNPPPV CCCCCCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC ASVAPGAKPNLPPPPNNGTLAGDEPRKIKTYSIRPDQADAAAQPAGAARAAAPAARTPGR CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCCCCCC GVADANASAGNAPLSLSPNSAETPAPRPQRVASAPPSEPAATSGGYVVQVSSQRNEAEAK CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHH ASYRSLQSKFPSVLGSQPPLIKRVDLGSKGTYYRAMVGPFSSAEQAQQVCGNLKSAGGQC HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEE VVQRN EEECC >Mature Secondary Structure GRDITMTDRYQSRPFPLDDDDSRASSRYPQKPENDPLAELARLIGQTDPFGQAAPRAEP CCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCC APPVAPQTRSTDFRASRPVPPQAEDESSPPMPSWMQHRQTARAPEPQRTQEPTFAPEPDF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCC SRPPSFINAAPPRRAQAPSFERAPAIQPPIDPNPLQMRPLEQPAMDLRSLDPRFDPAPPE CCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCH QRQLDLPQPDRVHYEPPFEPLPATSLEPDRYDEALYGQLPADPAPVGGYQESPYGYEDGY HCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC DDQADQRALKPRRNTMLTVVGILALAVVGTGGALAYRTFAGTTRTGEPPVIKADTSPTKV CCHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCC PGPSNDNAGKPIQDRLASSNGVEALVSREEQPAADPSRMPGSGPRVVLPQLNQNPNPPPV CCCCCCCCCCCHHHHHCCCCCHHHHHHCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC ASVAPGAKPNLPPPPNNGTLAGDEPRKIKTYSIRPDQADAAAQPAGAARAAAPAARTPGR CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHCCCCCHHHHCCCCCCCCCC GVADANASAGNAPLSLSPNSAETPAPRPQRVASAPPSEPAATSGGYVVQVSSQRNEAEAK CCCCCCCCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHH ASYRSLQSKFPSVLGSQPPLIKRVDLGSKGTYYRAMVGPFSSAEQAQQVCGNLKSAGGQC HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEE VVQRN EEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA