Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192291418

Identifier: 192291418

GI number: 192291418

Start: 3294854

End: 3295150

Strand: Reverse

Name: 192291418

Synonym: Rpal_3042

Alternate gene names: NA

Gene position: 3295150-3294854 (Counterclockwise)

Preceding gene: 192291419

Following gene: 192291417

Centisome position: 57.37

GC content: 67.0

Gene sequence:

>297_bases
ATGCCCACTGACCAGTTCACCAATCCGGCCGACTTCCTGATCCTCTCTGATGGATCGGTTTCGCTCCGCAACGTGATGCG
GGCCGCGCACCAGAAGGCGCGGCGCCGGGCTGCTGAATACGCCGAGTGGTCGGCTCGGCAAGACCCCCGCGACCAACTCG
CCGTCCCCTATTCGCAGTTCTTCGCGGAGGCGATCCGCTGGGCATGGGACCGCGTCCGCATCACCCGAAACCTCATCCGC
GAACGCGGCTGGCACTGGTACCAGCCGGAAAGCGTCGCCCTCCCCCTCGCCGCCTGA

Upstream 100 bases:

>100_bases
GCCCCCTGGCCGTGGTTATTGCCGCGTCGTGCGCGATAACTTTTCTTATTGACAGTGTGATAACCTACGTTATTGTTTCC
CCATAGCCCAGGGGAAACCG

Downstream 100 bases:

>100_bases
CAGGAACTAACAGCTATGAAATCCGCCTTGAAACGAGCTGGACTAATCGCCCTCACTATCTCCGGCGTTGCGCTCTGGCT
TTGGCTCGCCATCCCGGCAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 97

Protein sequence:

>98_residues
MPTDQFTNPADFLILSDGSVSLRNVMRAAHQKARRRAAEYAEWSARQDPRDQLAVPYSQFFAEAIRWAWDRVRITRNLIR
ERGWHWYQPESVALPLAA

Sequences:

>Translated_98_residues
MPTDQFTNPADFLILSDGSVSLRNVMRAAHQKARRRAAEYAEWSARQDPRDQLAVPYSQFFAEAIRWAWDRVRITRNLIR
ERGWHWYQPESVALPLAA
>Mature_97_residues
PTDQFTNPADFLILSDGSVSLRNVMRAAHQKARRRAAEYAEWSARQDPRDQLAVPYSQFFAEAIRWAWDRVRITRNLIRE
RGWHWYQPESVALPLAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11499; Mature: 11368

Theoretical pI: Translated: 10.24; Mature: 10.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDQFTNPADFLILSDGSVSLRNVMRAAHQKARRRAAEYAEWSARQDPRDQLAVPYSQF
CCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHH
FAEAIRWAWDRVRITRNLIRERGWHWYQPESVALPLAA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
PTDQFTNPADFLILSDGSVSLRNVMRAAHQKARRRAAEYAEWSARQDPRDQLAVPYSQF
CCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCHHHH
FAEAIRWAWDRVRITRNLIRERGWHWYQPESVALPLAA
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA