| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291408
Identifier: 192291408
GI number: 192291408
Start: 3291088
End: 3291714
Strand: Reverse
Name: 192291408
Synonym: Rpal_3032
Alternate gene names: NA
Gene position: 3291714-3291088 (Counterclockwise)
Preceding gene: 192291409
Following gene: 192291407
Centisome position: 57.31
GC content: 61.08
Gene sequence:
>627_bases ATGGCAATCGAGATTTTCGACGTCGAGCAGAATTCGCCCGAGTGGCTCCGCGCCCGCATGGGCATTCCGACCGCCTCAGA ATTTGAGGCGATCATCACGCCCGGGAAGACGAAGGCCGAGCAGAAAACCCGCCGCACCTACATGCTGAAACTCGCCGGCG AGCTTCTGACTAACGAGCCGATGGGATCGGCGAACACAAAGGACATGCAGCGCGGCCACGCGCTGGAAGACGAGGCGCGC GACCTGTACCAATTCCTAACCGGCGCAGAGACGCGCCGCGTCGGCTTCATCCGCAACGGCCGCGCCGGCTGTTCGCCGGA CAGCCTGATCGGCGAGGACGGCGGCCTTGAGATCAAGACCAAGGCGCCGCACCTGTTACTTGACGTCATCATGAAAGATG AATTTCCGGAGGAACACAAAGCCCAGGTTCAGGGCGCACTTTGGCTAACGAACCGCGAATGGTGGGACATCGCCGTTTAC TGGCGCAATCTTCCGCTTTTCATCAAGCGGGCCTATCGGGACGAGCCCTATATCCAACGCCTCGCGACTGAGGTTGATCG GTTCAACGCCGAGCTTGATGCGATCGTCGCCGAGATCCGGCTCCGTGGTGAGGCGCTGGCAGCATGA
Upstream 100 bases:
>100_bases GCCGCGGAACTGGTCGCGCCGGAAGTGGCCGACCGCCTGATTGACGCCATCACCGCCGGCCGCATCCCCCACCTGTCTAT CACCTACTGAGGCCGCAGCA
Downstream 100 bases:
>100_bases CACGCATCAAACGAAGCGGGCCGCCAAGCACCCGCAACCTCGAAGCTGCTGACCTGATCAGCAGGGCAACTGCGGTCTGC GAGAAATGCAGAACCGATTG
Product: exonuclease, phage-type
Products: NA
Alternate protein names: Phage-Related Exonuclease; Phage-Type Endonuclease; Bacteriophage Exonuclease; Phage Related Protein; Exonuclease Phage-Type; Phage Related Exonuclease; Exonuclease Phage Origin; Phage-Like Protein; Exodeoxyribonuclease
Number of amino acids: Translated: 208; Mature: 207
Protein sequence:
>208_residues MAIEIFDVEQNSPEWLRARMGIPTASEFEAIITPGKTKAEQKTRRTYMLKLAGELLTNEPMGSANTKDMQRGHALEDEAR DLYQFLTGAETRRVGFIRNGRAGCSPDSLIGEDGGLEIKTKAPHLLLDVIMKDEFPEEHKAQVQGALWLTNREWWDIAVY WRNLPLFIKRAYRDEPYIQRLATEVDRFNAELDAIVAEIRLRGEALAA
Sequences:
>Translated_208_residues MAIEIFDVEQNSPEWLRARMGIPTASEFEAIITPGKTKAEQKTRRTYMLKLAGELLTNEPMGSANTKDMQRGHALEDEAR DLYQFLTGAETRRVGFIRNGRAGCSPDSLIGEDGGLEIKTKAPHLLLDVIMKDEFPEEHKAQVQGALWLTNREWWDIAVY WRNLPLFIKRAYRDEPYIQRLATEVDRFNAELDAIVAEIRLRGEALAA >Mature_207_residues AIEIFDVEQNSPEWLRARMGIPTASEFEAIITPGKTKAEQKTRRTYMLKLAGELLTNEPMGSANTKDMQRGHALEDEARD LYQFLTGAETRRVGFIRNGRAGCSPDSLIGEDGGLEIKTKAPHLLLDVIMKDEFPEEHKAQVQGALWLTNREWWDIAVYW RNLPLFIKRAYRDEPYIQRLATEVDRFNAELDAIVAEIRLRGEALAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23718; Mature: 23587
Theoretical pI: Translated: 5.04; Mature: 5.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIEIFDVEQNSPEWLRARMGIPTASEFEAIITPGKTKAEQKTRRTYMLKLAGELLTNEP CEEEEEECCCCCHHHHHHHCCCCCHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC MGSANTKDMQRGHALEDEARDLYQFLTGAETRRVGFIRNGRAGCSPDSLIGEDGGLEIKT CCCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCCCCCCCCCCCCCEEEEE KAPHLLLDVIMKDEFPEEHKAQVQGALWLTNREWWDIAVYWRNLPLFIKRAYRDEPYIQR CCCHHHHHHHHHCCCCHHHHHHHCEEEEECCCCEEEEEEEECCCHHHHHHHHCCCHHHHH LATEVDRFNAELDAIVAEIRLRGEALAA HHHHHHHHHHHHHHHHHHHHHCCHHHCC >Mature Secondary Structure AIEIFDVEQNSPEWLRARMGIPTASEFEAIITPGKTKAEQKTRRTYMLKLAGELLTNEP EEEEEECCCCCHHHHHHHCCCCCHHCCCEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC MGSANTKDMQRGHALEDEARDLYQFLTGAETRRVGFIRNGRAGCSPDSLIGEDGGLEIKT CCCCCCHHHHHCCCCCHHHHHHHHHHCCCCHHEEEEEECCCCCCCCCCCCCCCCCEEEEE KAPHLLLDVIMKDEFPEEHKAQVQGALWLTNREWWDIAVYWRNLPLFIKRAYRDEPYIQR CCCHHHHHHHHHCCCCHHHHHHHCEEEEECCCCEEEEEEEECCCHHHHHHHHCCCHHHHH LATEVDRFNAELDAIVAEIRLRGEALAA HHHHHHHHHHHHHHHHHHHHHCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA