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The map label for this gene is yeaM [H]

Identifier: 192291360

GI number: 192291360

Start: 3252919

End: 3253740

Strand: Reverse

Name: yeaM [H]

Synonym: Rpal_2982

Alternate gene names: 192291360

Gene position: 3253740-3252919 (Counterclockwise)

Preceding gene: 192291364

Following gene: 192291358

Centisome position: 56.65

GC content: 62.77

Gene sequence:

>822_bases
ATGCTCATGGAATCTGTCGTTTCCGTTTTCGACCCCGACCTGACGCATCTGCCGGCCGTCGCCCACAGGCTGCATTTCTC
GGACCACGAGTCCGAGGTGCCGTTGCATGTGCATCGGAAGGGACAGCTGATCCTCGCCCTGCACGGAGCCGTCACCTGCA
CGGCCGGCAATGAGATCTGGATTGTGCCGCCCAACTGCGGGGTATGGATTCCTGGCGGCGTGCCTCACAGCGCGCGCGCG
ACTGCCAATGCCCAGCTCAACTACCTGTTTGTCGAGCCGGAGGCGGCGAACCTGCCCGGCTCCAGTTGCACGCTGGCGAT
TTCTCCGCTGATACGAGAAATGGTCGAGCGTCTAGCAGAGGAGCGTGCGGATTATCTCGCAGACAGCCATGCGGCCCGAA
TTGCGCGGGTGCTGCTGGACGAACTCGCTGACATGCCGCGAGAGCGGTTCAACCTGCCAATTTCCAGCCATCCCAAGATC
CGGGCCATCGCCGACGCCCTGACAGCCGAGCCGTCCGACCGCAGGACCTTGAGCGATTGGGCAAAGCAAGTCGCGATGAG
TGAAAGATCATTGGCGCGGCTGCTGATCCGCGAGACGGGCCTGACGTTCGGACGCTGGCGACAGCAACTCCACCTCGTGG
TTGCCCTCCGGGAACTCGCGAGCGGCGAAGCGGTGCAGAATGTTGCGGCCGGGCTTGGCTACGAGTCGGTCAACGCCTTC
ATCACCATGTTCAAGAAGGCGCTCGGAAGCACTCCCGCTCAGTACTTCGCGCAGCGTCACGCACCCACGAAAGCGGGATC
GGGTGAGCAGAATCGTGTTTGA

Upstream 100 bases:

>100_bases
CGTCCAGACGGCATGTTGTTCATGACGCCAGTTGTGACCAATTTGCAGAAGCGAATAAATTCGGTATTACGACAAGAAAT
CCCTGAAAACGGCCATTCGC

Downstream 100 bases:

>100_bases
GCAGGCGTTGGTTTTGTCCGACAGGAAGACCCAGCGCTCGGATCTTCCGCGTCTGTGCACTACCCGCCGGTCGCGTAGTC
GAACACCAGCTTGATATTCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MLMESVVSVFDPDLTHLPAVAHRLHFSDHESEVPLHVHRKGQLILALHGAVTCTAGNEIWIVPPNCGVWIPGGVPHSARA
TANAQLNYLFVEPEAANLPGSSCTLAISPLIREMVERLAEERADYLADSHAARIARVLLDELADMPRERFNLPISSHPKI
RAIADALTAEPSDRRTLSDWAKQVAMSERSLARLLIRETGLTFGRWRQQLHLVVALRELASGEAVQNVAAGLGYESVNAF
ITMFKKALGSTPAQYFAQRHAPTKAGSGEQNRV

Sequences:

>Translated_273_residues
MLMESVVSVFDPDLTHLPAVAHRLHFSDHESEVPLHVHRKGQLILALHGAVTCTAGNEIWIVPPNCGVWIPGGVPHSARA
TANAQLNYLFVEPEAANLPGSSCTLAISPLIREMVERLAEERADYLADSHAARIARVLLDELADMPRERFNLPISSHPKI
RAIADALTAEPSDRRTLSDWAKQVAMSERSLARLLIRETGLTFGRWRQQLHLVVALRELASGEAVQNVAAGLGYESVNAF
ITMFKKALGSTPAQYFAQRHAPTKAGSGEQNRV
>Mature_273_residues
MLMESVVSVFDPDLTHLPAVAHRLHFSDHESEVPLHVHRKGQLILALHGAVTCTAGNEIWIVPPNCGVWIPGGVPHSARA
TANAQLNYLFVEPEAANLPGSSCTLAISPLIREMVERLAEERADYLADSHAARIARVLLDELADMPRERFNLPISSHPKI
RAIADALTAEPSDRRTLSDWAKQVAMSERSLARLLIRETGLTFGRWRQQLHLVVALRELASGEAVQNVAAGLGYESVNAF
ITMFKKALGSTPAQYFAQRHAPTKAGSGEQNRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=249, Percent_Identity=51.8072289156626, Blast_Score=259, Evalue=2e-70,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 29925; Mature: 29925

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLMESVVSVFDPDLTHLPAVAHRLHFSDHESEVPLHVHRKGQLILALHGAVTCTAGNEIW
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEECEEEEECCCEEE
IVPPNCGVWIPGGVPHSARATANAQLNYLFVEPEAANLPGSSCTLAISPLIREMVERLAE
EECCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHH
ERADYLADSHAARIARVLLDELADMPRERFNLPISSHPKIRAIADALTAEPSDRRTLSDW
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
AKQVAMSERSLARLLIRETGLTFGRWRQQLHLVVALRELASGEAVQNVAAGLGYESVNAF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH
ITMFKKALGSTPAQYFAQRHAPTKAGSGEQNRV
HHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLMESVVSVFDPDLTHLPAVAHRLHFSDHESEVPLHVHRKGQLILALHGAVTCTAGNEIW
CCHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCEEEEEECEEEEECCCEEE
IVPPNCGVWIPGGVPHSARATANAQLNYLFVEPEAANLPGSSCTLAISPLIREMVERLAE
EECCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHH
ERADYLADSHAARIARVLLDELADMPRERFNLPISSHPKIRAIADALTAEPSDRRTLSDW
HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCHHHHHHHHHHCCCCCCHHHHHH
AKQVAMSERSLARLLIRETGLTFGRWRQQLHLVVALRELASGEAVQNVAAGLGYESVNAF
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHH
ITMFKKALGSTPAQYFAQRHAPTKAGSGEQNRV
HHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]