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The map label for this gene is yliB [C]

Identifier: 192291291

GI number: 192291291

Start: 3178800

End: 3180401

Strand: Reverse

Name: yliB [C]

Synonym: Rpal_2913

Alternate gene names: 192291291

Gene position: 3180401-3178800 (Counterclockwise)

Preceding gene: 192291293

Following gene: 192291290

Centisome position: 55.37

GC content: 60.05

Gene sequence:

>1602_bases
ATGAAGATGCAGCACCTCTCACGACGCGCCTTCCTCTCCTCGGTCGCTTTTGCCGCCCTCGCCGTCACCCAGCCCCACAT
CGTTCATGCGCAGGACACTCCTCTGCGGGGAGGTGTCTTGAACGTCCACATGAATGCCGAGCAGCGGGTTCTGAACCCTG
CGATCCGAGCATCGGTCGATGTCTACCTGGTCGGTAGCAAGATCGTCGAGCCGCTGGTGGATCTGGACGATAAAGGCCAA
CCGGTCGGCGTATTGGCGACAGCCTGGAAGACGTCAGCCGACGGCAAGACGATCACTTTCAACCTGCGTGAAAACGTCAA
ATGGCATGACGGCAAGCCGTTCACATCTGCAGATGTTCAGTACACCGCGATGGAGCTCTGGAAGAAGTACCTGAACTACG
GGTCGACCTTGCAGAAGAGCCTGCAAGCGGTCGATACGCCGGACCCGCTCACGGCCGTATTCCAGTATTCTGAACCGATG
CCGCTGGACCTGCTGCTGCGCGCTTTGCCCGACCTGGGATATATCGCGCCGAAGCATATCTATGAGGGCACCAACATTCT
CGAAAACCCGGCGAACATCGAGCCGATCGGGACCGGCCCGTTCAAATTCGTGAAGTACGAGCGCGGTCAGTACATCATCG
CCGAGCGCAACCCGGACTACTGGCGCAAGGGCTTCCCGTATCTCGACCGTATCGTGTGGAAGTTCATTCCCGACAAGACC
GCTGCGGCGATGGCGCTGGAAACCGGCTCGGTGGACCTCAGCGCCTACACGTCATTGACGTTGTCGGACATCAATCGGTT
GCGTGAGCACAAGGATTTCATCGTCTCAACCAAAGGTAACGAAGGCAACGCGGTGCAGAATACGGTGGAGTTCAATTTCC
GCCGCAAGGAGCTGGCGGATATTCGCGTCCGCCGCGCCATCATACACGCCATCAATACCGACTTCTTCATCGAGAACCTG
CTCTATGGCTTCGGCAAACGCGGCCAGGGCCCGATCCCCCAGTCGTCGGACTTCTTCGTCGCGGGCGCGCCGGATCTGAA
ATACGACGTCGCGCTCGCCAATAAGCTGCTGGACGAGGCTGGATATCCGCGCACCAACGGGCAACGCTTCAAGCTGCGAC
TGCTGCCCGCACCGTGGGGCGAGGACGTCAGTTCCTTCGCGACCTTCATCCAGCAGTCGCTGACGGAGGTCGGCATTCAG
GTCGAGATCGTGCCGCGTGATGCGGCCGGCTTTTTGTCCGACGTGTATCGCGATTGGAATTTCGACCTGGCAACCGGACG
CCACCAGTACAGGAGCGACCCCGCGGTCAGCACAACGGTCTGGTATCGCTCCGGCGCCACCAAGGGAGCGCCATGGACGA
ACCAATGGGGCTGGCAGGATGCCGAGATCGACCGGGTGATCGACAAGGCCGCAATCGAGCTCGATCCGCAGGCCCGCAAG
CGGCTCTACGCCGAATTCGTCAAGCTGACCAACACCGAGGTGCCGGTCTGGATGGCGACCGACCGCGAATTTATTACGGT
CACGAACAAGAAGCTGCGCAATGATCGCAACACCCCGCGCTGGCCTTCCAGCAGCTGGTATGACCTGTGGGTGCAGAAAT
GA

Upstream 100 bases:

>100_bases
CTCCGCGTCTGTTAAGCCCGCCCGCCCCGGCTAGCGCACCGTCTACGTCGAGACTCTGCCGGCCGCACGAACACCGCATC
CGCTGAACGGAGCCGAAACC

Downstream 100 bases:

>100_bases
GCAACGTCCCGTTGAAACTCAACTCCACACCCTATCCGTTTCCGCTGCACGGCCCGCTGACCACGCACAACACAGCCCTG
CTGGTCATCGATGTCCAGGG

Product: family 5 extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 533; Mature: 533

Protein sequence:

>533_residues
MKMQHLSRRAFLSSVAFAALAVTQPHIVHAQDTPLRGGVLNVHMNAEQRVLNPAIRASVDVYLVGSKIVEPLVDLDDKGQ
PVGVLATAWKTSADGKTITFNLRENVKWHDGKPFTSADVQYTAMELWKKYLNYGSTLQKSLQAVDTPDPLTAVFQYSEPM
PLDLLLRALPDLGYIAPKHIYEGTNILENPANIEPIGTGPFKFVKYERGQYIIAERNPDYWRKGFPYLDRIVWKFIPDKT
AAAMALETGSVDLSAYTSLTLSDINRLREHKDFIVSTKGNEGNAVQNTVEFNFRRKELADIRVRRAIIHAINTDFFIENL
LYGFGKRGQGPIPQSSDFFVAGAPDLKYDVALANKLLDEAGYPRTNGQRFKLRLLPAPWGEDVSSFATFIQQSLTEVGIQ
VEIVPRDAAGFLSDVYRDWNFDLATGRHQYRSDPAVSTTVWYRSGATKGAPWTNQWGWQDAEIDRVIDKAAIELDPQARK
RLYAEFVKLTNTEVPVWMATDREFITVTNKKLRNDRNTPRWPSSSWYDLWVQK

Sequences:

>Translated_533_residues
MKMQHLSRRAFLSSVAFAALAVTQPHIVHAQDTPLRGGVLNVHMNAEQRVLNPAIRASVDVYLVGSKIVEPLVDLDDKGQ
PVGVLATAWKTSADGKTITFNLRENVKWHDGKPFTSADVQYTAMELWKKYLNYGSTLQKSLQAVDTPDPLTAVFQYSEPM
PLDLLLRALPDLGYIAPKHIYEGTNILENPANIEPIGTGPFKFVKYERGQYIIAERNPDYWRKGFPYLDRIVWKFIPDKT
AAAMALETGSVDLSAYTSLTLSDINRLREHKDFIVSTKGNEGNAVQNTVEFNFRRKELADIRVRRAIIHAINTDFFIENL
LYGFGKRGQGPIPQSSDFFVAGAPDLKYDVALANKLLDEAGYPRTNGQRFKLRLLPAPWGEDVSSFATFIQQSLTEVGIQ
VEIVPRDAAGFLSDVYRDWNFDLATGRHQYRSDPAVSTTVWYRSGATKGAPWTNQWGWQDAEIDRVIDKAAIELDPQARK
RLYAEFVKLTNTEVPVWMATDREFITVTNKKLRNDRNTPRWPSSSWYDLWVQK
>Mature_533_residues
MKMQHLSRRAFLSSVAFAALAVTQPHIVHAQDTPLRGGVLNVHMNAEQRVLNPAIRASVDVYLVGSKIVEPLVDLDDKGQ
PVGVLATAWKTSADGKTITFNLRENVKWHDGKPFTSADVQYTAMELWKKYLNYGSTLQKSLQAVDTPDPLTAVFQYSEPM
PLDLLLRALPDLGYIAPKHIYEGTNILENPANIEPIGTGPFKFVKYERGQYIIAERNPDYWRKGFPYLDRIVWKFIPDKT
AAAMALETGSVDLSAYTSLTLSDINRLREHKDFIVSTKGNEGNAVQNTVEFNFRRKELADIRVRRAIIHAINTDFFIENL
LYGFGKRGQGPIPQSSDFFVAGAPDLKYDVALANKLLDEAGYPRTNGQRFKLRLLPAPWGEDVSSFATFIQQSLTEVGIQ
VEIVPRDAAGFLSDVYRDWNFDLATGRHQYRSDPAVSTTVWYRSGATKGAPWTNQWGWQDAEIDRVIDKAAIELDPQARK
RLYAEFVKLTNTEVPVWMATDREFITVTNKKLRNDRNTPRWPSSSWYDLWVQK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 5 family [H]

Homologues:

Organism=Escherichia coli, GI1787052, Length=446, Percent_Identity=25.7847533632287, Blast_Score=117, Evalue=2e-27,
Organism=Escherichia coli, GI1789966, Length=436, Percent_Identity=25.9174311926606, Blast_Score=108, Evalue=7e-25,
Organism=Escherichia coli, GI1787762, Length=488, Percent_Identity=24.3852459016393, Blast_Score=103, Evalue=3e-23,
Organism=Escherichia coli, GI1789887, Length=449, Percent_Identity=25.1670378619154, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI87082063, Length=384, Percent_Identity=23.9583333333333, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081878, Length=382, Percent_Identity=26.7015706806283, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1787495, Length=458, Percent_Identity=22.2707423580786, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI1787551, Length=521, Percent_Identity=23.8003838771593, Blast_Score=66, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000914 [H]

Pfam domain/function: PF00496 SBP_bac_5 [H]

EC number: NA

Molecular weight: Translated: 60406; Mature: 60406

Theoretical pI: Translated: 8.85; Mature: 8.85

Prosite motif: PS01040 SBP_BACTERIAL_5

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMQHLSRRAFLSSVAFAALAVTQPHIVHAQDTPLRGGVLNVHMNAEQRVLNPAIRASVD
CCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCHHHHHCHHHHCEEE
VYLVGSKIVEPLVDLDDKGQPVGVLATAWKTSADGKTITFNLRENVKWHDGKPFTSADVQ
EEEECHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCEECCCCCCCCCCCH
YTAMELWKKYLNYGSTLQKSLQAVDTPDPLTAVFQYSEPMPLDLLLRALPDLGYIAPKHI
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHEECCCCCCHHHHHHHCCCCCCCCHHHH
YEGTNILENPANIEPIGTGPFKFVKYERGQYIIAERNPDYWRKGFPYLDRIVWKFIPDKT
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCHHHCCCCHHHHHHHHHCCCCH
AAAMALETGSVDLSAYTSLTLSDINRLREHKDFIVSTKGNEGNAVQNTVEFNFRRKELAD
HHEEEEECCCEEEHHHHEEHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCHHHHHH
IRVRRAIIHAINTDFFIENLLYGFGKRGQGPIPQSSDFFVAGAPDLKYDVALANKLLDEA
HHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
GYPRTNGQRFKLRLLPAPWGEDVSSFATFIQQSLTEVGIQVEIVPRDAAGFLSDVYRDWN
CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCC
FDLATGRHQYRSDPAVSTTVWYRSGATKGAPWTNQWGWQDAEIDRVIDKAAIELDPQARK
CCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
RLYAEFVKLTNTEVPVWMATDREFITVTNKKLRNDRNTPRWPSSSWYDLWVQK
HHHHHHHHHCCCCCEEEEECCCEEEEEECHHHHCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MKMQHLSRRAFLSSVAFAALAVTQPHIVHAQDTPLRGGVLNVHMNAEQRVLNPAIRASVD
CCHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCEEEEEECCHHHHHCHHHHCEEE
VYLVGSKIVEPLVDLDDKGQPVGVLATAWKTSADGKTITFNLRENVKWHDGKPFTSADVQ
EEEECHHHHHHHHCCCCCCCCEEEEEEEEECCCCCCEEEEEECCCCEECCCCCCCCCCCH
YTAMELWKKYLNYGSTLQKSLQAVDTPDPLTAVFQYSEPMPLDLLLRALPDLGYIAPKHI
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCHHHHEECCCCCCHHHHHHHCCCCCCCCHHHH
YEGTNILENPANIEPIGTGPFKFVKYERGQYIIAERNPDYWRKGFPYLDRIVWKFIPDKT
CCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCHHHCCCCHHHHHHHHHCCCCH
AAAMALETGSVDLSAYTSLTLSDINRLREHKDFIVSTKGNEGNAVQNTVEFNFRRKELAD
HHEEEEECCCEEEHHHHEEHHHHHHHHHHCCCEEEEECCCCCCCEEEEEEECCCHHHHHH
IRVRRAIIHAINTDFFIENLLYGFGKRGQGPIPQSSDFFVAGAPDLKYDVALANKLLDEA
HHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHC
GYPRTNGQRFKLRLLPAPWGEDVSSFATFIQQSLTEVGIQVEIVPRDAAGFLSDVYRDWN
CCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCC
FDLATGRHQYRSDPAVSTTVWYRSGATKGAPWTNQWGWQDAEIDRVIDKAAIELDPQARK
CCCCCCCHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHH
RLYAEFVKLTNTEVPVWMATDREFITVTNKKLRNDRNTPRWPSSSWYDLWVQK
HHHHHHHHHCCCCCEEEEECCCEEEEEECHHHHCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA