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The map label for this gene is xylS1 [H]

Identifier: 192291135

GI number: 192291135

Start: 2998176

End: 2999198

Strand: Reverse

Name: xylS1 [H]

Synonym: Rpal_2756

Alternate gene names: 192291135

Gene position: 2999198-2998176 (Counterclockwise)

Preceding gene: 192291138

Following gene: 192291134

Centisome position: 52.21

GC content: 62.66

Gene sequence:

>1023_bases
ATGAATTCGGAAGACATCGTTTCAGATTTGGATCGGGAGTTACTGCAGGATTTTCCGCTGGTGCGGAGCCAAGATCCGAT
CGAAGCGAGAGACATCCTGCGGCGCTATGGCGTCGACATGATCGTCTCGAATCCCAGCGACTTCTTCATGCGGACCAACC
TCGCCGAGCTGCCGCATATCGGCTTGTATTTCGTCCATAGCTCCGGTGCGACCCGGCTGGTGATCCCCGAGCGCGAGACC
GCCCTGGTGCATCTTTCCCTCCAGGGTGACGCGTTACTCTCCAGCGGCACGCGCCGCGTCGAACTGTCGCAAGGTTCAGC
TTGTATTTGTTCGCCAGGGGTGAGTGCCCAGCTCGAATTCGGACAGAACTCGCGGCAATTGCTGCTGCGGATGCCGCAGC
GGGTGCTGGAGCGCGCGATCGCTGCGCTGGTCGGCTTCAAGCCGCGGCAGCCGATCCTGTTCGAGCCCGCGATCTGCAAC
GACGAGCCGCGCTATCTCGGTTTCAGAGAGCTGACGACGCTGCTCGCCTCGCGGCTGGACTCCAGCTACTCGGTCTGGCC
GAAGAACGTGCTGCTCCATCTGGAGCAATCCTGCATTACCGCGCTGCTATATTGCAGCCGGCACAATCTCGGCCACCTGC
TGGAGAACGCCAACGCGGTGAACGACGACGTGCCGCGCTACGTGCGGACGGCGGAGCACTACGTCGAGAGCCACCGCGAC
GAAGACATCAGCATCGAGGACGTCGCACGGATTGCCGGCGTCAGCATCTCGACCCTCACCCGCGCCTTCCTCAAGCATCG
CGGCTGCTCGCCATCGGCTTACGTCAAGCGCGTCAAGCTCAACCACGCCAAGCGGCTGCTGGAGACTGGCGCCGCCACCA
CGCTGATCGGTGTCGCGCTCCGTTGCGGGTTCGCCAACCCGAGCCGCTTCTCCCAGGATTATCGAGAGGCTTTCGGCGAA
TCTCCGACCGAAACGCTGCGCCGCTGCCGCCCCAATCGAGGCCCCGAGACGCAAAAACATTAA

Upstream 100 bases:

>100_bases
CAAATTCGGTCAGTTAGGACAAAACCGGGAGATGGGTCGACAAAGCTGTCACAACGGTCGAAATAACGAGACCATCCACT
GGAGTCAGCGTGAGCGTCAG

Downstream 100 bases:

>100_bases
GCTATTTCAGCCGTTTCATGCGCCGGCGCATTGACTTTGGCCGATTCAGGCCTATGTTCCGCCCGTAATGCGGCTCGGTA
TTGCGTCAAGTGATACCCAG

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 340; Mature: 340

Protein sequence:

>340_residues
MNSEDIVSDLDRELLQDFPLVRSQDPIEARDILRRYGVDMIVSNPSDFFMRTNLAELPHIGLYFVHSSGATRLVIPERET
ALVHLSLQGDALLSSGTRRVELSQGSACICSPGVSAQLEFGQNSRQLLLRMPQRVLERAIAALVGFKPRQPILFEPAICN
DEPRYLGFRELTTLLASRLDSSYSVWPKNVLLHLEQSCITALLYCSRHNLGHLLENANAVNDDVPRYVRTAEHYVESHRD
EDISIEDVARIAGVSISTLTRAFLKHRGCSPSAYVKRVKLNHAKRLLETGAATTLIGVALRCGFANPSRFSQDYREAFGE
SPTETLRRCRPNRGPETQKH

Sequences:

>Translated_340_residues
MNSEDIVSDLDRELLQDFPLVRSQDPIEARDILRRYGVDMIVSNPSDFFMRTNLAELPHIGLYFVHSSGATRLVIPERET
ALVHLSLQGDALLSSGTRRVELSQGSACICSPGVSAQLEFGQNSRQLLLRMPQRVLERAIAALVGFKPRQPILFEPAICN
DEPRYLGFRELTTLLASRLDSSYSVWPKNVLLHLEQSCITALLYCSRHNLGHLLENANAVNDDVPRYVRTAEHYVESHRD
EDISIEDVARIAGVSISTLTRAFLKHRGCSPSAYVKRVKLNHAKRLLETGAATTLIGVALRCGFANPSRFSQDYREAFGE
SPTETLRRCRPNRGPETQKH
>Mature_340_residues
MNSEDIVSDLDRELLQDFPLVRSQDPIEARDILRRYGVDMIVSNPSDFFMRTNLAELPHIGLYFVHSSGATRLVIPERET
ALVHLSLQGDALLSSGTRRVELSQGSACICSPGVSAQLEFGQNSRQLLLRMPQRVLERAIAALVGFKPRQPILFEPAICN
DEPRYLGFRELTTLLASRLDSSYSVWPKNVLLHLEQSCITALLYCSRHNLGHLLENANAVNDDVPRYVRTAEHYVESHRD
EDISIEDVARIAGVSISTLTRAFLKHRGCSPSAYVKRVKLNHAKRLLETGAATTLIGVALRCGFANPSRFSQDYREAFGE
SPTETLRRCRPNRGPETQKH

Specific function: Regulatory protein of the TOL plasmid xyl operons. XylS activates the xylXYZLTEGFJQKIH operon required for the degradation of toluene, m-xylene and p-xylene [H]

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060 [H]

Pfam domain/function: PF02311 AraC_binding; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 38163; Mature: 38163

Theoretical pI: Translated: 7.80; Mature: 7.80

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSEDIVSDLDRELLQDFPLVRSQDPIEARDILRRYGVDMIVSNPSDFFMRTNLAELPHI
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHCCHHHCCCC
GLYFVHSSGATRLVIPERETALVHLSLQGDALLSSGTRRVELSQGSACICSPGVSAQLEF
EEEEEECCCCEEEEECCCCEEEEEEEECCCHHHHCCCCEEEECCCCEEEECCCCCEEEEC
GQNSRQLLLRMPQRVLERAIAALVGFKPRQPILFEPAICNDEPRYLGFRELTTLLASRLD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCC
SSYSVWPKNVLLHLEQSCITALLYCSRHNLGHLLENANAVNDDVPRYVRTAEHYVESHRD
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
EDISIEDVARIAGVSISTLTRAFLKHRGCSPSAYVKRVKLNHAKRLLETGAATTLIGVAL
CCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
RCGFANPSRFSQDYREAFGESPTETLRRCRPNRGPETQKH
HCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MNSEDIVSDLDRELLQDFPLVRSQDPIEARDILRRYGVDMIVSNPSDFFMRTNLAELPHI
CCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCEEEECCHHHHHHCCHHHCCCC
GLYFVHSSGATRLVIPERETALVHLSLQGDALLSSGTRRVELSQGSACICSPGVSAQLEF
EEEEEECCCCEEEEECCCCEEEEEEEECCCHHHHCCCCEEEECCCCEEEECCCCCEEEEC
GQNSRQLLLRMPQRVLERAIAALVGFKPRQPILFEPAICNDEPRYLGFRELTTLLASRLD
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCC
SSYSVWPKNVLLHLEQSCITALLYCSRHNLGHLLENANAVNDDVPRYVRTAEHYVESHRD
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC
EDISIEDVARIAGVSISTLTRAFLKHRGCSPSAYVKRVKLNHAKRLLETGAATTLIGVAL
CCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
RCGFANPSRFSQDYREAFGESPTETLRRCRPNRGPETQKH
HCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8473862 [H]