| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is 192291059
Identifier: 192291059
GI number: 192291059
Start: 2907414
End: 2908079
Strand: Reverse
Name: 192291059
Synonym: Rpal_2679
Alternate gene names: NA
Gene position: 2908079-2907414 (Counterclockwise)
Preceding gene: 192291060
Following gene: 192291058
Centisome position: 50.63
GC content: 61.56
Gene sequence:
>666_bases ATGGCCAAGCCGAAGCCCGACGTCGTCACCTGCTCCGAATGCGGGCAATTCAATTGCTATCGTCACGACAAGCGTTATCC CGGCATCTGCGCGACGACAGATCTGGCGCCCGAAGAGCGGCAGGAACTGGTCGAGCTGTATTCGAGCGATGCGATCGACG CGACGCTGGCGCGCGCGGCGGCCGAGGTCGAGGGGCTGTATTATTGCAAGCTCAACCGTGTCGAAGAGACCGTTGCATTC GCACGCCGGATCGGCGCCAAGCGGATCGGCATCGCCACCTGCATCGGCCTGATCGAAGAGACCAAGGTACTGGTCGACAT CCTGCGCCTCGCAGGCTTCGAGACCCGCACCGCACTGTGCAAGGTCGGCTCGATCGACAAGACCGAGATTGGCGTGCCCG AAGAGATGAAGATCAAATGCGGCCACGAGGCGTGCTGCAATCCAGTGTTGCAGGCACGGCTTCTCAATCGCGAAGGGACG CACCTCAATGTCATCATGGGCCTGTGCGTCGGCCACGACTCGCTGTTCATCCGCCACGCGGAAGCGCCGGTGACGACACT GGTGGTGAAGGACCGAGTACTGAGCCACAATCCGGTTGCGGCGTTCCACACCGTCAAGACCTACACCAGCCGGATGCTCG ACAAGAAGCGGATGCAGGAGTTGTGA
Upstream 100 bases:
>100_bases AATAACCAAATACGCAAGCCGGCTGACGCCTTACGCGATTGCGCGACCGGCGCCGGCCGGCTACGCGGAACTTAGAACCA TCACATCTGGAAATACACTC
Downstream 100 bases:
>100_bases GACGGTTCGCCGGTCGGCTTCCGCCCGGCCCGCAGTTTGTCAGCCCCCTCAATGCGTGAGGAGCGAGGCAGGATCACCCT GCTCTCGCTCCTCGGCCTAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MAKPKPDVVTCSECGQFNCYRHDKRYPGICATTDLAPEERQELVELYSSDAIDATLARAAAEVEGLYYCKLNRVEETVAF ARRIGAKRIGIATCIGLIEETKVLVDILRLAGFETRTALCKVGSIDKTEIGVPEEMKIKCGHEACCNPVLQARLLNREGT HLNVIMGLCVGHDSLFIRHAEAPVTTLVVKDRVLSHNPVAAFHTVKTYTSRMLDKKRMQEL
Sequences:
>Translated_221_residues MAKPKPDVVTCSECGQFNCYRHDKRYPGICATTDLAPEERQELVELYSSDAIDATLARAAAEVEGLYYCKLNRVEETVAF ARRIGAKRIGIATCIGLIEETKVLVDILRLAGFETRTALCKVGSIDKTEIGVPEEMKIKCGHEACCNPVLQARLLNREGT HLNVIMGLCVGHDSLFIRHAEAPVTTLVVKDRVLSHNPVAAFHTVKTYTSRMLDKKRMQEL >Mature_220_residues AKPKPDVVTCSECGQFNCYRHDKRYPGICATTDLAPEERQELVELYSSDAIDATLARAAAEVEGLYYCKLNRVEETVAFA RRIGAKRIGIATCIGLIEETKVLVDILRLAGFETRTALCKVGSIDKTEIGVPEEMKIKCGHEACCNPVLQARLLNREGTH LNVIMGLCVGHDSLFIRHAEAPVTTLVVKDRVLSHNPVAAFHTVKTYTSRMLDKKRMQEL
Specific function: Unknown
COG id: COG4887
COG function: function code R; Uncharacterized metal-binding protein conserved in archaea
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014997 [H]
Pfam domain/function: PF08901 DUF1847 [H]
EC number: NA
Molecular weight: Translated: 24548; Mature: 24417
Theoretical pI: Translated: 7.64; Mature: 7.64
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 7.2 %Cys+Met (Translated Protein) 5.0 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 6.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKPKPDVVTCSECGQFNCYRHDKRYPGICATTDLAPEERQELVELYSSDAIDATLARAA CCCCCCCEEECCCCCCCCCEECCCCCCCCEEECCCCHHHHHHHHHHHCCCCHHHHHHHHH AEVEGLYYCKLNRVEETVAFARRIGAKRIGIATCIGLIEETKVLVDILRLAGFETRTALC HHHCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH KVGSIDKTEIGVPEEMKIKCGHEACCNPVLQARLLNREGTHLNVIMGLCVGHDSLFIRHA HCCCCCCCCCCCCCCCEEECCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEC EAPVTTLVVKDRVLSHNPVAAFHTVKTYTSRMLDKKRMQEL CCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AKPKPDVVTCSECGQFNCYRHDKRYPGICATTDLAPEERQELVELYSSDAIDATLARAA CCCCCCEEECCCCCCCCCEECCCCCCCCEEECCCCHHHHHHHHHHHCCCCHHHHHHHHH AEVEGLYYCKLNRVEETVAFARRIGAKRIGIATCIGLIEETKVLVDILRLAGFETRTALC HHHCCEEEEEHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH KVGSIDKTEIGVPEEMKIKCGHEACCNPVLQARLLNREGTHLNVIMGLCVGHDSLFIRHA HCCCCCCCCCCCCCCCEEECCCHHHCCHHHHHHHHCCCCCCHHHHHHHHHCCCCEEEEEC EAPVTTLVVKDRVLSHNPVAAFHTVKTYTSRMLDKKRMQEL CCCEEEEEEHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]