| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is rhbC [H]
Identifier: 192291013
GI number: 192291013
Start: 2850353
End: 2852134
Strand: Reverse
Name: rhbC [H]
Synonym: Rpal_2632
Alternate gene names: 192291013
Gene position: 2852134-2850353 (Counterclockwise)
Preceding gene: 192291015
Following gene: 192291012
Centisome position: 49.65
GC content: 63.24
Gene sequence:
>1782_bases ATGCACGAATCCATGCGCGAAATCGCTGAACGCGCAACATTCCAGAGCTTTGCAAATTGCTATCGGCGCGAGATCGACCC CGGAATGCCCTCGCAGCATCGGCCGGAGTGCGGGGATCGGCGGACCTACGTCGAGTGGTCTTGCCCAATGGCAGCTGCGA CATTACGCGCCGAGGTCGAGCGGGAGTCGCTGTGCGGCCCGCTCCGCTTCGGGCGAGTCTTCATTTGCCGAGCACCGGAC AATGCCTGGCACGAAATCGCACCTCTGCGCGCGCTCTATCTGATGGTGCAAGAATGCTATTCAGGAATCGGCGCCGCACG AGCGGAAGCGCTGCGCAATGAGGAGGCAGAGCTGCTTGGCCGCGTACTTGCGAGCTATCAGTGCATTGCGGATAGCCTGC AGCGCTCATCCGGGGAGGCCGGCAGAACCTTCCTCGACGGCGAACAGAGCCTGATGTTTGGGCATTGGCTGCACCCGACG CCGAAGAGCCGGCAAGGCATGGCCGACTGGCAGCAGCCCACTTATGCGCCGGAGCACCGTGGCCGGTTCCAACTGACATA CTTTGCCGTCGACGCGGAATTGTTACGTCGCGGCAGCACAGGTGACGTTTCCGTCTCTGGCATTCTCAAGACGCTCCTCC CTGAGGCCGACCGCCCGACGTTGCGTCCGGGCGAAGCGCTGATTCCACTCCACCCGCTGCAGGCCGAAGCGGTGATGCTC TCGCCCGATATCGCGGAGCTCGCCCGGGAAGGCCGGCTTCGCCGCCTCGGCCCATTGGGCGCCGAGTTCTCGCCGACCTC CTCGGTGCGCACGGTTTACAGCCCCGCGATTCCGTGGATGCTGAAATTCTCTCTGCCGGTGCGGATCACCAACTCCTTGC GGATCAATCGGATGCCCGAGCTTAAAGCCGGGGTCGCGATGTCGCGGCTGTTCGCACGAACCGATTTCCTCGCGCGCCAT CCTTGCTTCAGATTGATCGGCGATCCTGCCTACCTGACGCTCGCCCTCCCCGGCCGCACCGAAAGCGGATTCGAAATCAT CTTCCGGGAAAATCCATTCACAACGGGCAACGAGACCAAGGGCATCACGATCGCAGCCCTGACGGCCGACCCTCCGCCTC ACGCCCGCTCGCGGCTCGACGTGTTGGTGCGAGAATATGCGGCGCAGCAGGGCTTGCCGGTGGCGAACGCTTGCCGGCAT TGGTTCTCGGCCTATCTCGATTGCGCGCTGGACCCGCTCGTCAGGCTCTACAACGAGCTCGGCGTCGCGCTAGAGGCGCA TCAGCAGAACGTGTTGCTCGACGTCTCGTCCGGCCTGCCGACCGCGTCCTATTATCGGGACAATCAGGGCTTCTACCTAT CGAATGCCCATCGCGATCGGCTGGTCTCCCTCGTACCCGAAACCGCAGAGATCGGTGGTCTGTATTTCGACGATCGGGTG ATCCAGGAGCGGTTCGCCTATTACCTGATCGTCAATCAGATCTGCTCGATGATCGCCCGCATGGGGCAGGATCGGCTGAG CGACGAAGAAGCGCTGCTGATTATGTTACGCGAGCGGCTCAACGACTTGGCGCACGAACTCGGCGGGGTCGGACGCGACT TCGCCTCTGGAATCGTCGACCGCCCGACCGTTGCCGCCAAGGCCAACCTCCTGACACGGATGCTCGACATCGACGAGCTG GAGGCCGAGGACGGCCGCGCGATCTATGTGCAGCTGCCAAATCCACTGTTTGGCGATCGCCGCGCGGCGCGACGGGGAGA AGCTCGTGTCGCTTCCCGGTGA
Upstream 100 bases:
>100_bases TCTAAACTATGCACCCCGGCTACGATTACGGGTCTGGCCGCCGTCGACCGTTGATACCATACGGCCATGCAATTCGGGCC GCTTCGCGGAAGACATACCG
Downstream 100 bases:
>100_bases CATCCCCGCCCGGCCGGAGGAGCGGGTCGTGCGCCAACTCACCGCAGCGGCGTTGTACGAAAACCTGTTCGGTCCTTTGG CGTTGGCGTACGCCCCAGGG
Product: IucA/IucC family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 593; Mature: 593
Protein sequence:
>593_residues MHESMREIAERATFQSFANCYRREIDPGMPSQHRPECGDRRTYVEWSCPMAAATLRAEVERESLCGPLRFGRVFICRAPD NAWHEIAPLRALYLMVQECYSGIGAARAEALRNEEAELLGRVLASYQCIADSLQRSSGEAGRTFLDGEQSLMFGHWLHPT PKSRQGMADWQQPTYAPEHRGRFQLTYFAVDAELLRRGSTGDVSVSGILKTLLPEADRPTLRPGEALIPLHPLQAEAVML SPDIAELAREGRLRRLGPLGAEFSPTSSVRTVYSPAIPWMLKFSLPVRITNSLRINRMPELKAGVAMSRLFARTDFLARH PCFRLIGDPAYLTLALPGRTESGFEIIFRENPFTTGNETKGITIAALTADPPPHARSRLDVLVREYAAQQGLPVANACRH WFSAYLDCALDPLVRLYNELGVALEAHQQNVLLDVSSGLPTASYYRDNQGFYLSNAHRDRLVSLVPETAEIGGLYFDDRV IQERFAYYLIVNQICSMIARMGQDRLSDEEALLIMLRERLNDLAHELGGVGRDFASGIVDRPTVAAKANLLTRMLDIDEL EAEDGRAIYVQLPNPLFGDRRAARRGEARVASR
Sequences:
>Translated_593_residues MHESMREIAERATFQSFANCYRREIDPGMPSQHRPECGDRRTYVEWSCPMAAATLRAEVERESLCGPLRFGRVFICRAPD NAWHEIAPLRALYLMVQECYSGIGAARAEALRNEEAELLGRVLASYQCIADSLQRSSGEAGRTFLDGEQSLMFGHWLHPT PKSRQGMADWQQPTYAPEHRGRFQLTYFAVDAELLRRGSTGDVSVSGILKTLLPEADRPTLRPGEALIPLHPLQAEAVML SPDIAELAREGRLRRLGPLGAEFSPTSSVRTVYSPAIPWMLKFSLPVRITNSLRINRMPELKAGVAMSRLFARTDFLARH PCFRLIGDPAYLTLALPGRTESGFEIIFRENPFTTGNETKGITIAALTADPPPHARSRLDVLVREYAAQQGLPVANACRH WFSAYLDCALDPLVRLYNELGVALEAHQQNVLLDVSSGLPTASYYRDNQGFYLSNAHRDRLVSLVPETAEIGGLYFDDRV IQERFAYYLIVNQICSMIARMGQDRLSDEEALLIMLRERLNDLAHELGGVGRDFASGIVDRPTVAAKANLLTRMLDIDEL EAEDGRAIYVQLPNPLFGDRRAARRGEARVASR >Mature_593_residues MHESMREIAERATFQSFANCYRREIDPGMPSQHRPECGDRRTYVEWSCPMAAATLRAEVERESLCGPLRFGRVFICRAPD NAWHEIAPLRALYLMVQECYSGIGAARAEALRNEEAELLGRVLASYQCIADSLQRSSGEAGRTFLDGEQSLMFGHWLHPT PKSRQGMADWQQPTYAPEHRGRFQLTYFAVDAELLRRGSTGDVSVSGILKTLLPEADRPTLRPGEALIPLHPLQAEAVML SPDIAELAREGRLRRLGPLGAEFSPTSSVRTVYSPAIPWMLKFSLPVRITNSLRINRMPELKAGVAMSRLFARTDFLARH PCFRLIGDPAYLTLALPGRTESGFEIIFRENPFTTGNETKGITIAALTADPPPHARSRLDVLVREYAAQQGLPVANACRH WFSAYLDCALDPLVRLYNELGVALEAHQQNVLLDVSSGLPTASYYRDNQGFYLSNAHRDRLVSLVPETAEIGGLYFDDRV IQERFAYYLIVNQICSMIARMGQDRLSDEEALLIMLRERLNDLAHELGGVGRDFASGIVDRPTVAAKANLLTRMLDIDEL EAEDGRAIYVQLPNPLFGDRRAARRGEARVASR
Specific function: Unknown
COG id: COG4264
COG function: function code Q; Siderophore synthetase component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the iucA family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007310 - InterPro: IPR022770 [H]
Pfam domain/function: PF06276 FhuF; PF04183 IucA_IucC [H]
EC number: NA
Molecular weight: Translated: 66371; Mature: 66371
Theoretical pI: Translated: 6.70; Mature: 6.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MHESMREIAERATFQSFANCYRREIDPGMPSQHRPECGDRRTYVEWSCPMAAATLRAEVE CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH RESLCGPLRFGRVFICRAPDNAWHEIAPLRALYLMVQECYSGIGAARAEALRNEEAELLG HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH RVLASYQCIADSLQRSSGEAGRTFLDGEQSLMFGHWLHPTPKSRQGMADWQQPTYAPEHR HHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC GRFQLTYFAVDAELLRRGSTGDVSVSGILKTLLPEADRPTLRPGEALIPLHPLQAEAVML CCEEEEEEEECHHHHHCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE SPDIAELAREGRLRRLGPLGAEFSPTSSVRTVYSPAIPWMLKFSLPVRITNSLRINRMPE CCCHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCEEEECCEEECCCCC LKAGVAMSRLFARTDFLARHPCFRLIGDPAYLTLALPGRTESGFEIIFRENPFTTGNETK HHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCC GITIAALTADPPPHARSRLDVLVREYAAQQGLPVANACRHWFSAYLDCALDPLVRLYNEL CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GVALEAHQQNVLLDVSSGLPTASYYRDNQGFYLSNAHRDRLVSLVPETAEIGGLYFDDRV CCEEEECCCCEEEEECCCCCCHHHEECCCCEEECCCCHHHHHHHCCCHHHHCCEEEHHHH IQERFAYYLIVNQICSMIARMGQDRLSDEEALLIMLRERLNDLAHELGGVGRDFASGIVD HHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC RPTVAAKANLLTRMLDIDELEAEDGRAIYVQLPNPLFGDRRAARRGEARVASR CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCC >Mature Secondary Structure MHESMREIAERATFQSFANCYRREIDPGMPSQHRPECGDRRTYVEWSCPMAAATLRAEVE CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHH RESLCGPLRFGRVFICRAPDNAWHEIAPLRALYLMVQECYSGIGAARAEALRNEEAELLG HHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH RVLASYQCIADSLQRSSGEAGRTFLDGEQSLMFGHWLHPTPKSRQGMADWQQPTYAPEHR HHHHHHHHHHHHHHHCCCCCCCEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCC GRFQLTYFAVDAELLRRGSTGDVSVSGILKTLLPEADRPTLRPGEALIPLHPLQAEAVML CCEEEEEEEECHHHHHCCCCCCEEHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEE SPDIAELAREGRLRRLGPLGAEFSPTSSVRTVYSPAIPWMLKFSLPVRITNSLRINRMPE CCCHHHHHHCCCCHHCCCCCCCCCCCCCHHHHHCCCCCEEEEEECCEEEECCEEECCCCC LKAGVAMSRLFARTDFLARHPCFRLIGDPAYLTLALPGRTESGFEIIFRENPFTTGNETK HHHHHHHHHHHHHHHHHHHCCHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCCCCCCC GITIAALTADPPPHARSRLDVLVREYAAQQGLPVANACRHWFSAYLDCALDPLVRLYNEL CEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH GVALEAHQQNVLLDVSSGLPTASYYRDNQGFYLSNAHRDRLVSLVPETAEIGGLYFDDRV CCEEEECCCCEEEEECCCCCCHHHEECCCCEEECCCCHHHHHHHCCCHHHHCCEEEHHHH IQERFAYYLIVNQICSMIARMGQDRLSDEEALLIMLRERLNDLAHELGGVGRDFASGIVD HHHHHHHHHHHHHHHHHHHHHCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCC RPTVAAKANLLTRMLDIDELEAEDGRAIYVQLPNPLFGDRRAARRGEARVASR CCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11274118; 11481432 [H]