The gene/protein map for NC_010170 is currently unavailable.
Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

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The map label for this gene is yohF [H]

Identifier: 192290850

GI number: 192290850

Start: 2662357

End: 2663115

Strand: Reverse

Name: yohF [H]

Synonym: Rpal_2466

Alternate gene names: 192290850

Gene position: 2663115-2662357 (Counterclockwise)

Preceding gene: 192290851

Following gene: 192290848

Centisome position: 46.36

GC content: 69.57

Gene sequence:

>759_bases
ATGGCGAACGCCACCACCAAGATCGCCCTCGTCACCGGCGCAGGGACCGGTGTCGGCCGTGCCGCGGCGCTGGCGCTGAT
GGAGTCCGGCTTCACCGTGGTGCTGGCCGGGCGCCGGCTGGAACTGCTGCAGGAGACCCAGAAGCTCGGCGCCGAGTTCG
GCGACAGCCTGCCGGTGGTCGCCGACATGGCCGATCCGGCGTCGATCGCCGCGCTGTTCGACACCATCGTGCAGCGCTAC
GGCCGGCTCGACGTGCTGTTCAACAACGCCGGCATCGGCGCGCCGCCGGTGCCGTTCGAGGATCTGCCGCTGGAGCAGTG
GCAGGCGGTGGTGACGACCAACCTCACCGCGCCGTTCCTGTGCACCCAGCACGCGTTCCGGATCATGAAGGATCAGACCC
CGCGCGGCGGCCGCATCATCAACAACGGCTCGATCTCGGCGCACGCGCCGCGGCCGTTCTCGGCCGCCTACACCGCCACC
AAGCACGCCATCAGCGGCCTGACCAAGGCCAGCAATCTCGACGGCCGCGCCTACGACATCGCGGTCGGCCAGATCGACAT
CGGCAATGCCGCCACCCCGATGACCGATCGCATGGTGCAAGGCGTGCTGCAGCCCGACGGCCGCACCATCGCTGAGCCGC
GAATGGACGCCAAGGCGGTCGGCGATGCGGTGGCCTACATGGCCGGCCTGCCGCTCGACGCCAACGTGCTGTTCATGACG
GTGATGGCGACCAAGATGCCGTTCGTCGGACGCGGCTGA

Upstream 100 bases:

>100_bases
ATCCGGCGCTCGACGCCAAGCTGAAGAGCTACGACGCCGAAGCGTGCTACATGCAGCGCAGACTGTAACGCGCGAACATC
AAAACACAGGGAGGACCACC

Downstream 100 bases:

>100_bases
CGCCGCGTTCGCAGCACGATTACCAGCTGATCACATAGTTGCTGGTGTAAGGACCGCCGCCGGCCAGCACATTCTTAGTG
CCAGTCAATTCCTGCAGCGC

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 252; Mature: 251

Protein sequence:

>252_residues
MANATTKIALVTGAGTGVGRAAALALMESGFTVVLAGRRLELLQETQKLGAEFGDSLPVVADMADPASIAALFDTIVQRY
GRLDVLFNNAGIGAPPVPFEDLPLEQWQAVVTTNLTAPFLCTQHAFRIMKDQTPRGGRIINNGSISAHAPRPFSAAYTAT
KHAISGLTKASNLDGRAYDIAVGQIDIGNAATPMTDRMVQGVLQPDGRTIAEPRMDAKAVGDAVAYMAGLPLDANVLFMT
VMATKMPFVGRG

Sequences:

>Translated_252_residues
MANATTKIALVTGAGTGVGRAAALALMESGFTVVLAGRRLELLQETQKLGAEFGDSLPVVADMADPASIAALFDTIVQRY
GRLDVLFNNAGIGAPPVPFEDLPLEQWQAVVTTNLTAPFLCTQHAFRIMKDQTPRGGRIINNGSISAHAPRPFSAAYTAT
KHAISGLTKASNLDGRAYDIAVGQIDIGNAATPMTDRMVQGVLQPDGRTIAEPRMDAKAVGDAVAYMAGLPLDANVLFMT
VMATKMPFVGRG
>Mature_251_residues
ANATTKIALVTGAGTGVGRAAALALMESGFTVVLAGRRLELLQETQKLGAEFGDSLPVVADMADPASIAALFDTIVQRYG
RLDVLFNNAGIGAPPVPFEDLPLEQWQAVVTTNLTAPFLCTQHAFRIMKDQTPRGGRIINNGSISAHAPRPFSAAYTATK
HAISGLTKASNLDGRAYDIAVGQIDIGNAATPMTDRMVQGVLQPDGRTIAEPRMDAKAVGDAVAYMAGLPLDANVLFMTV
MATKMPFVGRG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=175, Percent_Identity=32.5714285714286, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI31542939, Length=171, Percent_Identity=33.9181286549708, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=33.7278106508876, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI209862901, Length=134, Percent_Identity=34.3283582089552, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI19923983, Length=134, Percent_Identity=34.3283582089552, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI7706318, Length=168, Percent_Identity=28.5714285714286, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI59889578, Length=192, Percent_Identity=27.0833333333333, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI19923817, Length=175, Percent_Identity=29.7142857142857, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI15277342, Length=233, Percent_Identity=28.755364806867, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI4504505, Length=213, Percent_Identity=30.0469483568075, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI20149619, Length=195, Percent_Identity=28.7179487179487, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI1788459, Length=217, Percent_Identity=35.0230414746544, Blast_Score=116, Evalue=2e-27,
Organism=Escherichia coli, GI87082160, Length=195, Percent_Identity=34.3589743589744, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI2367175, Length=191, Percent_Identity=36.1256544502618, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787335, Length=244, Percent_Identity=31.5573770491803, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787820, Length=252, Percent_Identity=27.7777777777778, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1789208, Length=196, Percent_Identity=30.6122448979592, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI1790717, Length=197, Percent_Identity=30.4568527918782, Blast_Score=75, Evalue=5e-15,
Organism=Escherichia coli, GI87082100, Length=242, Percent_Identity=29.7520661157025, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1786812, Length=171, Percent_Identity=34.5029239766082, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1789057, Length=199, Percent_Identity=28.643216080402, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1789378, Length=159, Percent_Identity=33.3333333333333, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1787526, Length=167, Percent_Identity=29.940119760479, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1786701, Length=200, Percent_Identity=27.5, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787905, Length=121, Percent_Identity=30.5785123966942, Blast_Score=61, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17562908, Length=207, Percent_Identity=30.9178743961353, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=208, Percent_Identity=30.7692307692308, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI71994604, Length=172, Percent_Identity=30.2325581395349, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=201, Percent_Identity=28.3582089552239, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=212, Percent_Identity=28.3018867924528, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=183, Percent_Identity=29.5081967213115, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17559104, Length=195, Percent_Identity=30.2564102564103, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17555612, Length=212, Percent_Identity=26.8867924528302, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17560220, Length=207, Percent_Identity=28.5024154589372, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI71997099, Length=272, Percent_Identity=26.1029411764706, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17531453, Length=202, Percent_Identity=28.7128712871287, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=184, Percent_Identity=29.8913043478261, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17562904, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI17544670, Length=89, Percent_Identity=34.8314606741573, Blast_Score=67, Evalue=7e-12,
Organism=Caenorhabditis elegans, GI17562990, Length=198, Percent_Identity=27.7777777777778, Blast_Score=67, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI17561402, Length=198, Percent_Identity=29.2929292929293, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=223, Percent_Identity=28.2511210762332, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=227, Percent_Identity=27.7533039647577, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17538480, Length=197, Percent_Identity=28.4263959390863, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565030, Length=91, Percent_Identity=37.3626373626374, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=205, Percent_Identity=26.3414634146341, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=175, Percent_Identity=28, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17551412, Length=150, Percent_Identity=28.6666666666667, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=170, Percent_Identity=32.9411764705882, Blast_Score=79, Evalue=6e-16,
Organism=Saccharomyces cerevisiae, GI6322861, Length=219, Percent_Identity=28.7671232876712, Blast_Score=70, Evalue=4e-13,
Organism=Saccharomyces cerevisiae, GI6322067, Length=198, Percent_Identity=28.7878787878788, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580925, Length=232, Percent_Identity=29.3103448275862, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24641232, Length=178, Percent_Identity=34.2696629213483, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI116007236, Length=250, Percent_Identity=27.2, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI24644339, Length=236, Percent_Identity=30.5084745762712, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI116007238, Length=183, Percent_Identity=28.9617486338798, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24648944, Length=231, Percent_Identity=28.1385281385281, Blast_Score=80, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24639444, Length=230, Percent_Identity=30.8695652173913, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI18859837, Length=269, Percent_Identity=30.4832713754647, Blast_Score=78, Evalue=5e-15,
Organism=Drosophila melanogaster, GI23397609, Length=237, Percent_Identity=31.2236286919831, Blast_Score=77, Evalue=9e-15,
Organism=Drosophila melanogaster, GI21357041, Length=193, Percent_Identity=27.979274611399, Blast_Score=74, Evalue=1e-13,
Organism=Drosophila melanogaster, GI116007234, Length=256, Percent_Identity=25.78125, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI28571526, Length=200, Percent_Identity=29.5, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24663911, Length=250, Percent_Identity=25.6, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI281364494, Length=180, Percent_Identity=32.7777777777778, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI116007232, Length=190, Percent_Identity=27.8947368421053, Blast_Score=68, Evalue=7e-12,
Organism=Drosophila melanogaster, GI17737361, Length=197, Percent_Identity=29.9492385786802, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI24584748, Length=209, Percent_Identity=27.7511961722488, Blast_Score=64, Evalue=9e-11,
Organism=Drosophila melanogaster, GI161076933, Length=209, Percent_Identity=27.7511961722488, Blast_Score=64, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26470; Mature: 26339

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MANATTKIALVTGAGTGVGRAAALALMESGFTVVLAGRRLELLQETQKLGAEFGDSLPVV
CCCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEE
ADMADPASIAALFDTIVQRYGRLDVLFNNAGIGAPPVPFEDLPLEQWQAVVTTNLTAPFL
ECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHH
CTQHAFRIMKDQTPRGGRIINNGSISAHAPRPFSAAYTATKHAISGLTKASNLDGRAYDI
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
AVGQIDIGNAATPMTDRMVQGVLQPDGRTIAEPRMDAKAVGDAVAYMAGLPLDANVLFMT
EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
VMATKMPFVGRG
HHHHHCCCCCCC
>Mature Secondary Structure 
ANATTKIALVTGAGTGVGRAAALALMESGFTVVLAGRRLELLQETQKLGAEFGDSLPVV
CCCCEEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEE
ADMADPASIAALFDTIVQRYGRLDVLFNNAGIGAPPVPFEDLPLEQWQAVVTTNLTAPFL
ECCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHH
CTQHAFRIMKDQTPRGGRIINNGSISAHAPRPFSAAYTATKHAISGLTKASNLDGRAYDI
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEE
AVGQIDIGNAATPMTDRMVQGVLQPDGRTIAEPRMDAKAVGDAVAYMAGLPLDANVLFMT
EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHH
VMATKMPFVGRG
HHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]