| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
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The map label for this gene is ydaD [H]
Identifier: 192290747
GI number: 192290747
Start: 2548525
End: 2549385
Strand: Reverse
Name: ydaD [H]
Synonym: Rpal_2362
Alternate gene names: 192290747
Gene position: 2549385-2548525 (Counterclockwise)
Preceding gene: 192290748
Following gene: 192290746
Centisome position: 44.38
GC content: 65.04
Gene sequence:
>861_bases ATGACGCAGACATATCCGGAGCCGCCCTACCCGAGCCAGCGCCAATCCATGCCGGGCTCGACGGACAAGATGACGCCGCG TCCCGATCATGGCGAGCACAGCTACAAGGGCTCCGGCAAGTTGACCGGAAAGGTCGCGATCATCACCGGCGGCGACAGCG GCATCGGACGTGCGGTCGCGATCGCCTACGCCCGTGAAGGCGCCGACCTGCTGATCGCCTATCTGAGCGAGGATGACGAC GCCCGGCAGGTCAAGGAGCTGGTCGAGGCAGAAGGCCGCAAGGCAGTGCTGGTCGCCGGCGATATCTCCCAGCCGCATCA TTGCCGCAAGGTGGTCGACCACGCCGTCGAGGAATTCGGCCGGATCGACATCCTGGTCAACAACGCCGCGCATCAGGCGA CCTTCAAGGATATCGGCGACATCAGCGACGAGGAGTGGCAGACGACGTTCGCCGTCAACATCCACGCGATGTTCTATCTG ACCAAGGCCGCGGTGCCGCACATGAAGCCGGGCAGCGCGATCATCAACACGGCCTCGGTCAATTCCGACATGCCCAACCC GATGCTGCTCGCCTATGCAACGACCAAGGGTGCGATCCAGAACTTCACCGGCGGCTTGGCGCAGATGCTCGCCAGCAAAG GCATCCGCGCCAATGCGGTCGCGCCCGGCCCGATCTGGACGCCGCTCATTCCCTCGACGATGCCGGATGACGCGGTGAAG AACTTCGGCAAGCAGGTTCCGCTGGGCCGCGCCGGCCAGCCCGCGGAGCTTGCCACCGCCTATGTGATGCTGGCCGATCC GCTGTCGAGCTACACGTCCGGCACGACGGTCGCGGTCACCGGCGGCAAACCGTTCATCTGA
Upstream 100 bases:
>100_bases GAAACGGTGATCAGCGCGCTGTTCCAGACCTGACCGATCGGCCCTCCCAAGGAACACCCACGCGCTCCCGCGGTTAGCGC TGCGACATGAGGAGCAGCGG
Downstream 100 bases:
>100_bases GAGGTGGATCGTCTCGGTCGTCCGAGCCTCATCACACCGTGGAGCACGGCGTTAGGAACGAGCATCCCGCATTGCGGTTG GCTCGGCGACACATGGAGAA
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: GSP39 [H]
Number of amino acids: Translated: 286; Mature: 285
Protein sequence:
>286_residues MTQTYPEPPYPSQRQSMPGSTDKMTPRPDHGEHSYKGSGKLTGKVAIITGGDSGIGRAVAIAYAREGADLLIAYLSEDDD ARQVKELVEAEGRKAVLVAGDISQPHHCRKVVDHAVEEFGRIDILVNNAAHQATFKDIGDISDEEWQTTFAVNIHAMFYL TKAAVPHMKPGSAIINTASVNSDMPNPMLLAYATTKGAIQNFTGGLAQMLASKGIRANAVAPGPIWTPLIPSTMPDDAVK NFGKQVPLGRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI
Sequences:
>Translated_286_residues MTQTYPEPPYPSQRQSMPGSTDKMTPRPDHGEHSYKGSGKLTGKVAIITGGDSGIGRAVAIAYAREGADLLIAYLSEDDD ARQVKELVEAEGRKAVLVAGDISQPHHCRKVVDHAVEEFGRIDILVNNAAHQATFKDIGDISDEEWQTTFAVNIHAMFYL TKAAVPHMKPGSAIINTASVNSDMPNPMLLAYATTKGAIQNFTGGLAQMLASKGIRANAVAPGPIWTPLIPSTMPDDAVK NFGKQVPLGRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI >Mature_285_residues TQTYPEPPYPSQRQSMPGSTDKMTPRPDHGEHSYKGSGKLTGKVAIITGGDSGIGRAVAIAYAREGADLLIAYLSEDDDA RQVKELVEAEGRKAVLVAGDISQPHHCRKVVDHAVEEFGRIDILVNNAAHQATFKDIGDISDEEWQTTFAVNIHAMFYLT KAAVPHMKPGSAIINTASVNSDMPNPMLLAYATTKGAIQNFTGGLAQMLASKGIRANAVAPGPIWTPLIPSTMPDDAVKN FGKQVPLGRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=247, Percent_Identity=31.5789473684211, Blast_Score=113, Evalue=2e-25, Organism=Homo sapiens, GI59889578, Length=227, Percent_Identity=31.7180616740088, Blast_Score=110, Evalue=2e-24, Organism=Homo sapiens, GI66933014, Length=255, Percent_Identity=32.156862745098, Blast_Score=105, Evalue=6e-23, Organism=Homo sapiens, GI19923817, Length=271, Percent_Identity=28.7822878228782, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI15277342, Length=253, Percent_Identity=29.6442687747036, Blast_Score=101, Evalue=8e-22, Organism=Homo sapiens, GI10190704, Length=246, Percent_Identity=30.4878048780488, Blast_Score=100, Evalue=1e-21, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=29.7959183673469, Blast_Score=98, Evalue=9e-21, Organism=Homo sapiens, GI40254992, Length=247, Percent_Identity=29.1497975708502, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI31542939, Length=214, Percent_Identity=29.4392523364486, Blast_Score=86, Evalue=4e-17, Organism=Homo sapiens, GI4504505, Length=211, Percent_Identity=30.8056872037915, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI126723191, Length=209, Percent_Identity=29.1866028708134, Blast_Score=85, Evalue=9e-17, Organism=Homo sapiens, GI4758504, Length=232, Percent_Identity=31.0344827586207, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI126723750, Length=250, Percent_Identity=28, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=30.5263157894737, Blast_Score=80, Evalue=2e-15, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=28.6290322580645, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI7706318, Length=217, Percent_Identity=27.6497695852535, Blast_Score=78, Evalue=9e-15, Organism=Homo sapiens, GI210032110, Length=189, Percent_Identity=31.7460317460317, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI142976729, Length=208, Percent_Identity=30.2884615384615, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI40254986, Length=196, Percent_Identity=27.5510204081633, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI310128830, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI310115468, Length=205, Percent_Identity=27.8048780487805, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI224922801, Length=169, Percent_Identity=29.585798816568, Blast_Score=69, Evalue=5e-12, Organism=Homo sapiens, GI40807363, Length=206, Percent_Identity=28.6407766990291, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI83715985, Length=232, Percent_Identity=28.8793103448276, Blast_Score=68, Evalue=1e-11, Organism=Homo sapiens, GI302344755, Length=108, Percent_Identity=35.1851851851852, Blast_Score=66, Evalue=4e-11, Organism=Homo sapiens, GI20149619, Length=211, Percent_Identity=27.4881516587678, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI1789378, Length=284, Percent_Identity=50, Blast_Score=275, Evalue=2e-75, Organism=Escherichia coli, GI87082100, Length=257, Percent_Identity=34.2412451361868, Blast_Score=133, Evalue=1e-32, Organism=Escherichia coli, GI1787335, Length=248, Percent_Identity=34.2741935483871, Blast_Score=124, Evalue=9e-30, Organism=Escherichia coli, GI1788459, Length=243, Percent_Identity=34.156378600823, Blast_Score=120, Evalue=1e-28, Organism=Escherichia coli, GI2367175, Length=252, Percent_Identity=32.9365079365079, Blast_Score=119, Evalue=2e-28, Organism=Escherichia coli, GI1789208, Length=246, Percent_Identity=32.9268292682927, Blast_Score=119, Evalue=3e-28, Organism=Escherichia coli, GI1790717, Length=245, Percent_Identity=31.4285714285714, Blast_Score=118, Evalue=5e-28, Organism=Escherichia coli, GI87082160, Length=245, Percent_Identity=32.6530612244898, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=30.3643724696356, Blast_Score=116, Evalue=2e-27, Organism=Escherichia coli, GI2367365, Length=245, Percent_Identity=32.6530612244898, Blast_Score=103, Evalue=2e-23, Organism=Escherichia coli, GI1786812, Length=256, Percent_Identity=28.515625, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787526, Length=255, Percent_Identity=25.8823529411765, Blast_Score=71, Evalue=6e-14, Organism=Escherichia coli, GI1786701, Length=219, Percent_Identity=27.8538812785388, Blast_Score=67, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17561402, Length=249, Percent_Identity=34.5381526104418, Blast_Score=128, Evalue=3e-30, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=34.6613545816733, Blast_Score=124, Evalue=4e-29, Organism=Caenorhabditis elegans, GI17555706, Length=270, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17560150, Length=270, Percent_Identity=32.5925925925926, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17562904, Length=267, Percent_Identity=31.4606741573034, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=33.9622641509434, Blast_Score=115, Evalue=2e-26, Organism=Caenorhabditis elegans, GI17562906, Length=265, Percent_Identity=30.188679245283, Blast_Score=115, Evalue=3e-26, Organism=Caenorhabditis elegans, GI193204405, Length=267, Percent_Identity=31.4606741573034, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI71994600, Length=252, Percent_Identity=31.7460317460317, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI71994604, Length=257, Percent_Identity=33.0739299610895, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17560676, Length=249, Percent_Identity=29.718875502008, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17531453, Length=269, Percent_Identity=31.9702602230483, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI17559104, Length=272, Percent_Identity=32.7205882352941, Blast_Score=111, Evalue=3e-25, Organism=Caenorhabditis elegans, GI17562910, Length=267, Percent_Identity=31.4606741573034, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17544670, Length=265, Percent_Identity=30.188679245283, Blast_Score=109, Evalue=2e-24, Organism=Caenorhabditis elegans, GI72000259, Length=268, Percent_Identity=30.2238805970149, Blast_Score=105, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17551412, Length=267, Percent_Identity=31.4606741573034, Blast_Score=105, Evalue=4e-23, Organism=Caenorhabditis elegans, GI17562908, Length=274, Percent_Identity=29.9270072992701, Blast_Score=104, Evalue=5e-23, Organism=Caenorhabditis elegans, GI17538480, Length=271, Percent_Identity=30.6273062730627, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17560332, Length=268, Percent_Identity=30.2238805970149, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17563726, Length=262, Percent_Identity=29.3893129770992, Blast_Score=97, Evalue=1e-20, Organism=Caenorhabditis elegans, GI17538486, Length=273, Percent_Identity=28.5714285714286, Blast_Score=93, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560220, Length=269, Percent_Identity=28.2527881040892, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17536025, Length=258, Percent_Identity=29.4573643410853, Blast_Score=91, Evalue=7e-19, Organism=Caenorhabditis elegans, GI17565030, Length=273, Percent_Identity=28.5714285714286, Blast_Score=86, Evalue=3e-17, Organism=Caenorhabditis elegans, GI17564282, Length=193, Percent_Identity=34.1968911917098, Blast_Score=85, Evalue=3e-17, Organism=Caenorhabditis elegans, GI193203117, Length=227, Percent_Identity=29.9559471365639, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI17536651, Length=258, Percent_Identity=27.906976744186, Blast_Score=84, Evalue=8e-17, Organism=Caenorhabditis elegans, GI17538182, Length=255, Percent_Identity=30.5882352941176, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI193203115, Length=224, Percent_Identity=29.9107142857143, Blast_Score=81, Evalue=6e-16, Organism=Caenorhabditis elegans, GI17561272, Length=259, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17568967, Length=214, Percent_Identity=28.9719626168224, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17567345, Length=193, Percent_Identity=30.5699481865285, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71982365, Length=206, Percent_Identity=27.1844660194175, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=27.5303643724696, Blast_Score=74, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=29.8507462686567, Blast_Score=68, Evalue=7e-12, Organism=Saccharomyces cerevisiae, GI6323882, Length=200, Percent_Identity=30, Blast_Score=84, Evalue=2e-17, Organism=Saccharomyces cerevisiae, GI6322861, Length=228, Percent_Identity=29.3859649122807, Blast_Score=76, Evalue=6e-15, Organism=Saccharomyces cerevisiae, GI6322226, Length=211, Percent_Identity=27.4881516587678, Blast_Score=75, Evalue=8e-15, Organism=Saccharomyces cerevisiae, GI6324126, Length=252, Percent_Identity=26.1904761904762, Blast_Score=69, Evalue=6e-13, Organism=Drosophila melanogaster, GI24644339, Length=249, Percent_Identity=32.9317269076305, Blast_Score=122, Evalue=3e-28, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=32.4, Blast_Score=120, Evalue=1e-27, Organism=Drosophila melanogaster, GI21357041, Length=246, Percent_Identity=33.3333333333333, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=33.7349397590361, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI28571526, Length=246, Percent_Identity=32.9268292682927, Blast_Score=114, Evalue=7e-26, Organism=Drosophila melanogaster, GI21355319, Length=250, Percent_Identity=28, Blast_Score=108, Evalue=6e-24, Organism=Drosophila melanogaster, GI24644337, Length=253, Percent_Identity=33.201581027668, Blast_Score=89, Evalue=3e-18, Organism=Drosophila melanogaster, GI24643142, Length=252, Percent_Identity=29.3650793650794, Blast_Score=88, Evalue=7e-18, Organism=Drosophila melanogaster, GI17737361, Length=228, Percent_Identity=28.9473684210526, Blast_Score=85, Evalue=4e-17, Organism=Drosophila melanogaster, GI21357673, Length=195, Percent_Identity=27.6923076923077, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI18859837, Length=195, Percent_Identity=31.2820512820513, Blast_Score=75, Evalue=3e-14, Organism=Drosophila melanogaster, GI21358495, Length=199, Percent_Identity=29.1457286432161, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI24584748, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI161076933, Length=191, Percent_Identity=28.2722513089005, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI24665243, Length=216, Percent_Identity=27.3148148148148, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI24665247, Length=216, Percent_Identity=27.3148148148148, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=27.906976744186, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI221331218, Length=198, Percent_Identity=28.2828282828283, Blast_Score=65, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 30358; Mature: 30227
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQTYPEPPYPSQRQSMPGSTDKMTPRPDHGEHSYKGSGKLTGKVAIITGGDSGIGRAVA CCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEE IAYAREGADLLIAYLSEDDDARQVKELVEAEGRKAVLVAGDISQPHHCRKVVDHAVEEFG EEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC RIDILVNNAAHQATFKDIGDISDEEWQTTFAVNIHAMFYLTKAAVPHMKPGSAIINTASV CEEEEEECCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEHHHCCCCCCCCCCEEEECCC NSDMPNPMLLAYATTKGAIQNFTGGLAQMLASKGIRANAVAPGPIWTPLIPSTMPDDAVK CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH NFGKQVPLGRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI HHHCCCCCCCCCCCHHHHHEEEEEECCHHHHCCCCEEEEECCCCCC >Mature Secondary Structure TQTYPEPPYPSQRQSMPGSTDKMTPRPDHGEHSYKGSGKLTGKVAIITGGDSGIGRAVA CCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCEEE IAYAREGADLLIAYLSEDDDARQVKELVEAEGRKAVLVAGDISQPHHCRKVVDHAVEEFG EEEECCCCEEEEEEECCCCHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC RIDILVNNAAHQATFKDIGDISDEEWQTTFAVNIHAMFYLTKAAVPHMKPGSAIINTASV CEEEEEECCHHHHHHHHHCCCCCCCCEEEEEEEEEEEEEEHHHCCCCCCCCCCEEEECCC NSDMPNPMLLAYATTKGAIQNFTGGLAQMLASKGIRANAVAPGPIWTPLIPSTMPDDAVK CCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH NFGKQVPLGRAGQPAELATAYVMLADPLSSYTSGTTVAVTGGKPFI HHHCCCCCCCCCCCHHHHHEEEEEECCHHHHCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9384377; 9298659 [H]