| Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
|---|---|
| Accession | NC_011004 |
| Length | 5,744,041 |
Click here to switch to the map view.
The map label for this gene is 192290683
Identifier: 192290683
GI number: 192290683
Start: 2485784
End: 2486365
Strand: Reverse
Name: 192290683
Synonym: Rpal_2295
Alternate gene names: NA
Gene position: 2486365-2485784 (Counterclockwise)
Preceding gene: 192290694
Following gene: 192290682
Centisome position: 43.29
GC content: 57.04
Gene sequence:
>582_bases ATGCCAGGGCGCTTGTGTCGTACTGACGGGACGCAGGGACCTTCTTCGCGTCACATTGTCGTACCCATTCCTTGCGATGA ATGCCGTTGCGCCACGTATCGGGATGGGTGTATCCGGTACGACATTCGTTCGGCACGTTCCGGAACCAACGCAGTCATGT CGATCACGACGAAGAAGCAAACATTGACAGGACGGCTGCGCGGCTCGATCGCCATCTTCCTGTTGGTCAGCCAAATTGGC CTGGGCTTTCTTCACCTCGCGAATTCCGATCATCTGAGCGACGTCGCCACATCAAGGTCAATCGTTGCGATGGTGCTTCC TCTGGATTCACTTTCGGTGCATCCATCTGAGGCTGGCGTGCCAACGACAACGCTAAAGTCAATTCTCGCCAATACCCCCC GGCCAGACGGCGACGGTCTCTCGCTCGCTGACCCGCATTGTCACGAATGCTTTTCTGCAAACATTGTTGTTCTCTCTTCC ATGTCGACGCTGGGCCCCCGCCTTGCAGCTCCAGACGTGTCGAGACAACGGCAGATGCCCGACAATTTTGTCGCGCTGGA CACCCCTCCCCCCAAAGCTTGA
Upstream 100 bases:
>100_bases CGCGGCGGCAGCGAATTGTCCGCTCACTCGGGATCGGCGATCCGCAAAAAAAGGGACTGCCAACGCGCGATAATTGCCGT ACAGAGCGAAACGCATCGGC
Downstream 100 bases:
>100_bases TCTCAAGATATAGCACGGCGCCCGGAAACTCCGGAGCGCAGTAGTATCGTGGCCGGCAGTGCCCGATCAGAGCGCTTTGT GCCGTCCGTCTATCAGCTTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 193; Mature: 192
Protein sequence:
>193_residues MPGRLCRTDGTQGPSSRHIVVPIPCDECRCATYRDGCIRYDIRSARSGTNAVMSITTKKQTLTGRLRGSIAIFLLVSQIG LGFLHLANSDHLSDVATSRSIVAMVLPLDSLSVHPSEAGVPTTTLKSILANTPRPDGDGLSLADPHCHECFSANIVVLSS MSTLGPRLAAPDVSRQRQMPDNFVALDTPPPKA
Sequences:
>Translated_193_residues MPGRLCRTDGTQGPSSRHIVVPIPCDECRCATYRDGCIRYDIRSARSGTNAVMSITTKKQTLTGRLRGSIAIFLLVSQIG LGFLHLANSDHLSDVATSRSIVAMVLPLDSLSVHPSEAGVPTTTLKSILANTPRPDGDGLSLADPHCHECFSANIVVLSS MSTLGPRLAAPDVSRQRQMPDNFVALDTPPPKA >Mature_192_residues PGRLCRTDGTQGPSSRHIVVPIPCDECRCATYRDGCIRYDIRSARSGTNAVMSITTKKQTLTGRLRGSIAIFLLVSQIGL GFLHLANSDHLSDVATSRSIVAMVLPLDSLSVHPSEAGVPTTTLKSILANTPRPDGDGLSLADPHCHECFSANIVVLSSM STLGPRLAAPDVSRQRQMPDNFVALDTPPPKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20588; Mature: 20457
Theoretical pI: Translated: 8.30; Mature: 8.30
Prosite motif: PS00430 TONB_DEPENDENT_REC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.6 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 3.6 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGRLCRTDGTQGPSSRHIVVPIPCDECRCATYRDGCIRYDIRSARSGTNAVMSITTKKQ CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHCCCCCCEEEEEEECHH TLTGRLRGSIAIFLLVSQIGLGFLHLANSDHLSDVATSRSIVAMVLPLDSLSVHPSEAGV HHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCC PTTTLKSILANTPRPDGDGLSLADPHCHECFSANIVVLSSMSTLGPRLAAPDVSRQRQMP CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCHHCCCCCCCCCCHHHHCCC DNFVALDTPPPKA CCEEEECCCCCCC >Mature Secondary Structure PGRLCRTDGTQGPSSRHIVVPIPCDECRCATYRDGCIRYDIRSARSGTNAVMSITTKKQ CCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEHHHCCCCCCEEEEEEECHH TLTGRLRGSIAIFLLVSQIGLGFLHLANSDHLSDVATSRSIVAMVLPLDSLSVHPSEAGV HHHHHHHHHHHHHHHHHHHCCEEEEECCCCHHHHHHHCCCEEEEEEECCCCCCCCCCCCC PTTTLKSILANTPRPDGDGLSLADPHCHECFSANIVVLSSMSTLGPRLAAPDVSRQRQMP CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCEEEEECCHHCCCCCCCCCCHHHHCCC DNFVALDTPPPKA CCEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA