Definition Rhodopseudomonas palustris TIE-1 chromosome, complete genome.
Accession NC_011004
Length 5,744,041

Click here to switch to the map view.

The map label for this gene is 192290661

Identifier: 192290661

GI number: 192290661

Start: 2458668

End: 2459120

Strand: Reverse

Name: 192290661

Synonym: Rpal_2270

Alternate gene names: NA

Gene position: 2459120-2458668 (Counterclockwise)

Preceding gene: 192290662

Following gene: 192290660

Centisome position: 42.81

GC content: 56.29

Gene sequence:

>453_bases
ATGACCATCACTGAACTCATCGGCAACCACCTCAGGTCAGCAGCGCAGGCACTCAAAGACCGTAACTTCGACAACTTCTC
GTTCTCGATCCGCTCTCTGGCCCTTTTCAGCGAGGCCGACAAGCTCGCGACGCAGATCGCTCACTCGGTGGCAGAAGCAA
AGCTGTTCTCGGAGTGGCTTCGCCTGAATGGATCCGACTACACCAAGTATCTCGACGAGATCTCCGTTCTGTTCGGTAAG
CAACGCGCGAACGGCAGACTCGCCGATGTGATCCATTACCTGAACGACGAGAAGCGCCGTGCTGCGAAGCTGAAGGAATT
CGAGAGCATGGGATTCGTCTTGATGGAGCCCTCCGTCTTCGAGTTCAGAACTCAGACCGACGACACGACGGATGCAGGCG
CCGCAACCAAGGTTCCTCCTGACTGGAAGATTGATCGTACGCGTTGCTGCTGA

Upstream 100 bases:

>100_bases
AATGATGGCAACGTCGTACTAATCGGTCGCAAAAGTATCGCTTGGCACTCTCAGGAAACCGGGTGACGATTCTCGAGATC
GTCAACACGGGAGAGAAGCC

Downstream 100 bases:

>100_bases
CGCATGCCCTCCGCCTAATCGCTTTCGTCTTCGCCGTCGGCGCCATCGCCGCCGGCACGACGGCGCACTTCGCGGGGGCG
ATCTACGTCAACGTCCGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MTITELIGNHLRSAAQALKDRNFDNFSFSIRSLALFSEADKLATQIAHSVAEAKLFSEWLRLNGSDYTKYLDEISVLFGK
QRANGRLADVIHYLNDEKRRAAKLKEFESMGFVLMEPSVFEFRTQTDDTTDAGAATKVPPDWKIDRTRCC

Sequences:

>Translated_150_residues
MTITELIGNHLRSAAQALKDRNFDNFSFSIRSLALFSEADKLATQIAHSVAEAKLFSEWLRLNGSDYTKYLDEISVLFGK
QRANGRLADVIHYLNDEKRRAAKLKEFESMGFVLMEPSVFEFRTQTDDTTDAGAATKVPPDWKIDRTRCC
>Mature_149_residues
TITELIGNHLRSAAQALKDRNFDNFSFSIRSLALFSEADKLATQIAHSVAEAKLFSEWLRLNGSDYTKYLDEISVLFGKQ
RANGRLADVIHYLNDEKRRAAKLKEFESMGFVLMEPSVFEFRTQTDDTTDAGAATKVPPDWKIDRTRCC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17056; Mature: 16925

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTITELIGNHLRSAAQALKDRNFDNFSFSIRSLALFSEADKLATQIAHSVAEAKLFSEWL
CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLNGSDYTKYLDEISVLFGKQRANGRLADVIHYLNDEKRRAAKLKEFESMGFVLMEPSVF
HCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCHH
EFRTQTDDTTDAGAATKVPPDWKIDRTRCC
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TITELIGNHLRSAAQALKDRNFDNFSFSIRSLALFSEADKLATQIAHSVAEAKLFSEWL
CHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RLNGSDYTKYLDEISVLFGKQRANGRLADVIHYLNDEKRRAAKLKEFESMGFVLMEPSVF
HCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCEEEECCCHH
EFRTQTDDTTDAGAATKVPPDWKIDRTRCC
HHCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA